Wall clock time and date at job start Mon Mar 30 2020 01:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 110.67119 * 2 1 4 4 O 1.44376 * 110.61903 * 237.03917 * 2 1 3 5 5 C 1.43738 * 106.97760 * 201.43903 * 4 2 1 6 6 C 1.54106 * 107.29454 * 26.50984 * 5 4 2 7 7 C 1.54818 * 104.18506 * 357.97376 * 6 5 4 8 8 H 1.08995 * 110.90480 * 97.34820 * 7 6 5 9 9 C 1.50700 * 110.90712 * 220.92125 * 7 6 5 10 10 O 1.21283 * 119.99803 * 118.54463 * 9 7 6 11 11 N 1.34777 * 119.99675 * 298.82339 * 9 7 6 12 12 C 1.47423 * 125.64829 * 359.41380 * 11 9 7 13 13 C 1.55137 * 104.71983 * 155.82193 * 12 11 9 14 14 C 1.55161 * 101.48526 * 37.29517 * 13 12 11 15 15 O 1.42901 * 110.87347 * 82.76687 * 14 13 12 16 16 C 1.50701 * 110.71904 * 205.96997 * 14 13 12 17 17 H 1.08003 * 119.99846 * 113.51825 * 16 14 13 18 18 C 1.37872 * 120.00164 * 293.52468 * 16 14 13 19 19 N 1.31520 * 120.00030 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 120.00268 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47069 * 59.99568 * 20 18 16 22 22 H 1.48506 * 109.46840 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46726 * 299.99517 * 20 18 16 24 24 C 1.47019 * 125.64379 * 179.72980 * 11 9 7 25 25 H 1.08995 * 109.47290 * 297.03273 * 1 2 3 26 26 H 1.09004 * 109.47319 * 57.03429 * 1 2 3 27 27 H 1.09005 * 109.46833 * 177.03098 * 1 2 3 28 28 H 1.09000 * 109.87659 * 267.09072 * 5 4 2 29 29 H 1.08998 * 110.00850 * 146.00655 * 5 4 2 30 30 H 1.09003 * 110.48776 * 239.30186 * 6 5 4 31 31 H 1.08999 * 110.59861 * 116.70457 * 6 5 4 32 32 H 1.09007 * 110.36652 * 274.74673 * 12 11 9 33 33 H 1.08993 * 110.36828 * 37.07553 * 12 11 9 34 34 H 1.08994 * 111.19025 * 279.18980 * 13 12 11 35 35 H 1.08997 * 110.93557 * 155.28921 * 13 12 11 36 36 H 0.96702 * 113.99785 * 66.39105 * 15 14 13 37 37 H 0.96994 * 120.00401 * 180.02562 * 19 18 16 38 38 H 1.09003 * 109.88210 * 300.43359 * 24 11 9 39 39 H 1.08999 * 109.89027 * 61.44819 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9149 1.0199 0.0000 4 8 2.0385 -0.7352 -1.1338 5 6 3.3839 -1.1253 -0.8119 6 6 3.4796 -1.2167 0.7235 7 6 2.0758 -0.7894 1.2171 8 1 1.4552 -1.6606 1.4263 9 6 2.1796 0.0979 2.4308 10 8 1.7552 1.2333 2.3901 11 7 2.7492 -0.3686 3.5598 12 6 3.2983 -1.7237 3.7485 13 6 4.3401 -1.5716 4.8880 14 6 3.6400 -0.5393 5.8109 15 8 2.6980 -1.1825 6.6717 16 6 4.6550 0.2311 6.6154 17 1 4.7904 1.2887 6.4433 18 6 5.4109 -0.4141 7.5711 19 7 5.2458 -1.7019 7.7810 20 14 6.6685 0.5411 8.5688 21 1 5.9846 1.6226 9.3223 22 1 7.3434 -0.3757 9.5225 23 1 7.6770 1.1356 7.6551 24 6 2.9198 0.3876 4.8090 25 1 -0.3633 0.4670 0.9153 26 1 -0.3634 0.5592 -0.8622 27 1 -0.3633 -1.0264 -0.0532 28 1 4.0853 -0.3781 -1.1831 29 1 3.6071 -2.0956 -1.2555 30 1 4.2407 -0.5331 1.0997 31 1 3.6985 -2.2383 1.0339 32 1 2.5089 -2.4153 4.0430 33 1 3.7835 -2.0670 2.8349 34 1 5.2840 -1.1800 4.5091 35 1 4.4921 -2.5187 5.4057 36 1 3.0998 -1.7764 7.3206 37 1 5.7772 -2.1557 8.4535 38 1 3.5245 1.2757 4.6250 39 1 1.9458 0.6775 5.2029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592848075.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:10 Heat of formation + Delta-G solvation = -153.563672 kcal Electronic energy + Delta-G solvation = -21720.851383 eV Core-core repulsion = 18434.344110 eV Total energy + Delta-G solvation = -3286.507273 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.67294 -40.01980 -38.76754 -36.19683 -34.16126 -33.63350 -32.53537 -31.36816 -30.03610 -27.87970 -26.64310 -24.34804 -22.84977 -22.73656 -21.45428 -20.28964 -19.18200 -18.48357 -17.28226 -17.03928 -16.95262 -16.57783 -16.27473 -15.96940 -15.44054 -15.19752 -14.91195 -14.69421 -13.98322 -13.82196 -13.51852 -13.38117 -13.30177 -13.23023 -13.12258 -12.87250 -12.66444 -12.48587 -12.30022 -12.23950 -12.12100 -11.96195 -11.68415 -11.30847 -10.95629 -10.67044 -10.61307 -10.14597 -9.66790 -8.26954 -6.41090 1.42235 1.44571 1.50476 1.51360 1.92851 2.38618 2.76953 2.98689 3.40144 3.57141 3.60328 3.82567 3.97803 4.00076 4.14901 4.16470 4.27321 4.37126 4.39930 4.55322 4.60598 4.64002 4.70253 4.83711 4.88620 4.92144 5.01511 5.04365 5.16629 5.20699 5.23059 5.44299 5.50793 5.75002 5.86361 6.04141 6.53503 6.62793 7.04488 7.29953 7.43366 8.79300 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034850 B = 0.004685 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.240908 B = 5974.927145 C = 6127.307902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.094 3.906 3 H 0.062 0.938 4 O -0.385 6.385 5 C 0.047 3.953 6 C -0.146 4.146 7 C -0.130 4.130 8 H 0.129 0.871 9 C 0.530 3.470 10 O -0.586 6.586 11 N -0.607 5.607 12 C 0.099 3.901 13 C -0.127 4.127 14 C 0.235 3.765 15 O -0.595 6.595 16 C -0.565 4.565 17 H 0.051 0.949 18 C 0.039 3.961 19 N -0.907 5.907 20 Si 0.958 3.042 21 H -0.279 1.279 22 H -0.277 1.277 23 H -0.273 1.273 24 C 0.128 3.872 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.113 0.887 30 H 0.071 0.929 31 H 0.114 0.886 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.383 0.617 37 H 0.274 0.726 38 H 0.058 0.942 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.887 -4.465 -13.151 14.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.036 3.964 3 H 0.080 0.920 4 O -0.304 6.304 5 C -0.029 4.029 6 C -0.183 4.183 7 C -0.151 4.151 8 H 0.147 0.853 9 C 0.320 3.680 10 O -0.467 6.467 11 N -0.339 5.339 12 C -0.023 4.023 13 C -0.166 4.166 14 C 0.195 3.805 15 O -0.406 6.406 16 C -0.603 4.603 17 H 0.070 0.930 18 C -0.162 4.162 19 N -0.547 5.547 20 Si 0.784 3.216 21 H -0.204 1.204 22 H -0.202 1.202 23 H -0.198 1.198 24 C 0.005 3.995 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.131 0.869 30 H 0.090 0.910 31 H 0.132 0.868 32 H 0.090 0.910 33 H 0.124 0.876 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.234 0.766 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.608 -3.710 -13.681 14.413 hybrid contribution 1.191 0.485 1.619 2.067 sum -1.417 -3.225 -12.062 12.566 Atomic orbital electron populations 1.21724 0.91801 1.03491 1.02704 1.22846 0.96341 0.94498 0.82699 0.91990 1.88856 1.28955 1.73758 1.38862 1.23303 0.83777 1.02174 0.93650 1.23063 0.94350 1.04485 0.96450 1.22890 1.00661 0.99395 0.92187 0.85335 1.20534 0.76510 0.87422 0.83573 1.90650 1.50659 1.21282 1.84144 1.48662 1.58049 1.15580 1.11636 1.22732 0.96651 0.82554 1.00329 1.23135 0.96952 1.00917 0.95623 1.19584 0.85227 0.88988 0.86699 1.86083 1.38426 1.64759 1.51286 1.21734 1.21050 0.95921 1.21613 0.93025 1.25560 0.97966 0.95790 0.96886 1.69610 1.41839 1.09065 1.34165 0.85608 0.78960 0.78543 0.78486 1.20440 1.20170 1.19780 1.21804 0.98982 0.94935 0.83761 0.91869 0.90909 0.90567 0.91731 0.86850 0.91026 0.86777 0.91038 0.87627 0.92026 0.90446 0.76553 0.91687 0.92329 0.93979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.66 71.98 0.70 -2.54 16 2 C 0.09 2.44 3.02 31.28 0.09 2.53 16 3 H 0.06 1.86 7.53 -2.38 -0.02 1.84 16 4 O -0.38 -9.26 11.22 -148.98 -1.67 -10.94 16 5 C 0.05 0.87 7.70 72.36 0.56 1.43 16 6 C -0.15 -2.94 5.05 31.59 0.16 -2.78 16 7 C -0.13 -3.32 2.44 -10.24 -0.02 -3.34 16 8 H 0.13 2.83 8.06 -2.39 -0.02 2.81 16 9 C 0.53 18.74 7.11 87.66 0.62 19.36 16 10 O -0.59 -24.88 16.01 -3.04 -0.05 -24.93 16 11 N -0.61 -22.75 3.32 -811.33 -2.70 -25.45 16 12 C 0.10 3.19 6.62 86.94 0.58 3.76 16 13 C -0.13 -5.17 5.69 32.07 0.18 -4.99 16 14 C 0.24 11.20 0.85 -10.35 -0.01 11.19 16 15 O -0.60 -29.90 13.09 -148.98 -1.95 -31.85 16 16 C -0.57 -29.42 8.21 25.60 0.21 -29.21 16 17 H 0.05 2.74 7.53 -2.91 -0.02 2.71 16 18 C 0.04 1.97 5.28 84.65 0.45 2.42 16 19 N -0.91 -45.23 10.70 21.45 0.23 -45.00 16 20 Si 0.96 40.56 29.54 68.60 2.03 42.58 16 21 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 22 H -0.28 -11.27 7.11 99.48 0.71 -10.57 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 24 C 0.13 5.80 6.22 86.73 0.54 6.34 16 25 H 0.06 1.63 8.03 -2.39 -0.02 1.61 16 26 H 0.07 1.51 8.14 -2.38 -0.02 1.50 16 27 H 0.08 1.51 8.14 -2.38 -0.02 1.50 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.07 1.64 7.85 -2.39 -0.02 1.62 16 31 H 0.11 1.73 6.85 -2.39 -0.02 1.72 16 32 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 33 H 0.11 2.57 5.02 -2.39 -0.01 2.56 16 34 H 0.06 2.54 8.04 -2.39 -0.02 2.52 16 35 H 0.08 3.26 7.77 -2.39 -0.02 3.24 16 36 H 0.38 19.37 6.98 -74.06 -0.52 18.85 16 37 H 0.27 12.98 8.31 -92.71 -0.77 12.21 16 38 H 0.06 2.75 7.63 -2.39 -0.02 2.73 16 39 H 0.04 2.02 8.07 -2.39 -0.02 2.00 16 Total: -1.00 -60.11 311.44 0.47 -59.63 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: 0.54 Total: 31.78 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 4.05 Total: 4.17 kcal Atomic # 7 Polarization: -67.98 SS G_CDS: -2.47 Total: -70.45 kcal Atomic # 8 Polarization: -64.05 SS G_CDS: -3.67 Total: -67.72 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.58 kcal Total: -60.11 0.47 -59.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848075.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.930 kcal (2) G-P(sol) polarization free energy of solvation -60.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds