Wall clock time and date at job start Mon Mar 30 2020 01:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.87290 * 2 1 4 4 C 1.54100 * 110.00469 * 238.91250 * 2 1 3 5 5 C 1.54810 * 104.18708 * 238.47236 * 4 2 1 6 6 H 1.08996 * 110.90825 * 97.31808 * 5 4 2 7 7 C 1.50709 * 110.93907 * 220.90484 * 5 4 2 8 8 O 1.21280 * 119.99631 * 79.51162 * 7 5 4 9 9 N 1.34769 * 119.99920 * 259.51562 * 7 5 4 10 10 C 1.47422 * 125.65022 * 5.25495 * 9 7 5 11 11 C 1.54913 * 104.83183 * 204.09107 * 10 9 7 12 12 C 1.55162 * 101.58085 * 322.98898 * 11 10 9 13 13 O 1.42902 * 110.72049 * 277.13615 * 12 11 10 14 14 C 1.50700 * 110.71729 * 153.86485 * 12 11 10 15 15 H 1.08007 * 119.99629 * 241.44799 * 14 12 11 16 16 C 1.37880 * 120.00156 * 61.45943 * 14 12 11 17 17 N 1.31513 * 119.99965 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99953 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47010 * 89.99368 * 18 16 14 20 20 H 1.48497 * 109.46969 * 209.99432 * 18 16 14 21 21 H 1.48503 * 109.46776 * 329.99568 * 18 16 14 22 22 C 1.47022 * 125.64673 * 184.94389 * 9 7 5 23 23 C 1.54995 * 102.09595 * 339.11819 * 5 4 2 24 24 O 1.43746 * 109.88561 * 121.00492 * 2 1 3 25 25 H 1.09002 * 109.46755 * 300.69984 * 1 2 3 26 26 H 1.08997 * 109.47265 * 60.70225 * 1 2 3 27 27 H 1.09003 * 109.46718 * 180.70407 * 1 2 3 28 28 H 1.08995 * 110.48813 * 357.15358 * 4 2 1 29 29 H 1.09007 * 110.48903 * 119.79629 * 4 2 1 30 30 H 1.09000 * 110.36770 * 322.92570 * 10 9 7 31 31 H 1.08996 * 110.36887 * 85.25656 * 10 9 7 32 32 H 1.08999 * 111.00604 * 81.06528 * 11 10 9 33 33 H 1.08996 * 111.00703 * 204.87622 * 11 10 9 34 34 H 0.96699 * 113.99896 * 298.55008 * 13 12 11 35 35 H 0.97001 * 120.00203 * 180.02562 * 17 16 14 36 36 H 1.09004 * 109.88463 * 298.39318 * 22 9 7 37 37 H 1.08999 * 109.88293 * 59.55736 * 22 9 7 38 38 H 1.09001 * 110.61751 * 278.52548 * 23 5 4 39 39 H 1.09001 * 110.75419 * 155.58703 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0571 -0.7477 -1.2401 5 6 2.9244 -1.8887 -0.6549 6 1 2.3608 -2.8205 -0.6074 7 6 4.1891 -2.0684 -1.4546 8 8 5.1269 -1.3190 -1.2825 9 7 4.2777 -3.0617 -2.3611 10 6 3.1842 -3.9714 -2.7487 11 6 3.8945 -5.2393 -3.2850 12 6 5.1175 -4.6255 -4.0164 13 8 4.7573 -4.1965 -5.3311 14 6 6.2569 -5.6104 -4.0688 15 1 7.1968 -5.3747 -3.5917 16 6 6.0996 -6.8123 -4.7259 17 7 4.9550 -7.0994 -5.3065 18 14 7.5122 -8.0328 -4.7914 19 1 7.4326 -8.9453 -3.6224 20 1 7.4243 -8.8248 -6.0445 21 1 8.8026 -7.2986 -4.7593 22 6 5.4792 -3.4135 -3.1320 23 6 3.2399 -1.3601 0.7676 24 8 2.0189 -0.6963 1.1586 25 1 -0.3633 0.5247 0.8837 26 1 -0.3633 0.5029 -0.8962 27 1 -0.3633 -1.0276 0.0126 28 1 1.2294 -1.1563 -1.8196 29 1 2.6644 -0.0843 -1.8560 30 1 2.5709 -4.2181 -1.8821 31 1 2.5738 -3.5194 -3.5304 32 1 4.2124 -5.8849 -2.4662 33 1 3.2539 -5.7812 -3.9807 34 1 4.4467 -4.9092 -5.9061 35 1 4.8442 -7.9451 -5.7685 36 1 5.7781 -2.5721 -3.7571 37 1 6.2897 -3.6806 -2.4539 38 1 4.0690 -0.6530 0.7391 39 1 3.4628 -2.1842 1.4453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592850667.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:09 Heat of formation + Delta-G solvation = -155.726379 kcal Electronic energy + Delta-G solvation = -21448.989122 eV Core-core repulsion = 18162.388067 eV Total energy + Delta-G solvation = -3286.601055 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.60329 -40.11987 -38.80375 -36.14073 -34.22343 -33.57267 -32.70952 -31.28696 -30.06755 -27.26957 -26.91940 -24.69640 -23.34537 -22.12189 -21.50360 -20.15957 -19.23370 -18.52782 -17.38708 -16.98058 -16.92930 -16.44291 -16.33872 -16.07563 -15.65792 -15.14089 -14.83641 -14.56364 -13.95244 -13.90122 -13.52447 -13.36827 -13.26566 -13.20806 -13.13301 -12.91895 -12.66853 -12.48189 -12.35383 -12.28914 -12.00820 -11.89637 -11.77229 -11.29152 -10.94927 -10.71674 -10.62814 -10.15699 -9.68629 -8.25785 -6.40138 1.40741 1.44388 1.44781 1.52886 1.91917 2.38975 2.79068 2.99984 3.42497 3.56038 3.65601 3.83570 3.94412 3.97335 4.07476 4.15453 4.26928 4.40934 4.43569 4.56018 4.61553 4.63787 4.70912 4.81438 4.86783 4.89121 4.94333 5.10930 5.14250 5.22264 5.32738 5.44893 5.52723 5.75182 5.85064 6.06683 6.52450 6.63623 7.03152 7.30038 7.39183 8.80122 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039111 B = 0.004309 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.730295 B = 6496.339371 C = 6691.521636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 H 0.071 0.929 4 C -0.132 4.132 5 C -0.135 4.135 6 H 0.126 0.874 7 C 0.530 3.470 8 O -0.589 6.589 9 N -0.608 5.608 10 C 0.102 3.898 11 C -0.125 4.125 12 C 0.235 3.765 13 O -0.593 6.593 14 C -0.565 4.565 15 H 0.050 0.950 16 C 0.041 3.959 17 N -0.904 5.904 18 Si 0.957 3.043 19 H -0.273 1.273 20 H -0.278 1.278 21 H -0.278 1.278 22 C 0.128 3.872 23 C 0.067 3.933 24 O -0.382 6.382 25 H 0.065 0.935 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.109 0.891 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.380 0.620 35 H 0.272 0.728 36 H 0.042 0.958 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.836 6.834 7.718 14.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.012 3.988 3 H 0.089 0.911 4 C -0.170 4.170 5 C -0.156 4.156 6 H 0.144 0.856 7 C 0.320 3.680 8 O -0.471 6.471 9 N -0.340 5.340 10 C -0.019 4.019 11 C -0.164 4.164 12 C 0.195 3.805 13 O -0.401 6.401 14 C -0.604 4.604 15 H 0.068 0.932 16 C -0.161 4.161 17 N -0.542 5.542 18 Si 0.783 3.217 19 H -0.198 1.198 20 H -0.203 1.203 21 H -0.204 1.204 22 C 0.005 3.995 23 C -0.010 4.010 24 O -0.302 6.302 25 H 0.084 0.916 26 H 0.106 0.894 27 H 0.085 0.915 28 H 0.127 0.873 29 H 0.086 0.914 30 H 0.120 0.880 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.230 0.770 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.384 7.727 8.198 15.322 hybrid contribution 1.195 -1.298 -0.811 1.942 sum -9.189 6.430 7.387 13.429 Atomic orbital electron populations 1.21934 0.91473 1.03451 1.03431 1.22900 0.96712 0.95655 0.83561 0.91132 1.22984 0.99610 0.95653 0.98734 1.22879 0.93637 1.03008 0.96064 0.85620 1.20537 0.89618 0.78578 0.79228 1.90646 1.41910 1.45512 1.69006 1.48731 1.13759 1.32298 1.39185 1.22595 0.89159 0.89707 1.00472 1.23082 0.98033 0.95374 0.99902 1.19599 0.92231 0.88364 0.80282 1.86128 1.88064 1.40128 1.25825 1.21721 0.99635 1.02379 1.36625 0.93187 1.25543 0.98060 0.98856 0.93677 1.69742 1.24516 1.24933 1.35047 0.85578 0.79572 0.78739 0.77840 1.19843 1.20323 1.20354 1.21808 0.87532 0.97103 0.93104 1.23413 0.87713 0.97110 0.92802 1.88863 1.39389 1.67868 1.34052 0.91596 0.89429 0.91454 0.87297 0.91428 0.87984 0.90724 0.92337 0.90049 0.77043 0.91848 0.93965 0.92209 0.92143 0.87173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.37 71.98 0.67 -1.44 16 2 C 0.07 1.38 4.05 30.96 0.13 1.51 16 3 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 4 C -0.13 -2.83 6.22 31.58 0.20 -2.64 16 5 C -0.13 -3.42 3.14 -10.24 -0.03 -3.45 16 6 H 0.13 2.66 6.42 -2.39 -0.02 2.64 16 7 C 0.53 18.79 6.83 87.66 0.60 19.39 16 8 O -0.59 -25.24 16.34 -3.03 -0.05 -25.29 16 9 N -0.61 -22.87 3.33 -811.78 -2.70 -25.57 16 10 C 0.10 3.31 6.71 86.86 0.58 3.89 16 11 C -0.13 -5.11 5.47 31.99 0.17 -4.93 16 12 C 0.24 11.18 0.84 -10.35 -0.01 11.17 16 13 O -0.59 -29.32 13.06 -148.98 -1.95 -31.27 16 14 C -0.57 -29.56 8.22 25.60 0.21 -29.35 16 15 H 0.05 2.68 7.58 -2.91 -0.02 2.65 16 16 C 0.04 2.03 5.28 84.66 0.45 2.48 16 17 N -0.90 -44.93 10.69 21.45 0.23 -44.70 16 18 Si 0.96 40.72 29.54 68.60 2.03 42.75 16 19 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 22 C 0.13 5.77 6.23 86.73 0.54 6.31 16 23 C 0.07 1.68 7.09 72.66 0.52 2.20 16 24 O -0.38 -9.35 11.19 -148.98 -1.67 -11.02 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.11 1.84 7.70 -2.39 -0.02 1.83 16 29 H 0.07 1.66 7.85 -2.38 -0.02 1.64 16 30 H 0.10 2.52 6.64 -2.39 -0.02 2.50 16 31 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.06 2.47 8.04 -2.39 -0.02 2.45 16 33 H 0.08 3.44 7.54 -2.39 -0.02 3.42 16 34 H 0.38 18.70 7.49 -74.06 -0.55 18.14 16 35 H 0.27 12.87 8.31 -92.71 -0.77 12.10 16 36 H 0.04 2.03 8.07 -2.39 -0.02 2.01 16 37 H 0.06 2.81 7.66 -2.39 -0.02 2.79 16 38 H 0.06 1.74 7.29 -2.39 -0.02 1.73 16 39 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -60.39 314.35 0.42 -59.97 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: 0.50 Total: 29.98 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 4.03 Total: 5.14 kcal Atomic # 7 Polarization: -67.80 SS G_CDS: -2.47 Total: -70.27 kcal Atomic # 8 Polarization: -63.91 SS G_CDS: -3.66 Total: -67.57 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -60.39 0.42 -59.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850667.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.754 kcal (2) G-P(sol) polarization free energy of solvation -60.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds