Wall clock time and date at job start Mon Mar 30 2020 01:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.41337 * 2 1 4 4 O 1.44420 * 110.37176 * 237.69052 * 2 1 3 5 5 C 1.44424 * 105.27398 * 200.65439 * 4 2 1 6 6 C 1.54483 * 104.80421 * 40.50882 * 5 4 2 7 7 C 1.54479 * 110.37516 * 122.30483 * 2 1 3 8 8 H 1.08998 * 110.51636 * 261.59695 * 7 2 1 9 9 C 1.50701 * 110.50999 * 24.16822 * 7 2 1 10 10 O 1.21286 * 119.99800 * 73.71546 * 9 7 2 11 11 N 1.34773 * 120.00012 * 253.71694 * 9 7 2 12 12 C 1.47019 * 125.64932 * 359.69176 * 11 9 7 13 13 C 1.54335 * 107.26853 * 178.84964 * 12 11 9 14 14 C 1.55166 * 103.01974 * 338.14099 * 13 12 11 15 15 O 1.42899 * 111.00178 * 277.23279 * 14 13 12 16 16 C 1.50699 * 111.03477 * 153.39587 * 14 13 12 17 17 H 1.08007 * 119.99300 * 247.77890 * 16 14 13 18 18 C 1.37867 * 120.00345 * 67.78874 * 16 14 13 19 19 N 1.31514 * 120.00045 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 120.00120 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47527 * 59.99607 * 20 18 16 22 22 H 1.48509 * 109.47258 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46893 * 299.99448 * 20 18 16 24 24 C 1.47426 * 125.64692 * 179.97438 * 11 9 7 25 25 H 1.09003 * 109.47376 * 291.75118 * 1 2 3 26 26 H 1.08996 * 109.47463 * 51.75373 * 1 2 3 27 27 H 1.09004 * 109.47005 * 171.75470 * 1 2 3 28 28 H 1.08999 * 110.37474 * 159.34705 * 5 4 2 29 29 H 1.08997 * 110.37329 * 281.68096 * 5 4 2 30 30 H 1.08992 * 110.51053 * 217.37355 * 6 5 4 31 31 H 1.09005 * 110.50904 * 94.66916 * 6 5 4 32 32 H 1.08994 * 109.88284 * 298.39684 * 12 11 9 33 33 H 1.08995 * 109.88236 * 59.56236 * 12 11 9 34 34 H 1.09001 * 110.85104 * 219.67557 * 13 12 11 35 35 H 1.09003 * 110.66795 * 96.51723 * 13 12 11 36 36 H 0.96704 * 114.00017 * 292.19636 * 15 14 13 37 37 H 0.97002 * 120.00317 * 180.02562 * 19 18 16 38 38 H 1.08997 * 110.37310 * 322.92990 * 24 11 9 39 39 H 1.09004 * 110.36822 * 85.14402 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 8 2.0328 -0.7236 -1.1443 5 6 3.3873 -1.0870 -0.7995 6 6 3.3178 -1.5055 0.6860 7 6 2.0679 -0.7739 1.2240 8 1 2.3407 -0.0840 2.0225 9 6 1.0445 -1.7665 1.7125 10 8 0.8354 -2.7816 1.0825 11 7 0.3617 -1.5262 2.8493 12 6 0.5194 -0.3448 3.7101 13 6 -0.4844 -0.4884 4.8736 14 6 -1.5422 -1.4700 4.3035 15 8 -2.5000 -0.7798 3.4983 16 6 -2.2218 -2.2351 5.4097 17 1 -2.0585 -3.2980 5.5105 18 6 -3.0522 -1.5785 6.2929 19 7 -3.2509 -0.2842 6.1703 20 14 -3.8952 -2.5271 7.6636 21 1 -2.8694 -3.1547 8.5348 22 1 -4.7271 -1.5978 8.4698 23 1 -4.7590 -3.5826 7.0764 24 6 -0.6629 -2.4072 3.4387 25 1 -0.3634 0.3808 0.9545 26 1 -0.3634 0.6361 -0.8070 27 1 -0.3633 -1.0171 -0.1474 28 1 3.7242 -1.9221 -1.4137 29 1 4.0524 -0.2323 -0.9221 30 1 4.2109 -1.1771 1.2174 31 1 3.1957 -2.5852 0.7733 32 1 1.5368 -0.3026 4.0988 33 1 0.2993 0.5594 3.1427 34 1 -0.9397 0.4723 5.1140 35 1 0.0024 -0.9134 5.7515 36 1 -3.0736 -0.1810 3.9959 37 1 -3.8348 0.1779 6.7919 38 1 -1.2608 -2.8714 2.6545 39 1 -0.1949 -3.1707 4.0601 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592848071.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:06 Heat of formation + Delta-G solvation = -132.133997 kcal Electronic energy + Delta-G solvation = -21991.704818 eV Core-core repulsion = 18706.126805 eV Total energy + Delta-G solvation = -3285.578013 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.41747 -38.55504 -36.98287 -34.33416 -32.38170 -32.16905 -31.46682 -29.76115 -28.37883 -26.43261 -25.03969 -22.77706 -22.06707 -21.34764 -19.66450 -18.40423 -17.44427 -16.99096 -16.20980 -15.57193 -15.44291 -15.03674 -14.97860 -14.44821 -14.16844 -13.79411 -13.11865 -12.83979 -12.40905 -12.20939 -12.14917 -12.03370 -11.78013 -11.71057 -11.39728 -11.35760 -11.15305 -10.99274 -10.89863 -10.83175 -10.65054 -10.52900 -10.07711 -9.79310 -9.46676 -9.24041 -8.71008 -8.25240 -7.99864 -6.33479 -4.41264 2.99732 3.19125 3.24273 3.27272 3.50418 3.90514 4.23324 4.52942 4.70069 4.84364 4.95002 5.03641 5.12803 5.34457 5.39740 5.47992 5.50909 5.58704 5.69290 5.74834 5.81886 5.91906 5.97893 6.04329 6.07260 6.25127 6.40670 6.46075 6.63525 6.83833 6.87190 6.95094 7.25875 7.28530 7.69911 7.95632 8.12431 8.59764 8.66332 9.27922 9.44314 10.74205 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.042909 B = 0.004801 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.384975 B = 5830.278847 C = 5964.017243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.092 3.908 3 H 0.076 0.924 4 O -0.365 6.365 5 C 0.049 3.951 6 C -0.140 4.140 7 C -0.141 4.141 8 H 0.099 0.901 9 C 0.537 3.463 10 O -0.547 6.547 11 N -0.606 5.606 12 C 0.099 3.901 13 C -0.139 4.139 14 C 0.250 3.750 15 O -0.584 6.584 16 C -0.536 4.536 17 H 0.065 0.935 18 C 0.073 3.927 19 N -0.898 5.898 20 Si 0.904 3.096 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.119 3.881 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.385 0.615 37 H 0.270 0.730 38 H 0.070 0.930 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.026 3.882 -5.865 13.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.034 3.966 3 H 0.094 0.906 4 O -0.284 6.284 5 C -0.028 4.028 6 C -0.178 4.178 7 C -0.163 4.163 8 H 0.117 0.883 9 C 0.325 3.675 10 O -0.425 6.425 11 N -0.338 5.338 12 C -0.024 4.024 13 C -0.178 4.178 14 C 0.210 3.790 15 O -0.394 6.394 16 C -0.575 4.575 17 H 0.083 0.917 18 C -0.129 4.129 19 N -0.538 5.538 20 Si 0.731 3.269 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.002 4.002 25 H 0.096 0.904 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.110 0.890 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.237 0.763 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.018 3.095 -6.849 13.337 hybrid contribution -0.518 0.082 1.640 1.722 sum 10.499 3.177 -5.209 12.144 Atomic orbital electron populations 1.21954 0.92377 1.04149 1.02946 1.22823 0.96073 0.94332 0.83337 0.90626 1.89176 1.26859 1.74548 1.37769 1.23342 0.84869 0.99587 0.94992 1.22917 0.96180 1.02576 0.96161 1.22792 0.95733 0.97919 0.99869 0.88293 1.19691 0.81621 0.86723 0.79482 1.90668 1.67270 1.28539 1.56016 1.48635 1.39293 1.23076 1.22833 1.22169 0.99368 0.87818 0.93051 1.23210 0.96541 1.02959 0.95108 1.19552 0.85243 0.87566 0.86674 1.86100 1.50947 1.62639 1.39709 1.21453 1.28399 0.95600 1.12025 0.91708 1.24977 0.95556 0.94932 0.97447 1.69548 1.37905 1.07910 1.38450 0.86456 0.79490 0.79685 0.81245 1.20045 1.21081 1.19952 1.22374 0.88233 0.93005 0.96629 0.90372 0.91820 0.90768 0.89047 0.92427 0.90202 0.89376 0.92935 0.92406 0.89845 0.91388 0.76259 0.91996 0.91117 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 8.55 37.16 0.32 -2.15 16 2 C 0.09 1.31 3.83 -25.95 -0.10 1.21 16 3 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 4 O -0.36 -5.61 11.34 -35.23 -0.40 -6.01 16 5 C 0.05 0.57 7.63 37.94 0.29 0.86 16 6 C -0.14 -1.73 6.59 -25.16 -0.17 -1.89 16 7 C -0.14 -2.02 3.18 -90.21 -0.29 -2.31 16 8 H 0.10 1.20 6.85 -51.93 -0.36 0.85 16 9 C 0.54 10.08 4.82 -10.99 -0.05 10.03 16 10 O -0.55 -12.15 15.91 5.55 0.09 -12.06 16 11 N -0.61 -11.74 3.33 -170.53 -0.57 -12.31 16 12 C 0.10 1.71 5.94 -3.06 -0.02 1.69 16 13 C -0.14 -2.88 5.64 -24.89 -0.14 -3.02 16 14 C 0.25 5.91 0.89 -89.63 -0.08 5.83 16 15 O -0.58 -14.64 13.18 -35.23 -0.46 -15.10 16 16 C -0.54 -13.71 8.25 -34.44 -0.28 -13.99 16 17 H 0.06 1.65 7.77 -52.48 -0.41 1.24 16 18 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 19 N -0.90 -22.65 10.79 55.43 0.60 -22.05 16 20 Si 0.90 19.85 29.54 -169.99 -5.02 14.83 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 C 0.12 2.64 6.08 -2.54 -0.02 2.62 16 25 H 0.08 1.26 7.62 -51.93 -0.40 0.87 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.07 1.40 6.96 -51.93 -0.36 1.04 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 1.26 7.20 -51.93 -0.37 0.88 16 32 H 0.05 0.77 7.93 -51.93 -0.41 0.36 16 33 H 0.06 0.93 7.74 -51.93 -0.40 0.53 16 34 H 0.08 1.80 7.85 -51.93 -0.41 1.39 16 35 H 0.07 1.41 8.03 -51.93 -0.42 0.99 16 36 H 0.39 9.77 6.93 45.56 0.32 10.08 16 37 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 38 H 0.07 1.69 8.04 -51.93 -0.42 1.27 16 39 H 0.07 1.50 8.02 -51.93 -0.42 1.08 16 LS Contribution 312.05 15.07 4.70 4.70 Total: -1.00 -28.81 312.05 -6.99 -35.81 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -5.30 Total: 11.58 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -0.63 Total: 0.61 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.03 Total: -34.36 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.78 Total: -33.17 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.81 -6.99 -35.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848071.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.329 kcal (2) G-P(sol) polarization free energy of solvation -28.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds