Wall clock time and date at job start Mon Mar 30 2020 01:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 110.41817 * 2 1 4 4 O 1.44422 * 110.37478 * 237.69226 * 2 1 3 5 5 C 1.44425 * 105.27891 * 200.65496 * 4 2 1 6 6 C 1.54476 * 104.80027 * 40.50987 * 5 4 2 7 7 C 1.54479 * 110.37537 * 122.30708 * 2 1 3 8 8 H 1.09003 * 110.51240 * 261.59267 * 7 2 1 9 9 C 1.50694 * 110.50699 * 24.16843 * 7 2 1 10 10 O 1.21286 * 120.00578 * 73.64036 * 9 7 2 11 11 N 1.34783 * 119.99960 * 253.63463 * 9 7 2 12 12 C 1.47021 * 125.64756 * 0.03188 * 11 9 7 13 13 C 1.54318 * 107.40300 * 181.10124 * 12 11 9 14 14 C 1.55159 * 102.94224 * 22.11283 * 13 12 11 15 15 O 1.42902 * 111.00421 * 82.57599 * 14 13 12 16 16 C 1.50701 * 111.00437 * 206.38701 * 14 13 12 17 17 H 1.08004 * 119.99809 * 118.54384 * 16 14 13 18 18 C 1.37877 * 119.99981 * 298.55134 * 16 14 13 19 19 N 1.31511 * 120.00013 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99952 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47530 * 89.99417 * 20 18 16 22 22 H 1.48500 * 109.47199 * 209.99745 * 20 18 16 23 23 H 1.48502 * 109.46898 * 329.99478 * 20 18 16 24 24 C 1.47744 * 125.82235 * 179.97438 * 11 9 7 25 25 H 1.09007 * 109.47340 * 291.73822 * 1 2 3 26 26 H 1.09001 * 109.47692 * 51.74047 * 1 2 3 27 27 H 1.09005 * 109.47205 * 171.74161 * 1 2 3 28 28 H 1.08998 * 110.36980 * 159.34241 * 5 4 2 29 29 H 1.09006 * 110.36848 * 281.56662 * 5 4 2 30 30 H 1.08998 * 110.50771 * 217.37934 * 6 5 4 31 31 H 1.09001 * 110.51250 * 94.67092 * 6 5 4 32 32 H 1.08996 * 109.88167 * 61.60233 * 12 11 9 33 33 H 1.09004 * 109.88066 * 300.59300 * 12 11 9 34 34 H 1.08997 * 110.72234 * 140.47718 * 13 12 11 35 35 H 1.09001 * 110.71861 * 263.57412 * 13 12 11 36 36 H 0.96700 * 113.99958 * 61.45542 * 15 14 13 37 37 H 0.97007 * 119.99961 * 180.02562 * 19 18 16 38 38 H 1.09003 * 110.28922 * 37.03182 * 24 11 9 39 39 H 1.08998 * 110.53025 * 274.75729 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 8 2.0328 -0.7236 -1.1443 5 6 3.3873 -1.0871 -0.7995 6 6 3.3178 -1.5056 0.6858 7 6 2.0678 -0.7740 1.2240 8 1 2.3407 -0.0840 2.0224 9 6 1.0444 -1.7665 1.7123 10 8 0.8342 -2.7810 1.0817 11 7 0.3627 -1.5270 2.8501 12 6 0.5169 -0.3432 3.7083 13 6 -0.4417 -0.5131 4.9056 14 6 -0.6733 -2.0467 4.9505 15 8 0.3909 -2.7054 5.6402 16 6 -2.0039 -2.3740 5.5777 17 1 -2.7571 -2.8950 5.0053 18 6 -2.2597 -2.0082 6.8822 19 7 -1.3423 -1.3741 7.5793 20 14 -3.9088 -2.4145 7.6599 21 1 -3.8346 -3.7477 8.3098 22 1 -4.2432 -1.3858 8.6773 23 1 -4.9596 -2.4330 6.6108 24 6 -0.6646 -2.4070 3.4442 25 1 -0.3634 0.3806 0.9546 26 1 -0.3634 0.6363 -0.8069 27 1 -0.3634 -1.0170 -0.1476 28 1 3.7241 -1.9221 -1.4138 29 1 4.0528 -0.2327 -0.9241 30 1 4.2109 -1.1771 1.2173 31 1 3.1956 -2.5852 0.7731 32 1 0.2567 0.5559 3.1498 33 1 1.5451 -0.2742 4.0635 34 1 0.0266 -0.1667 5.8268 35 1 -1.3781 0.0159 4.7281 36 1 0.4864 -2.4367 6.5642 37 1 -1.5222 -1.1170 8.4972 38 1 -0.3918 -3.4533 3.3060 39 1 -1.6405 -2.2085 3.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592848073.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:08 Heat of formation + Delta-G solvation = -132.004700 kcal Electronic energy + Delta-G solvation = -21913.109061 eV Core-core repulsion = 18627.536655 eV Total energy + Delta-G solvation = -3285.572406 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.42954 -38.56268 -36.99646 -34.31213 -32.40260 -32.25714 -31.51905 -29.72264 -28.38409 -26.47053 -25.05260 -22.77803 -22.09031 -21.36740 -19.70660 -18.41355 -17.37254 -17.07258 -16.11579 -15.59202 -15.48180 -15.08668 -14.97215 -14.61006 -14.20728 -13.57719 -13.25484 -12.85288 -12.44863 -12.39318 -12.18586 -11.93435 -11.86300 -11.75475 -11.36717 -11.34009 -11.20301 -11.00935 -10.92759 -10.87987 -10.64731 -10.49483 -10.06340 -9.82170 -9.45056 -9.23956 -8.71130 -8.26207 -8.00676 -6.31907 -4.39900 2.99340 3.18287 3.25748 3.28760 3.49226 3.86865 4.24288 4.51117 4.68558 4.82458 4.96073 5.01734 5.11336 5.31864 5.36415 5.42471 5.51277 5.54206 5.68674 5.73547 5.76636 5.87059 5.91697 6.00126 6.06984 6.23096 6.30264 6.40565 6.62837 6.82310 6.85430 6.94024 7.25456 7.30407 7.69921 7.98623 8.12326 8.61748 8.66183 9.27119 9.35986 10.75537 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.041042 B = 0.004725 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.064553 B = 5924.090976 C = 6024.963507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.092 3.908 3 H 0.076 0.924 4 O -0.365 6.365 5 C 0.050 3.950 6 C -0.140 4.140 7 C -0.141 4.141 8 H 0.100 0.900 9 C 0.537 3.463 10 O -0.547 6.547 11 N -0.607 5.607 12 C 0.097 3.903 13 C -0.135 4.135 14 C 0.248 3.752 15 O -0.583 6.583 16 C -0.535 4.535 17 H 0.065 0.935 18 C 0.074 3.926 19 N -0.896 5.896 20 Si 0.902 3.098 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.120 3.880 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.380 0.620 37 H 0.268 0.732 38 H 0.069 0.931 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.178 6.409 -8.924 13.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.034 3.966 3 H 0.094 0.906 4 O -0.284 6.284 5 C -0.027 4.027 6 C -0.178 4.178 7 C -0.163 4.163 8 H 0.118 0.882 9 C 0.325 3.675 10 O -0.425 6.425 11 N -0.339 5.339 12 C -0.026 4.026 13 C -0.174 4.174 14 C 0.207 3.793 15 O -0.391 6.391 16 C -0.574 4.574 17 H 0.083 0.917 18 C -0.129 4.129 19 N -0.535 5.535 20 Si 0.730 3.270 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.001 4.001 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.110 0.890 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.230 0.770 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.092 5.605 -9.932 13.430 hybrid contribution -0.755 0.322 1.436 1.654 sum 6.337 5.927 -8.496 12.144 Atomic orbital electron populations 1.21956 0.92878 1.04088 1.02567 1.22804 0.95792 0.94463 0.83545 0.90589 1.89164 1.27021 1.74530 1.37681 1.23352 0.84690 0.99624 0.95076 1.22912 0.96235 1.02687 0.95986 1.22789 0.95821 0.97957 0.99740 0.88222 1.19681 0.81413 0.86693 0.79690 1.90668 1.67226 1.28375 1.56250 1.48721 1.39506 1.23051 1.22630 1.22201 1.00542 0.86976 0.92859 1.23172 0.97635 1.01196 0.95409 1.19607 0.86434 0.86864 0.86350 1.86150 1.54819 1.69214 1.28927 1.21446 0.99429 1.38422 0.98079 0.91721 1.24976 0.97455 0.93616 0.96858 1.69714 1.34087 1.39335 1.10342 0.86423 0.83333 0.78257 0.79016 1.20391 1.21056 1.19687 1.22412 0.89600 0.94360 0.93728 0.90835 0.91712 0.90711 0.89010 0.92386 0.90113 0.89296 0.92941 0.92503 0.89519 0.91311 0.77022 0.92229 0.91225 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 8.55 37.15 0.32 -1.88 16 2 C 0.09 1.23 3.83 -25.96 -0.10 1.13 16 3 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 4 O -0.37 -5.43 11.34 -35.23 -0.40 -5.83 16 5 C 0.05 0.57 7.63 37.93 0.29 0.86 16 6 C -0.14 -1.78 6.59 -25.16 -0.17 -1.95 16 7 C -0.14 -2.02 3.18 -90.21 -0.29 -2.31 16 8 H 0.10 1.24 6.79 -51.93 -0.35 0.88 16 9 C 0.54 10.08 4.82 -10.99 -0.05 10.02 16 10 O -0.55 -12.14 15.92 5.55 0.09 -12.05 16 11 N -0.61 -11.74 3.34 -170.29 -0.57 -12.31 16 12 C 0.10 1.68 5.98 -3.07 -0.02 1.66 16 13 C -0.14 -2.81 5.38 -24.90 -0.13 -2.94 16 14 C 0.25 5.85 0.87 -89.64 -0.08 5.77 16 15 O -0.58 -14.57 13.16 -35.23 -0.46 -15.04 16 16 C -0.54 -13.72 8.27 -34.44 -0.28 -14.00 16 17 H 0.06 1.66 7.79 -52.48 -0.41 1.25 16 18 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 19 N -0.90 -22.54 10.76 55.43 0.60 -21.95 16 20 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 24 C 0.12 2.67 6.10 -2.37 -0.01 2.65 16 25 H 0.07 0.99 7.60 -51.92 -0.39 0.60 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 1.26 6.96 -51.93 -0.36 0.90 16 28 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.33 7.21 -51.93 -0.37 0.95 16 32 H 0.05 0.77 7.72 -51.93 -0.40 0.37 16 33 H 0.06 0.93 7.83 -51.93 -0.41 0.52 16 34 H 0.09 1.88 7.54 -51.93 -0.39 1.49 16 35 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 36 H 0.38 9.44 7.56 45.56 0.34 9.78 16 37 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 38 H 0.07 1.66 8.05 -51.93 -0.42 1.24 16 39 H 0.07 1.54 8.03 -51.93 -0.42 1.12 16 LS Contribution 312.00 15.07 4.70 4.70 Total: -1.00 -29.01 312.00 -6.93 -35.94 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -5.25 Total: 10.86 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -0.62 Total: 0.79 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.03 Total: -34.26 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.77 Total: -32.92 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.01 -6.93 -35.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848073.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.060 kcal (2) G-P(sol) polarization free energy of solvation -29.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds