Wall clock time and date at job start Mon Mar 30 2020 01:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 110.41817 * 2 1 4 4 O 1.44422 * 110.37478 * 237.69226 * 2 1 3 5 5 C 1.44425 * 105.27891 * 200.65496 * 4 2 1 6 6 C 1.54476 * 104.80027 * 40.50987 * 5 4 2 7 7 C 1.54479 * 110.37537 * 122.30708 * 2 1 3 8 8 H 1.09003 * 110.51240 * 261.59267 * 7 2 1 9 9 C 1.50694 * 110.50699 * 24.16843 * 7 2 1 10 10 O 1.21286 * 120.00578 * 73.64036 * 9 7 2 11 11 N 1.34783 * 119.99960 * 253.63463 * 9 7 2 12 12 C 1.47021 * 125.64756 * 0.03188 * 11 9 7 13 13 C 1.54318 * 107.40300 * 181.10124 * 12 11 9 14 14 C 1.55159 * 102.94224 * 22.11283 * 13 12 11 15 15 O 1.42902 * 111.00421 * 82.57599 * 14 13 12 16 16 C 1.50701 * 111.00437 * 206.38701 * 14 13 12 17 17 H 1.08004 * 119.99809 * 118.54384 * 16 14 13 18 18 C 1.37877 * 119.99981 * 298.55134 * 16 14 13 19 19 N 1.31511 * 120.00013 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99952 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47530 * 89.99417 * 20 18 16 22 22 H 1.48500 * 109.47199 * 209.99745 * 20 18 16 23 23 H 1.48502 * 109.46898 * 329.99478 * 20 18 16 24 24 C 1.47744 * 125.82235 * 179.97438 * 11 9 7 25 25 H 1.09007 * 109.47340 * 291.73822 * 1 2 3 26 26 H 1.09001 * 109.47692 * 51.74047 * 1 2 3 27 27 H 1.09005 * 109.47205 * 171.74161 * 1 2 3 28 28 H 1.08998 * 110.36980 * 159.34241 * 5 4 2 29 29 H 1.09006 * 110.36848 * 281.56662 * 5 4 2 30 30 H 1.08998 * 110.50771 * 217.37934 * 6 5 4 31 31 H 1.09001 * 110.51250 * 94.67092 * 6 5 4 32 32 H 1.08996 * 109.88167 * 61.60233 * 12 11 9 33 33 H 1.09004 * 109.88066 * 300.59300 * 12 11 9 34 34 H 1.08997 * 110.72234 * 140.47718 * 13 12 11 35 35 H 1.09001 * 110.71861 * 263.57412 * 13 12 11 36 36 H 0.96700 * 113.99958 * 61.45542 * 15 14 13 37 37 H 0.97007 * 119.99961 * 180.02562 * 19 18 16 38 38 H 1.09003 * 110.28922 * 37.03182 * 24 11 9 39 39 H 1.08998 * 110.53025 * 274.75729 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 8 2.0328 -0.7236 -1.1443 5 6 3.3873 -1.0871 -0.7995 6 6 3.3178 -1.5056 0.6858 7 6 2.0678 -0.7740 1.2240 8 1 2.3407 -0.0840 2.0224 9 6 1.0444 -1.7665 1.7123 10 8 0.8342 -2.7810 1.0817 11 7 0.3627 -1.5270 2.8501 12 6 0.5169 -0.3432 3.7083 13 6 -0.4417 -0.5131 4.9056 14 6 -0.6733 -2.0467 4.9505 15 8 0.3909 -2.7054 5.6402 16 6 -2.0039 -2.3740 5.5777 17 1 -2.7571 -2.8950 5.0053 18 6 -2.2597 -2.0082 6.8822 19 7 -1.3423 -1.3741 7.5793 20 14 -3.9088 -2.4145 7.6599 21 1 -3.8346 -3.7477 8.3098 22 1 -4.2432 -1.3858 8.6773 23 1 -4.9596 -2.4330 6.6108 24 6 -0.6646 -2.4070 3.4442 25 1 -0.3634 0.3806 0.9546 26 1 -0.3634 0.6363 -0.8069 27 1 -0.3634 -1.0170 -0.1476 28 1 3.7241 -1.9221 -1.4138 29 1 4.0528 -0.2327 -0.9241 30 1 4.2109 -1.1771 1.2173 31 1 3.1956 -2.5852 0.7731 32 1 0.2567 0.5559 3.1498 33 1 1.5451 -0.2742 4.0635 34 1 0.0266 -0.1667 5.8268 35 1 -1.3781 0.0159 4.7281 36 1 0.4864 -2.4367 6.5642 37 1 -1.5222 -1.1170 8.4972 38 1 -0.3918 -3.4533 3.3060 39 1 -1.6405 -2.2085 3.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592848073.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:08 Heat of formation + Delta-G solvation = -153.505425 kcal Electronic energy + Delta-G solvation = -21914.041403 eV Core-core repulsion = 18627.536655 eV Total energy + Delta-G solvation = -3286.504747 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.71470 -39.96286 -38.58407 -36.07629 -34.22231 -33.57449 -32.50660 -31.37478 -30.05039 -27.76608 -26.67099 -24.27625 -23.05759 -22.67551 -21.48226 -19.83650 -19.10467 -18.51289 -17.30562 -16.99211 -16.84336 -16.50613 -16.48243 -16.09758 -15.78673 -15.04718 -14.87701 -14.25678 -13.91972 -13.74018 -13.52226 -13.36617 -13.28052 -13.19603 -13.02323 -12.89652 -12.63785 -12.46246 -12.28783 -12.25211 -11.98287 -11.93385 -11.83743 -11.27963 -10.90271 -10.68371 -10.57983 -10.15654 -9.57606 -8.24471 -6.39116 1.41678 1.45304 1.53264 1.57698 2.02012 2.40196 2.90651 3.00663 3.37876 3.57444 3.73298 3.84488 3.98951 4.10372 4.19769 4.29980 4.33797 4.34541 4.36871 4.49042 4.57587 4.60964 4.70594 4.84284 4.87876 4.90728 4.93292 5.07381 5.14867 5.19839 5.29433 5.45133 5.55029 5.77143 5.89187 6.08706 6.61545 6.66143 7.16989 7.31129 7.39844 8.81368 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.041042 B = 0.004725 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.064553 B = 5924.090976 C = 6024.963507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.092 3.908 3 H 0.118 0.882 4 O -0.395 6.395 5 C 0.048 3.952 6 C -0.141 4.141 7 C -0.139 4.139 8 H 0.129 0.871 9 C 0.532 3.468 10 O -0.591 6.591 11 N -0.609 5.609 12 C 0.103 3.897 13 C -0.125 4.125 14 C 0.235 3.765 15 O -0.594 6.594 16 C -0.564 4.564 17 H 0.051 0.949 18 C 0.041 3.959 19 N -0.904 5.904 20 Si 0.957 3.043 21 H -0.281 1.281 22 H -0.276 1.276 23 H -0.273 1.273 24 C 0.125 3.875 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.034 0.966 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.378 0.622 37 H 0.271 0.729 38 H 0.040 0.960 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.337 8.807 -9.155 15.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.035 3.965 3 H 0.136 0.864 4 O -0.315 6.315 5 C -0.028 4.028 6 C -0.179 4.179 7 C -0.160 4.160 8 H 0.147 0.853 9 C 0.323 3.677 10 O -0.473 6.473 11 N -0.341 5.341 12 C -0.019 4.019 13 C -0.164 4.164 14 C 0.195 3.805 15 O -0.402 6.402 16 C -0.602 4.602 17 H 0.070 0.930 18 C -0.161 4.161 19 N -0.543 5.543 20 Si 0.783 3.217 21 H -0.207 1.207 22 H -0.201 1.201 23 H -0.198 1.198 24 C 0.003 3.997 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.053 0.947 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.133 0.867 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.227 0.773 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.268 8.026 -10.161 15.363 hybrid contribution -1.124 -0.490 1.508 1.944 sum 7.143 7.536 -8.654 13.517 Atomic orbital electron populations 1.21945 0.93979 1.01953 1.03534 1.23016 0.95073 0.95982 0.82461 0.86448 1.89138 1.28812 1.75112 1.38446 1.23565 0.83915 1.01252 0.94104 1.22969 0.96840 1.00648 0.97396 1.22923 0.94714 0.97293 1.01058 0.85328 1.20614 0.81473 0.86962 0.78686 1.90643 1.68582 1.30641 1.57399 1.48792 1.39019 1.23126 1.23172 1.22268 1.00661 0.87330 0.91627 1.22942 0.98253 0.98498 0.96690 1.19759 0.85378 0.88900 0.86495 1.86138 1.55299 1.69933 1.28831 1.21662 1.00306 1.39323 0.98919 0.93023 1.25547 1.00171 0.93408 0.97007 1.69766 1.34971 1.39083 1.10497 0.85576 0.80046 0.77917 0.78169 1.20680 1.20108 1.19770 1.22146 0.90570 0.93496 0.93532 0.90365 0.89887 0.94703 0.88764 0.88775 0.86729 0.92525 0.89057 0.90603 0.90460 0.91840 0.77301 0.91919 0.94151 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.11 8.55 71.98 0.62 -3.49 16 2 C 0.09 2.17 3.83 31.09 0.12 2.29 16 3 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 4 O -0.40 -10.91 11.34 -148.98 -1.69 -12.60 16 5 C 0.05 0.97 7.63 72.48 0.55 1.52 16 6 C -0.14 -3.22 6.59 31.61 0.21 -3.01 16 7 C -0.14 -3.56 3.18 -10.53 -0.03 -3.60 16 8 H 0.13 2.56 6.79 -2.39 -0.02 2.54 16 9 C 0.53 19.72 4.82 87.65 0.42 20.15 16 10 O -0.59 -27.14 15.92 -3.05 -0.05 -27.19 16 11 N -0.61 -23.24 3.34 -811.04 -2.71 -25.94 16 12 C 0.10 3.31 5.98 86.73 0.52 3.83 16 13 C -0.13 -5.08 5.38 31.78 0.17 -4.90 16 14 C 0.23 11.24 0.87 -10.16 -0.01 11.23 16 15 O -0.59 -30.19 13.16 -148.98 -1.96 -32.15 16 16 C -0.56 -29.46 8.27 25.60 0.21 -29.25 16 17 H 0.05 2.75 7.79 -2.91 -0.02 2.72 16 18 C 0.04 2.04 5.29 84.66 0.45 2.48 16 19 N -0.90 -45.21 10.76 21.45 0.23 -44.98 16 20 Si 0.96 40.72 29.54 68.60 2.03 42.75 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 24 C 0.13 5.72 6.10 86.78 0.53 6.25 16 25 H 0.08 1.92 7.60 -2.38 -0.02 1.91 16 26 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.03 1.18 6.96 -2.38 -0.02 1.16 16 28 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.06 1.67 7.21 -2.39 -0.02 1.65 16 32 H 0.09 2.28 7.72 -2.39 -0.02 2.26 16 33 H 0.08 2.19 7.83 -2.38 -0.02 2.17 16 34 H 0.08 3.27 7.54 -2.39 -0.02 3.25 16 35 H 0.06 2.60 8.04 -2.39 -0.02 2.58 16 36 H 0.38 19.03 7.56 -74.06 -0.56 18.47 16 37 H 0.27 12.91 8.31 -92.70 -0.77 12.14 16 38 H 0.04 2.03 8.05 -2.39 -0.02 2.01 16 39 H 0.07 3.14 8.03 -2.39 -0.02 3.12 16 Total: -1.00 -64.97 312.00 0.10 -64.88 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: 0.49 Total: 31.74 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 3.76 Total: 3.50 kcal Atomic # 7 Polarization: -68.45 SS G_CDS: -2.48 Total: -70.93 kcal Atomic # 8 Polarization: -68.24 SS G_CDS: -3.70 Total: -71.94 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -64.97 0.10 -64.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848073.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.629 kcal (2) G-P(sol) polarization free energy of solvation -64.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds