Wall clock time and date at job start Mon Mar 30 2020 01:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 110.67119 * 2 1 4 4 O 1.44376 * 110.61903 * 237.03917 * 2 1 3 5 5 C 1.43738 * 106.97760 * 201.43903 * 4 2 1 6 6 C 1.54106 * 107.29454 * 26.50984 * 5 4 2 7 7 C 1.54818 * 104.18506 * 357.97376 * 6 5 4 8 8 H 1.08995 * 110.90480 * 97.34820 * 7 6 5 9 9 C 1.50700 * 110.90712 * 220.92125 * 7 6 5 10 10 O 1.21283 * 119.99803 * 118.54463 * 9 7 6 11 11 N 1.34777 * 119.99675 * 298.82339 * 9 7 6 12 12 C 1.47423 * 125.64829 * 359.41380 * 11 9 7 13 13 C 1.55137 * 104.71983 * 155.82193 * 12 11 9 14 14 C 1.55161 * 101.48526 * 37.29517 * 13 12 11 15 15 O 1.42901 * 110.87347 * 82.76687 * 14 13 12 16 16 C 1.50701 * 110.71904 * 205.96997 * 14 13 12 17 17 H 1.08003 * 119.99846 * 113.51825 * 16 14 13 18 18 C 1.37872 * 120.00164 * 293.52468 * 16 14 13 19 19 N 1.31520 * 120.00030 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 120.00268 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47069 * 59.99568 * 20 18 16 22 22 H 1.48506 * 109.46840 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46726 * 299.99517 * 20 18 16 24 24 C 1.47019 * 125.64379 * 179.72980 * 11 9 7 25 25 H 1.08995 * 109.47290 * 297.03273 * 1 2 3 26 26 H 1.09004 * 109.47319 * 57.03429 * 1 2 3 27 27 H 1.09005 * 109.46833 * 177.03098 * 1 2 3 28 28 H 1.09000 * 109.87659 * 267.09072 * 5 4 2 29 29 H 1.08998 * 110.00850 * 146.00655 * 5 4 2 30 30 H 1.09003 * 110.48776 * 239.30186 * 6 5 4 31 31 H 1.08999 * 110.59861 * 116.70457 * 6 5 4 32 32 H 1.09007 * 110.36652 * 274.74673 * 12 11 9 33 33 H 1.08993 * 110.36828 * 37.07553 * 12 11 9 34 34 H 1.08994 * 111.19025 * 279.18980 * 13 12 11 35 35 H 1.08997 * 110.93557 * 155.28921 * 13 12 11 36 36 H 0.96702 * 113.99785 * 66.39105 * 15 14 13 37 37 H 0.96994 * 120.00401 * 180.02562 * 19 18 16 38 38 H 1.09003 * 109.88210 * 300.43359 * 24 11 9 39 39 H 1.08999 * 109.89027 * 61.44819 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9149 1.0199 0.0000 4 8 2.0385 -0.7352 -1.1338 5 6 3.3839 -1.1253 -0.8119 6 6 3.4796 -1.2167 0.7235 7 6 2.0758 -0.7894 1.2171 8 1 1.4552 -1.6606 1.4263 9 6 2.1796 0.0979 2.4308 10 8 1.7552 1.2333 2.3901 11 7 2.7492 -0.3686 3.5598 12 6 3.2983 -1.7237 3.7485 13 6 4.3401 -1.5716 4.8880 14 6 3.6400 -0.5393 5.8109 15 8 2.6980 -1.1825 6.6717 16 6 4.6550 0.2311 6.6154 17 1 4.7904 1.2887 6.4433 18 6 5.4109 -0.4141 7.5711 19 7 5.2458 -1.7019 7.7810 20 14 6.6685 0.5411 8.5688 21 1 5.9846 1.6226 9.3223 22 1 7.3434 -0.3757 9.5225 23 1 7.6770 1.1356 7.6551 24 6 2.9198 0.3876 4.8090 25 1 -0.3633 0.4670 0.9153 26 1 -0.3634 0.5592 -0.8622 27 1 -0.3633 -1.0264 -0.0532 28 1 4.0853 -0.3781 -1.1831 29 1 3.6071 -2.0956 -1.2555 30 1 4.2407 -0.5331 1.0997 31 1 3.6985 -2.2383 1.0339 32 1 2.5089 -2.4153 4.0430 33 1 3.7835 -2.0670 2.8349 34 1 5.2840 -1.1800 4.5091 35 1 4.4921 -2.5187 5.4057 36 1 3.0998 -1.7764 7.3206 37 1 5.7772 -2.1557 8.4535 38 1 3.5245 1.2757 4.6250 39 1 1.9458 0.6775 5.2029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592848075.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:10 Heat of formation + Delta-G solvation = -133.862216 kcal Electronic energy + Delta-G solvation = -21719.997064 eV Core-core repulsion = 18434.344110 eV Total energy + Delta-G solvation = -3285.652954 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.38183 -38.67364 -37.17282 -34.45747 -32.49465 -32.20337 -31.55626 -29.74446 -28.37660 -26.62724 -25.00307 -22.92528 -21.83829 -21.46270 -19.72552 -18.87320 -17.32050 -17.13501 -16.04308 -15.76746 -15.28368 -15.16538 -14.94835 -14.27604 -14.04961 -13.86815 -13.76834 -13.04945 -12.52611 -12.42102 -12.22278 -12.01323 -11.99320 -11.56484 -11.48778 -11.42211 -11.26352 -11.07995 -10.91731 -10.82094 -10.57711 -10.54318 -10.17837 -9.74847 -9.52147 -9.35021 -8.71805 -8.27288 -8.08843 -6.35141 -4.42649 2.92637 3.18103 3.23198 3.25989 3.38853 3.78475 4.21976 4.45920 4.61890 4.73760 4.91497 4.96540 5.12191 5.17521 5.36346 5.48072 5.53948 5.57006 5.69550 5.71879 5.79244 5.85877 5.91130 5.95191 6.04740 6.17150 6.18557 6.39663 6.61958 6.81742 6.84054 6.89756 7.22961 7.27138 7.67855 7.93947 8.02735 8.51334 8.59779 9.25868 9.39484 10.72707 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034850 B = 0.004685 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.240908 B = 5974.927145 C = 6127.307902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.094 3.906 3 H 0.083 0.917 4 O -0.377 6.377 5 C 0.050 3.950 6 C -0.148 4.148 7 C -0.136 4.136 8 H 0.109 0.891 9 C 0.532 3.468 10 O -0.552 6.552 11 N -0.604 5.604 12 C 0.089 3.911 13 C -0.136 4.136 14 C 0.248 3.752 15 O -0.587 6.587 16 C -0.536 4.536 17 H 0.064 0.936 18 C 0.073 3.927 19 N -0.899 5.899 20 Si 0.904 3.096 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.122 3.878 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.386 0.614 37 H 0.270 0.730 38 H 0.071 0.929 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.461 -2.944 -11.831 12.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.036 3.964 3 H 0.101 0.899 4 O -0.296 6.296 5 C -0.027 4.027 6 C -0.186 4.186 7 C -0.158 4.158 8 H 0.127 0.873 9 C 0.320 3.680 10 O -0.431 6.431 11 N -0.336 5.336 12 C -0.034 4.034 13 C -0.175 4.175 14 C 0.208 3.792 15 O -0.397 6.397 16 C -0.575 4.575 17 H 0.082 0.918 18 C -0.129 4.129 19 N -0.538 5.538 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.200 1.200 24 C 0.000 4.000 25 H 0.096 0.904 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.238 0.762 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.184 -2.169 -12.341 12.928 hybrid contribution 1.378 -0.028 1.203 1.829 sum -1.806 -2.197 -11.138 11.495 Atomic orbital electron populations 1.21750 0.92680 1.02526 1.03000 1.22932 0.95557 0.95416 0.82455 0.89892 1.88858 1.27705 1.73932 1.39137 1.23108 0.84804 1.00516 0.94255 1.23013 0.96341 1.03421 0.95834 1.22869 0.98602 0.99803 0.94518 0.87339 1.19748 0.77875 0.87354 0.83057 1.90667 1.49436 1.19410 1.83579 1.48617 1.57485 1.15193 1.12345 1.22704 0.97308 0.83492 0.99860 1.23350 0.96520 1.02526 0.95122 1.19426 0.85330 0.88046 0.86426 1.86098 1.37865 1.64738 1.51018 1.21514 1.19706 0.96092 1.20150 0.91757 1.24982 0.96693 0.94944 0.96329 1.69559 1.41628 1.08523 1.34124 0.86452 0.80939 0.79730 0.79748 1.19946 1.21050 1.20046 1.22102 1.00518 0.95056 0.82302 0.90445 0.91830 0.92063 0.92236 0.89643 0.89937 0.89330 0.91892 0.91617 0.91410 0.89638 0.76152 0.91989 0.91026 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.66 37.16 0.36 -1.39 16 2 C 0.09 1.29 3.02 -25.67 -0.08 1.21 16 3 H 0.08 1.25 7.53 -51.93 -0.39 0.86 16 4 O -0.38 -5.05 11.22 -35.23 -0.40 -5.44 16 5 C 0.05 0.55 7.70 37.73 0.29 0.84 16 6 C -0.15 -1.75 5.05 -25.20 -0.13 -1.87 16 7 C -0.14 -1.90 2.44 -89.76 -0.22 -2.12 16 8 H 0.11 1.39 8.06 -51.93 -0.42 0.97 16 9 C 0.53 9.61 7.11 -10.98 -0.08 9.53 16 10 O -0.55 -11.55 16.01 5.55 0.09 -11.46 16 11 N -0.60 -11.53 3.32 -170.37 -0.57 -12.10 16 12 C 0.09 1.53 6.62 -2.41 -0.02 1.51 16 13 C -0.14 -2.82 5.69 -24.46 -0.14 -2.96 16 14 C 0.25 5.84 0.85 -89.93 -0.08 5.77 16 15 O -0.59 -14.56 13.09 -35.23 -0.46 -15.02 16 16 C -0.54 -13.73 8.21 -34.44 -0.28 -14.01 16 17 H 0.06 1.65 7.53 -52.48 -0.40 1.26 16 18 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 19 N -0.90 -22.56 10.70 55.43 0.59 -21.96 16 20 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 24 C 0.12 2.69 6.22 -3.06 -0.02 2.68 16 25 H 0.08 1.02 8.03 -51.93 -0.42 0.60 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.05 7.85 -51.93 -0.41 0.64 16 31 H 0.09 0.90 6.85 -51.93 -0.36 0.54 16 32 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 33 H 0.07 0.93 5.02 -51.93 -0.26 0.67 16 34 H 0.07 1.42 8.04 -51.93 -0.42 1.01 16 35 H 0.09 1.84 7.77 -51.93 -0.40 1.43 16 36 H 0.39 9.66 6.98 45.56 0.32 9.98 16 37 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 38 H 0.07 1.61 7.63 -51.93 -0.40 1.22 16 39 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 LS Contribution 311.44 15.07 4.69 4.69 Total: -1.00 -27.80 311.44 -6.76 -34.56 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -5.21 Total: 10.98 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -0.48 Total: 0.92 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.03 Total: -34.06 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.77 Total: -31.93 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.80 -6.76 -34.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848075.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.305 kcal (2) G-P(sol) polarization free energy of solvation -27.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds