Wall clock time and date at job start Mon Mar 30 2020 01:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.33015 * 2 1 4 4 C 1.54470 * 110.37538 * 237.63040 * 2 1 3 5 5 C 1.54512 * 104.06341 * 217.19271 * 4 2 1 6 6 H 1.08997 * 110.62910 * 118.70230 * 5 4 2 7 7 C 1.50703 * 110.50766 * 241.35281 * 5 4 2 8 8 O 1.21281 * 120.00442 * 356.09444 * 7 5 4 9 9 N 1.34780 * 119.99575 * 176.09548 * 7 5 4 10 10 C 1.47024 * 125.65192 * 359.95712 * 9 7 5 11 11 C 1.54316 * 107.27264 * 181.09616 * 10 9 7 12 12 C 1.55158 * 102.94556 * 22.19459 * 11 10 9 13 13 O 1.42898 * 111.03745 * 82.58259 * 12 11 10 14 14 C 1.50694 * 111.00664 * 206.42664 * 12 11 10 15 15 H 1.08007 * 120.00217 * 16.94238 * 14 12 11 16 16 C 1.37877 * 120.00312 * 196.66831 * 14 12 11 17 17 N 1.31510 * 120.00677 * 183.72154 * 16 14 12 18 18 Si 1.86810 * 119.99575 * 3.72152 * 16 14 12 19 19 H 1.48497 * 109.46888 * 84.47265 * 18 16 14 20 20 H 1.48498 * 109.46904 * 204.47166 * 18 16 14 21 21 H 1.48497 * 109.47315 * 324.47483 * 18 16 14 22 22 C 1.47423 * 125.64769 * 179.97438 * 9 7 5 23 23 C 1.54476 * 104.06478 * 359.97438 * 5 4 2 24 24 O 1.44429 * 104.80114 * 23.98207 * 23 5 4 25 25 H 1.08999 * 109.47775 * 299.20784 * 1 2 3 26 26 H 1.09005 * 109.46853 * 59.20601 * 1 2 3 27 27 H 1.09000 * 109.47307 * 179.20066 * 1 2 3 28 28 H 1.09005 * 110.51601 * 98.54817 * 4 2 1 29 29 H 1.08999 * 110.51490 * 335.83352 * 4 2 1 30 30 H 1.08996 * 109.88112 * 300.51816 * 10 9 7 31 31 H 1.09005 * 109.87862 * 61.52425 * 10 9 7 32 32 H 1.09007 * 110.72191 * 263.82995 * 11 10 9 33 33 H 1.08997 * 110.72388 * 140.55690 * 11 10 9 34 34 H 0.96704 * 113.99755 * 69.27980 * 13 12 11 35 35 H 0.96993 * 120.00410 * 179.97438 * 17 16 14 36 36 H 1.09009 * 110.36744 * 36.99849 * 22 9 7 37 37 H 1.08997 * 110.37358 * 274.67453 * 22 9 7 38 38 H 1.08995 * 110.37176 * 142.80767 * 23 5 4 39 39 H 1.08997 * 110.37506 * 265.04196 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0678 -0.7753 -1.2230 5 6 3.3177 -1.5064 -0.6841 6 1 3.1979 -2.5863 -0.7703 7 6 4.5526 -1.0531 -1.4196 8 8 4.4560 -0.2754 -2.3452 9 7 5.7643 -1.5120 -1.0486 10 6 6.0246 -2.4528 0.0508 11 6 7.5515 -2.6655 0.1201 12 6 8.1110 -1.3973 -0.5770 13 8 8.1697 -0.2961 0.3318 14 6 9.4642 -1.6666 -1.1831 15 1 9.7926 -2.6833 -1.3409 16 6 10.2808 -0.6150 -1.5413 17 7 11.4299 -0.8480 -2.1369 18 14 9.7549 1.1408 -1.1805 19 1 10.1314 1.4941 0.2119 20 1 10.4320 2.0645 -2.1258 21 1 8.2834 1.2597 -1.3406 22 6 7.0484 -1.1534 -1.6778 23 6 3.3877 -1.0858 0.8006 24 8 2.0331 -0.7217 1.1451 25 1 -0.3634 0.5015 0.8970 26 1 -0.3633 0.5261 -0.8828 27 1 -0.3634 -1.0275 -0.0143 28 1 2.3430 -0.0860 -2.0214 29 1 1.3276 -1.4936 -1.5756 30 1 5.6657 -2.0332 0.9905 31 1 5.5245 -3.4011 -0.1466 32 1 7.8408 -3.5644 -0.4246 33 1 7.8872 -2.7161 1.1558 34 1 8.8368 -0.3935 1.0251 35 1 12.0042 -0.1082 -2.3892 36 1 7.0450 -0.1049 -1.9761 37 1 7.2406 -1.7930 -2.5392 38 1 3.7244 -1.9201 1.4158 39 1 4.0544 -0.2322 0.9223 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592850668.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:11 Heat of formation + Delta-G solvation = -153.540050 kcal Electronic energy + Delta-G solvation = -21792.282889 eV Core-core repulsion = 18505.776640 eV Total energy + Delta-G solvation = -3286.506249 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.69513 -40.14657 -38.94722 -36.44143 -34.51344 -33.43403 -32.95956 -31.62530 -30.08958 -27.49043 -26.64271 -24.89686 -23.24917 -22.18917 -21.56780 -20.21756 -19.47904 -18.65669 -17.40862 -17.09984 -16.94953 -16.72945 -16.27076 -16.15880 -15.97510 -15.27490 -14.88894 -14.58019 -14.20065 -14.09080 -13.87562 -13.54852 -13.34837 -13.29369 -13.09047 -12.93236 -12.69767 -12.41158 -12.36720 -12.18128 -11.90408 -11.86660 -11.81928 -11.19537 -10.97505 -10.86436 -10.78581 -10.27561 -9.64570 -8.41273 -6.55143 1.37553 1.46388 1.50155 1.67255 1.93129 2.35229 2.83608 2.92640 3.30541 3.40323 3.62727 3.69153 3.82362 3.95529 4.11458 4.16662 4.24330 4.30568 4.41726 4.49046 4.57230 4.62955 4.73245 4.82085 4.84164 4.89435 4.96525 4.99707 5.06525 5.16508 5.24353 5.26572 5.31206 5.50671 5.76636 6.00834 6.52919 6.58065 6.97736 7.04842 7.25391 8.71415 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033167 B = 0.005202 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.005064 B = 5381.050085 C = 5559.593884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.064 3.936 3 H 0.057 0.943 4 C -0.140 4.140 5 C -0.132 4.132 6 H 0.138 0.862 7 C 0.523 3.477 8 O -0.592 6.592 9 N -0.611 5.611 10 C 0.099 3.901 11 C -0.138 4.138 12 C 0.213 3.787 13 O -0.567 6.567 14 C -0.545 4.545 15 H 0.057 0.943 16 C 0.033 3.967 17 N -0.930 5.930 18 Si 0.988 3.012 19 H -0.269 1.269 20 H -0.336 1.336 21 H -0.276 1.276 22 C 0.116 3.884 23 C 0.061 3.939 24 O -0.378 6.378 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.384 0.616 35 H 0.268 0.732 36 H 0.041 0.959 37 H 0.068 0.932 38 H 0.129 0.871 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.858 -3.662 8.407 20.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.006 3.994 3 H 0.075 0.925 4 C -0.178 4.178 5 C -0.153 4.153 6 H 0.156 0.844 7 C 0.313 3.687 8 O -0.474 6.474 9 N -0.343 5.343 10 C -0.022 4.022 11 C -0.176 4.176 12 C 0.173 3.827 13 O -0.376 6.376 14 C -0.583 4.583 15 H 0.075 0.925 16 C -0.168 4.168 17 N -0.567 5.567 18 Si 0.822 3.178 19 H -0.194 1.194 20 H -0.269 1.269 21 H -0.203 1.203 22 C -0.007 4.007 23 C -0.016 4.016 24 O -0.297 6.297 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.122 0.878 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.234 0.766 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.147 0.853 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -19.419 -3.035 7.681 21.102 hybrid contribution 1.318 0.887 -0.403 1.639 sum -18.101 -2.148 7.277 19.627 Atomic orbital electron populations 1.21789 0.90872 1.03692 1.03304 1.23142 0.97058 0.94944 0.84231 0.92532 1.23027 0.95533 1.00367 0.98861 1.22701 0.91723 1.04419 0.96432 0.84391 1.20729 0.84404 0.79994 0.83608 1.90637 1.86532 1.37610 1.32578 1.48720 1.05524 1.45695 1.34342 1.22390 0.97190 0.93017 0.89602 1.23129 0.93338 0.98351 1.02736 1.20091 0.91740 0.84347 0.86558 1.86205 1.62018 1.45343 1.44061 1.21485 1.00097 0.94232 1.42518 0.92467 1.25760 0.94455 1.03564 0.93055 1.70038 1.12442 1.33860 1.40381 0.85100 0.77320 0.78469 0.76895 1.19449 1.26864 1.20280 1.22552 0.82298 0.99247 0.96631 1.23421 0.84644 1.00880 0.92668 1.89117 1.26875 1.74705 1.38988 0.91538 0.89778 0.90885 0.90480 0.87756 0.89332 0.88432 0.90253 0.88023 0.76578 0.92316 0.94090 0.91424 0.85278 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.52 71.98 0.69 -1.45 16 2 C 0.06 1.37 3.92 31.09 0.12 1.49 16 3 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 4 C -0.14 -3.16 6.21 31.61 0.20 -2.97 16 5 C -0.13 -3.11 3.01 -10.52 -0.03 -3.14 16 6 H 0.14 2.44 8.14 -2.39 -0.02 2.43 16 7 C 0.52 18.00 7.10 87.66 0.62 18.62 16 8 O -0.59 -25.70 15.55 -3.03 -0.05 -25.75 16 9 N -0.61 -21.17 3.33 -811.73 -2.70 -23.87 16 10 C 0.10 2.51 6.07 86.73 0.53 3.04 16 11 C -0.14 -4.18 6.14 31.78 0.20 -3.99 16 12 C 0.21 8.86 0.71 -10.14 -0.01 8.85 16 13 O -0.57 -22.89 8.90 -148.98 -1.33 -24.22 16 14 C -0.55 -28.12 8.83 25.60 0.23 -27.89 16 15 H 0.06 3.20 7.97 -2.91 -0.02 3.18 16 16 C 0.03 1.81 5.47 84.66 0.46 2.27 16 17 N -0.93 -55.54 13.96 21.45 0.30 -55.24 16 18 Si 0.99 48.39 24.75 68.60 1.70 50.09 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 20 H -0.34 -17.20 7.11 99.48 0.71 -16.50 16 21 H -0.28 -14.06 5.17 99.48 0.51 -13.54 16 22 C 0.12 5.04 5.80 86.86 0.50 5.54 16 23 C 0.06 1.34 5.69 72.48 0.41 1.75 16 24 O -0.38 -8.85 11.34 -148.98 -1.69 -10.54 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.08 1.06 8.14 -2.38 -0.02 1.05 16 27 H 0.07 1.00 8.12 -2.39 -0.02 0.98 16 28 H 0.08 2.16 6.51 -2.38 -0.02 2.15 16 29 H 0.10 1.82 7.86 -2.39 -0.02 1.80 16 30 H 0.09 1.85 6.15 -2.39 -0.01 1.83 16 31 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.08 2.45 7.97 -2.38 -0.02 2.43 16 33 H 0.10 2.59 8.14 -2.39 -0.02 2.58 16 34 H 0.38 13.20 8.59 -74.05 -0.64 12.56 16 35 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 36 H 0.04 2.06 6.30 -2.38 -0.02 2.04 16 37 H 0.07 3.05 8.03 -2.39 -0.02 3.03 16 38 H 0.13 2.06 7.12 -2.39 -0.02 2.05 16 39 H 0.05 1.21 7.86 -2.39 -0.02 1.19 16 Total: -1.00 -71.35 305.33 0.37 -70.97 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.22 Total: 16.43 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 3.92 Total: 2.12 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -2.40 Total: -79.11 kcal Atomic # 8 Polarization: -57.44 SS G_CDS: -3.06 Total: -60.51 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 1.70 Total: 50.09 kcal Total: -71.35 0.37 -70.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850668.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.568 kcal (2) G-P(sol) polarization free energy of solvation -71.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds