Wall clock time and date at job start Mon Mar 30 2020 01:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.41337 * 2 1 4 4 O 1.44420 * 110.37176 * 237.69052 * 2 1 3 5 5 C 1.44424 * 105.27398 * 200.65439 * 4 2 1 6 6 C 1.54483 * 104.80421 * 40.50882 * 5 4 2 7 7 C 1.54479 * 110.37516 * 122.30483 * 2 1 3 8 8 H 1.08998 * 110.51636 * 261.59695 * 7 2 1 9 9 C 1.50701 * 110.50999 * 24.16822 * 7 2 1 10 10 O 1.21286 * 119.99800 * 73.71546 * 9 7 2 11 11 N 1.34773 * 120.00012 * 253.71694 * 9 7 2 12 12 C 1.47019 * 125.64932 * 359.69176 * 11 9 7 13 13 C 1.54335 * 107.26853 * 178.84964 * 12 11 9 14 14 C 1.55166 * 103.01974 * 338.14099 * 13 12 11 15 15 O 1.42899 * 111.00178 * 277.23279 * 14 13 12 16 16 C 1.50699 * 111.03477 * 153.39587 * 14 13 12 17 17 H 1.08007 * 119.99300 * 247.77890 * 16 14 13 18 18 C 1.37867 * 120.00345 * 67.78874 * 16 14 13 19 19 N 1.31514 * 120.00045 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 120.00120 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47527 * 59.99607 * 20 18 16 22 22 H 1.48509 * 109.47258 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46893 * 299.99448 * 20 18 16 24 24 C 1.47426 * 125.64692 * 179.97438 * 11 9 7 25 25 H 1.09003 * 109.47376 * 291.75118 * 1 2 3 26 26 H 1.08996 * 109.47463 * 51.75373 * 1 2 3 27 27 H 1.09004 * 109.47005 * 171.75470 * 1 2 3 28 28 H 1.08999 * 110.37474 * 159.34705 * 5 4 2 29 29 H 1.08997 * 110.37329 * 281.68096 * 5 4 2 30 30 H 1.08992 * 110.51053 * 217.37355 * 6 5 4 31 31 H 1.09005 * 110.50904 * 94.66916 * 6 5 4 32 32 H 1.08994 * 109.88284 * 298.39684 * 12 11 9 33 33 H 1.08995 * 109.88236 * 59.56236 * 12 11 9 34 34 H 1.09001 * 110.85104 * 219.67557 * 13 12 11 35 35 H 1.09003 * 110.66795 * 96.51723 * 13 12 11 36 36 H 0.96704 * 114.00017 * 292.19636 * 15 14 13 37 37 H 0.97002 * 120.00317 * 180.02562 * 19 18 16 38 38 H 1.08997 * 110.37310 * 322.92990 * 24 11 9 39 39 H 1.09004 * 110.36822 * 85.14402 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 8 2.0328 -0.7236 -1.1443 5 6 3.3873 -1.0870 -0.7995 6 6 3.3178 -1.5055 0.6860 7 6 2.0679 -0.7739 1.2240 8 1 2.3407 -0.0840 2.0225 9 6 1.0445 -1.7665 1.7125 10 8 0.8354 -2.7816 1.0825 11 7 0.3617 -1.5262 2.8493 12 6 0.5194 -0.3448 3.7101 13 6 -0.4844 -0.4884 4.8736 14 6 -1.5422 -1.4700 4.3035 15 8 -2.5000 -0.7798 3.4983 16 6 -2.2218 -2.2351 5.4097 17 1 -2.0585 -3.2980 5.5105 18 6 -3.0522 -1.5785 6.2929 19 7 -3.2509 -0.2842 6.1703 20 14 -3.8952 -2.5271 7.6636 21 1 -2.8694 -3.1547 8.5348 22 1 -4.7271 -1.5978 8.4698 23 1 -4.7590 -3.5826 7.0764 24 6 -0.6629 -2.4072 3.4387 25 1 -0.3634 0.3808 0.9545 26 1 -0.3634 0.6361 -0.8070 27 1 -0.3633 -1.0171 -0.1474 28 1 3.7242 -1.9221 -1.4137 29 1 4.0524 -0.2323 -0.9221 30 1 4.2109 -1.1771 1.2174 31 1 3.1957 -2.5852 0.7733 32 1 1.5368 -0.3026 4.0988 33 1 0.2993 0.5594 3.1427 34 1 -0.9397 0.4723 5.1140 35 1 0.0024 -0.9134 5.7515 36 1 -3.0736 -0.1810 3.9959 37 1 -3.8348 0.1779 6.7919 38 1 -1.2608 -2.8714 2.6545 39 1 -0.1949 -3.1707 4.0601 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592848071.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:06 Heat of formation + Delta-G solvation = -153.452751 kcal Electronic energy + Delta-G solvation = -21992.629268 eV Core-core repulsion = 18706.126805 eV Total energy + Delta-G solvation = -3286.502463 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.72057 -39.96267 -38.57874 -36.10539 -34.13838 -33.58192 -32.50813 -31.41713 -30.04592 -27.77686 -26.66473 -24.28797 -23.05573 -22.67199 -21.44119 -19.83990 -19.17157 -18.45660 -17.46366 -16.94669 -16.83623 -16.52534 -16.36839 -16.09782 -15.55438 -15.37037 -14.77223 -14.22324 -13.91505 -13.70851 -13.54968 -13.37701 -13.26389 -13.21927 -13.03110 -12.87420 -12.60883 -12.48409 -12.29444 -12.26949 -11.97293 -11.93168 -11.85439 -11.30331 -10.89730 -10.67958 -10.58513 -10.14737 -9.56884 -8.25733 -6.40187 1.43103 1.45391 1.51979 1.57552 2.03386 2.39807 2.90615 2.99315 3.38340 3.57744 3.73394 3.86142 4.01292 4.09686 4.19895 4.28317 4.33930 4.35470 4.38031 4.48533 4.58259 4.60914 4.70249 4.84271 4.86656 4.90777 4.93651 5.09167 5.15410 5.19681 5.30582 5.44353 5.53367 5.77027 5.89680 6.05629 6.60786 6.65645 7.17363 7.31363 7.46118 8.80379 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.042909 B = 0.004801 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.384975 B = 5830.278847 C = 5964.017243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.093 3.907 3 H 0.118 0.882 4 O -0.397 6.397 5 C 0.045 3.955 6 C -0.137 4.137 7 C -0.138 4.138 8 H 0.132 0.868 9 C 0.531 3.469 10 O -0.591 6.591 11 N -0.609 5.609 12 C 0.104 3.896 13 C -0.130 4.130 14 C 0.237 3.763 15 O -0.595 6.595 16 C -0.565 4.565 17 H 0.054 0.946 18 C 0.039 3.961 19 N -0.909 5.909 20 Si 0.959 3.041 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.280 1.280 24 C 0.124 3.876 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.030 0.970 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.119 0.881 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.381 0.619 37 H 0.273 0.727 38 H 0.039 0.961 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.186 5.637 -5.472 15.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.035 3.965 3 H 0.135 0.865 4 O -0.317 6.317 5 C -0.031 4.031 6 C -0.175 4.175 7 C -0.159 4.159 8 H 0.150 0.850 9 C 0.322 3.678 10 O -0.473 6.473 11 N -0.341 5.341 12 C -0.017 4.017 13 C -0.169 4.169 14 C 0.196 3.804 15 O -0.405 6.405 16 C -0.603 4.603 17 H 0.073 0.927 18 C -0.163 4.163 19 N -0.548 5.548 20 Si 0.785 3.215 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.206 1.206 24 C 0.001 3.999 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.049 0.951 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.137 0.863 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.233 0.767 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.201 4.871 -6.453 15.480 hybrid contribution -1.237 -0.508 1.479 1.994 sum 11.964 4.363 -4.973 13.671 Atomic orbital electron populations 1.21893 0.94456 1.01629 1.03147 1.22986 0.94526 0.96119 0.82852 0.86499 1.89146 1.28986 1.75098 1.38431 1.23602 0.83763 1.01274 0.94460 1.22970 0.96670 1.00759 0.97135 1.22925 0.94789 0.97294 1.00915 0.85011 1.20632 0.81761 0.86991 0.78430 1.90643 1.68716 1.30817 1.57075 1.48712 1.38649 1.23176 1.23519 1.22249 1.00459 0.87411 0.91624 1.22992 0.96334 1.01286 0.96260 1.19727 0.85657 0.88464 0.86512 1.86091 1.51477 1.62694 1.40215 1.21693 1.29785 0.95509 1.13288 0.92749 1.25573 0.95840 0.95762 0.99088 1.69605 1.37862 1.08530 1.38825 0.85593 0.78520 0.78458 0.78926 1.19508 1.20318 1.20565 1.22113 0.88826 0.93354 0.95602 0.91023 0.90254 0.95069 0.88679 0.88816 0.86263 0.92160 0.88896 0.90602 0.90832 0.91671 0.76744 0.91742 0.94209 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.74 8.55 71.98 0.62 -4.13 16 2 C 0.09 2.36 3.83 31.10 0.12 2.48 16 3 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 4 O -0.40 -11.42 11.34 -148.98 -1.69 -13.11 16 5 C 0.05 0.91 7.63 72.49 0.55 1.46 16 6 C -0.14 -2.95 6.59 31.61 0.21 -2.74 16 7 C -0.14 -3.53 3.18 -10.53 -0.03 -3.56 16 8 H 0.13 2.50 6.85 -2.39 -0.02 2.48 16 9 C 0.53 19.70 4.82 87.66 0.42 20.12 16 10 O -0.59 -27.15 15.91 -3.05 -0.05 -27.19 16 11 N -0.61 -23.26 3.33 -811.82 -2.70 -25.96 16 12 C 0.10 3.35 5.94 86.73 0.52 3.86 16 13 C -0.13 -5.27 5.64 31.79 0.18 -5.09 16 14 C 0.24 11.37 0.89 -10.15 -0.01 11.36 16 15 O -0.59 -30.59 13.18 -148.98 -1.96 -32.55 16 16 C -0.56 -29.43 8.25 25.60 0.21 -29.21 16 17 H 0.05 2.86 7.77 -2.91 -0.02 2.84 16 18 C 0.04 1.94 5.30 84.65 0.45 2.39 16 19 N -0.91 -45.74 10.79 21.44 0.23 -45.51 16 20 Si 0.96 40.67 29.54 68.60 2.03 42.69 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 22 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 24 C 0.12 5.67 6.08 86.85 0.53 6.20 16 25 H 0.07 2.25 7.62 -2.39 -0.02 2.23 16 26 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.03 1.20 6.96 -2.38 -0.02 1.19 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 1.65 7.20 -2.38 -0.02 1.63 16 32 H 0.09 2.30 7.93 -2.39 -0.02 2.28 16 33 H 0.08 2.20 7.74 -2.39 -0.02 2.18 16 34 H 0.07 3.11 7.85 -2.39 -0.02 3.09 16 35 H 0.06 2.64 8.03 -2.39 -0.02 2.62 16 36 H 0.38 19.77 6.93 -74.05 -0.51 19.26 16 37 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 38 H 0.04 2.01 8.04 -2.39 -0.02 1.99 16 39 H 0.07 3.11 8.02 -2.38 -0.02 3.09 16 Total: -1.00 -65.18 312.05 0.15 -65.03 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: 0.54 Total: 33.47 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 3.76 Total: 3.13 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: -2.47 Total: -71.47 kcal Atomic # 8 Polarization: -69.16 SS G_CDS: -3.70 Total: -72.86 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.69 kcal Total: -65.18 0.15 -65.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848071.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.421 kcal (2) G-P(sol) polarization free energy of solvation -65.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds