Wall clock time and date at job start Mon Mar 30 2020 01:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 110.37466 * 2 1 4 4 C 1.54003 * 110.32388 * 237.80945 * 2 1 3 5 5 N 1.47486 * 107.08454 * 242.41634 * 4 2 1 6 6 C 1.34781 * 127.03579 * 154.29172 * 5 4 2 7 7 O 1.21288 * 119.99677 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00343 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.47189 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47183 * 180.02562 * 9 8 6 11 11 C 1.50695 * 109.47602 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99681 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00742 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00642 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99411 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47429 * 90.00021 * 15 13 11 17 17 H 1.48505 * 109.46665 * 209.99991 * 15 13 11 18 18 H 1.48497 * 109.47463 * 329.99459 * 15 13 11 19 19 C 1.48113 * 105.93573 * 334.55302 * 5 4 2 20 20 C 1.54620 * 110.32598 * 122.19653 * 2 1 3 21 21 H 1.09004 * 110.73930 * 22.39064 * 20 2 1 22 22 C 1.50707 * 110.73402 * 259.25753 * 20 2 1 23 23 O 1.20826 * 119.99968 * 359.97438 * 22 20 2 24 24 O 1.34231 * 119.99935 * 179.97438 * 22 20 2 25 25 H 1.09005 * 109.47357 * 180.73314 * 1 2 3 26 26 H 1.08996 * 109.47211 * 300.73612 * 1 2 3 27 27 H 1.09005 * 109.47109 * 60.73533 * 1 2 3 28 28 H 1.08999 * 109.91434 * 123.05711 * 4 2 1 29 29 H 1.09002 * 110.07717 * 1.86290 * 4 2 1 30 30 H 1.09001 * 109.47046 * 300.00464 * 8 6 5 31 31 H 1.09008 * 109.46600 * 60.00211 * 8 6 5 32 32 H 1.09004 * 109.47219 * 300.00623 * 9 8 6 33 33 H 1.09000 * 109.47319 * 60.00289 * 9 8 6 34 34 H 1.09004 * 109.47186 * 300.00196 * 10 9 8 35 35 H 1.09003 * 109.47624 * 59.99775 * 10 9 8 36 36 H 0.96991 * 120.00544 * 180.02562 * 14 13 11 37 37 H 1.08997 * 110.66402 * 157.73301 * 19 5 4 38 38 H 1.08998 * 110.66769 * 280.85712 * 19 5 4 39 39 H 0.96694 * 117.00089 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9095 1.0217 0.0000 4 6 2.0649 -0.7694 -1.2222 5 7 2.8276 -1.9225 -0.7085 6 6 3.0576 -3.0903 -1.3408 7 8 2.6163 -3.2735 -2.4556 8 6 3.8640 -4.1681 -0.6632 9 6 3.9750 -5.3806 -1.5895 10 6 4.7931 -6.4750 -0.9013 11 6 4.9030 -7.6692 -1.8140 12 1 4.4356 -7.6496 -2.7874 13 6 5.6002 -8.7867 -1.4064 14 7 5.6957 -9.8290 -2.2026 15 14 6.4080 -8.8207 0.2776 16 1 5.4497 -9.3599 1.2756 17 1 7.6136 -9.6866 0.2308 18 1 6.8032 -7.4427 0.6650 19 6 3.2836 -1.5372 0.6470 20 6 2.0671 -0.7726 1.2270 21 1 1.3173 -1.4685 1.6034 22 6 2.4988 0.1813 2.3110 23 8 2.3971 1.3734 2.1424 24 8 2.9963 -0.2935 3.4637 25 1 -0.3634 -1.0276 0.0131 26 1 -0.3633 0.5252 0.8833 27 1 -0.3633 0.5024 -0.8965 28 1 2.7181 -0.1245 -1.8101 29 1 1.2354 -1.1175 -1.8376 30 1 4.8611 -3.7891 -0.4390 31 1 3.3706 -4.4628 0.2631 32 1 2.9777 -5.7594 -1.8133 33 1 4.4681 -5.0862 -2.5160 34 1 5.7905 -6.0965 -0.6773 35 1 4.2998 -6.7694 0.0250 36 1 6.1858 -10.6152 -1.9157 37 1 3.5026 -2.4217 1.2451 38 1 4.1553 -0.8854 0.5889 39 1 3.2600 0.3568 4.1290 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594467914.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:14 Heat of formation + Delta-G solvation = -142.475126 kcal Electronic energy + Delta-G solvation = -20468.880027 eV Core-core repulsion = 17182.853589 eV Total energy + Delta-G solvation = -3286.026438 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.15732 -39.77085 -37.79571 -36.51024 -34.33531 -33.16980 -32.03026 -30.70189 -28.75924 -26.57599 -25.08635 -23.52850 -22.34487 -20.38291 -19.97733 -19.23693 -18.55566 -17.56524 -16.86383 -16.68458 -16.22147 -15.68787 -15.24582 -14.69567 -14.18432 -14.09299 -13.88744 -13.57675 -13.41922 -12.99720 -12.63927 -12.57775 -12.38341 -12.03542 -11.97410 -11.64158 -11.49618 -11.42621 -11.14472 -11.02008 -10.93613 -10.78900 -10.02678 -9.85271 -9.70486 -9.47033 -9.13571 -8.86748 -8.50816 -6.00359 -3.98250 1.69732 2.43403 2.75587 2.94828 3.31666 3.38878 3.41544 3.82405 4.05703 4.39384 4.47282 4.70794 4.78175 4.81693 4.92281 5.05592 5.19090 5.31826 5.32878 5.39079 5.45336 5.51602 5.56975 5.64882 5.67077 5.85178 6.00604 6.05563 6.15062 6.54870 6.68105 6.91315 7.34753 7.41730 7.44409 7.45421 7.82749 8.26015 8.59495 9.06417 9.61575 11.13372 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025876 B = 0.003714 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.839029 B = 7536.233024 C = 8409.657552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.104 0.896 4 C 0.107 3.893 5 N -0.630 5.630 6 C 0.534 3.466 7 O -0.528 6.528 8 C -0.137 4.137 9 C -0.088 4.088 10 C -0.014 4.014 11 C -0.519 4.519 12 H 0.073 0.927 13 C 0.064 3.936 14 N -0.904 5.904 15 Si 0.881 3.119 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.266 1.266 19 C 0.116 3.884 20 C -0.099 4.099 21 H 0.124 0.876 22 C 0.493 3.507 23 O -0.510 6.510 24 O -0.511 6.511 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.015 0.985 35 H 0.011 0.989 36 H 0.262 0.738 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.414 22.853 11.958 26.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.122 0.878 4 C -0.016 4.016 5 N -0.367 5.367 6 C 0.325 3.675 7 O -0.402 6.402 8 C -0.177 4.177 9 C -0.126 4.126 10 C -0.051 4.051 11 C -0.557 4.557 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.544 5.544 15 Si 0.708 3.292 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.190 1.190 19 C -0.008 4.008 20 C -0.119 4.119 21 H 0.141 0.859 22 C 0.334 3.666 23 O -0.398 6.398 24 O -0.323 6.323 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.034 0.966 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.118 0.882 38 H 0.097 0.903 39 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -7.697 22.489 10.902 26.150 hybrid contribution 0.636 0.382 1.471 1.647 sum -7.061 22.871 12.372 26.945 Atomic orbital electron populations 1.21862 0.93270 1.02458 1.02563 1.22163 0.97248 1.00414 0.91581 0.87766 1.22118 0.96546 0.87190 0.95749 1.48918 1.55116 1.15401 1.17233 1.20934 0.79922 0.80859 0.85783 1.90718 1.51124 1.79064 1.19334 1.21889 0.99705 0.95119 1.01009 1.21290 1.01567 0.92318 0.97442 1.19601 0.94899 0.94415 0.96219 1.21160 1.33529 0.97689 1.03322 0.90927 1.25052 0.95963 0.95462 0.97161 1.69917 1.42640 1.05123 1.36690 0.86762 0.79198 0.78245 0.84947 1.20334 1.21451 1.19038 1.22339 0.94592 0.99962 0.83881 1.22281 1.00468 0.96977 0.92155 0.85851 1.23038 0.73169 0.88326 0.82068 1.90726 1.51269 1.17765 1.80010 1.84554 1.74947 1.45690 1.27128 0.92031 0.92202 0.91585 0.91320 0.89813 0.89284 0.89263 0.92025 0.92004 0.96645 0.97069 0.92783 0.88194 0.90324 0.72845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.90 37.16 0.33 -0.67 16 2 C -0.10 -0.75 3.00 -89.24 -0.27 -1.01 16 3 H 0.10 0.86 6.86 -51.93 -0.36 0.51 16 4 C 0.11 1.06 6.62 -2.98 -0.02 1.04 16 5 N -0.63 -7.32 3.29 -169.76 -0.56 -7.87 16 6 C 0.53 8.30 7.89 -10.98 -0.09 8.22 16 7 O -0.53 -10.39 16.31 5.55 0.09 -10.30 16 8 C -0.14 -2.10 4.63 -27.88 -0.13 -2.23 16 9 C -0.09 -1.81 4.44 -26.74 -0.12 -1.93 16 10 C -0.01 -0.33 4.04 -27.89 -0.11 -0.44 16 11 C -0.52 -15.10 9.66 -34.44 -0.33 -15.44 16 12 H 0.07 2.30 7.99 -52.48 -0.42 1.88 16 13 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 14 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 15 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 19 C 0.12 0.97 6.39 -2.13 -0.01 0.95 16 20 C -0.10 -0.73 3.10 -89.89 -0.28 -1.01 16 21 H 0.12 0.81 7.86 -51.93 -0.41 0.40 16 22 C 0.49 3.80 7.65 36.01 0.28 4.07 16 23 O -0.51 -5.30 16.20 -18.75 -0.30 -5.60 16 24 O -0.51 -2.92 13.42 -39.26 -0.53 -3.44 16 25 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.91 7.59 -51.93 -0.39 0.52 16 30 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.09 1.18 7.90 -51.92 -0.41 0.77 16 32 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 33 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 34 H 0.02 0.36 7.20 -51.93 -0.37 -0.02 16 35 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.10 0.74 7.23 -51.93 -0.38 0.36 16 38 H 0.08 0.59 8.05 -51.93 -0.42 0.18 16 39 H 0.41 0.70 9.10 45.56 0.41 1.12 16 LS Contribution 325.75 15.07 4.91 4.91 Total: -1.00 -36.09 325.75 -6.39 -42.48 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -5.25 Total: -2.93 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -0.85 Total: -6.64 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.22 Total: -35.43 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.74 Total: -19.35 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -36.09 -6.39 -42.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594467914.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.992 kcal (2) G-P(sol) polarization free energy of solvation -36.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds