Wall clock time and date at job start Mon Mar 30 2020 01:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 110.37466 * 2 1 4 4 C 1.54003 * 110.32388 * 237.80945 * 2 1 3 5 5 N 1.47486 * 107.08454 * 242.41634 * 4 2 1 6 6 C 1.34781 * 127.03579 * 154.29172 * 5 4 2 7 7 O 1.21288 * 119.99677 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00343 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.47189 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47183 * 180.02562 * 9 8 6 11 11 C 1.50695 * 109.47602 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99681 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00742 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00642 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99411 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47429 * 90.00021 * 15 13 11 17 17 H 1.48505 * 109.46665 * 209.99991 * 15 13 11 18 18 H 1.48497 * 109.47463 * 329.99459 * 15 13 11 19 19 C 1.48113 * 105.93573 * 334.55302 * 5 4 2 20 20 C 1.54620 * 110.32598 * 122.19653 * 2 1 3 21 21 H 1.09004 * 110.73930 * 22.39064 * 20 2 1 22 22 C 1.50707 * 110.73402 * 259.25753 * 20 2 1 23 23 O 1.20826 * 119.99968 * 359.97438 * 22 20 2 24 24 O 1.34231 * 119.99935 * 179.97438 * 22 20 2 25 25 H 1.09005 * 109.47357 * 180.73314 * 1 2 3 26 26 H 1.08996 * 109.47211 * 300.73612 * 1 2 3 27 27 H 1.09005 * 109.47109 * 60.73533 * 1 2 3 28 28 H 1.08999 * 109.91434 * 123.05711 * 4 2 1 29 29 H 1.09002 * 110.07717 * 1.86290 * 4 2 1 30 30 H 1.09001 * 109.47046 * 300.00464 * 8 6 5 31 31 H 1.09008 * 109.46600 * 60.00211 * 8 6 5 32 32 H 1.09004 * 109.47219 * 300.00623 * 9 8 6 33 33 H 1.09000 * 109.47319 * 60.00289 * 9 8 6 34 34 H 1.09004 * 109.47186 * 300.00196 * 10 9 8 35 35 H 1.09003 * 109.47624 * 59.99775 * 10 9 8 36 36 H 0.96991 * 120.00544 * 180.02562 * 14 13 11 37 37 H 1.08997 * 110.66402 * 157.73301 * 19 5 4 38 38 H 1.08998 * 110.66769 * 280.85712 * 19 5 4 39 39 H 0.96694 * 117.00089 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9095 1.0217 0.0000 4 6 2.0649 -0.7694 -1.2222 5 7 2.8276 -1.9225 -0.7085 6 6 3.0576 -3.0903 -1.3408 7 8 2.6163 -3.2735 -2.4556 8 6 3.8640 -4.1681 -0.6632 9 6 3.9750 -5.3806 -1.5895 10 6 4.7931 -6.4750 -0.9013 11 6 4.9030 -7.6692 -1.8140 12 1 4.4356 -7.6496 -2.7874 13 6 5.6002 -8.7867 -1.4064 14 7 5.6957 -9.8290 -2.2026 15 14 6.4080 -8.8207 0.2776 16 1 5.4497 -9.3599 1.2756 17 1 7.6136 -9.6866 0.2308 18 1 6.8032 -7.4427 0.6650 19 6 3.2836 -1.5372 0.6470 20 6 2.0671 -0.7726 1.2270 21 1 1.3173 -1.4685 1.6034 22 6 2.4988 0.1813 2.3110 23 8 2.3971 1.3734 2.1424 24 8 2.9963 -0.2935 3.4637 25 1 -0.3634 -1.0276 0.0131 26 1 -0.3633 0.5252 0.8833 27 1 -0.3633 0.5024 -0.8965 28 1 2.7181 -0.1245 -1.8101 29 1 1.2354 -1.1175 -1.8376 30 1 4.8611 -3.7891 -0.4390 31 1 3.3706 -4.4628 0.2631 32 1 2.9777 -5.7594 -1.8133 33 1 4.4681 -5.0862 -2.5160 34 1 5.7905 -6.0965 -0.6773 35 1 4.2998 -6.7694 0.0250 36 1 6.1858 -10.6152 -1.9157 37 1 3.5026 -2.4217 1.2451 38 1 4.1553 -0.8854 0.5889 39 1 3.2600 0.3568 4.1290 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594467914.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:14 Heat of formation + Delta-G solvation = -168.370651 kcal Electronic energy + Delta-G solvation = -20470.002941 eV Core-core repulsion = 17182.853589 eV Total energy + Delta-G solvation = -3287.149352 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.83482 -40.71679 -38.72056 -37.07459 -36.12911 -34.27006 -33.82123 -31.38096 -30.37215 -27.64441 -25.89087 -25.06203 -23.06667 -21.97662 -20.77613 -20.32490 -19.10760 -18.84847 -18.26915 -17.83366 -17.00679 -16.78441 -16.38312 -16.03328 -15.60276 -15.01123 -14.77342 -14.62979 -14.45489 -14.25462 -13.92125 -13.78012 -13.35599 -13.17117 -13.09899 -12.66584 -12.54737 -12.47835 -12.13322 -12.05083 -11.80489 -11.76979 -11.68538 -11.62554 -11.47354 -11.30287 -10.83703 -10.72814 -9.83070 -8.25554 -6.31337 1.12115 1.40789 1.44542 1.56526 1.59512 1.75674 2.18507 2.41441 3.09727 3.18284 3.37105 3.76351 3.82714 4.07681 4.13613 4.15522 4.24957 4.40751 4.47725 4.55915 4.66381 4.72325 4.73973 4.84002 4.92577 4.95135 4.98307 5.04436 5.06456 5.25161 5.34640 5.57592 5.62182 5.62359 5.70114 6.32242 6.41345 6.77679 6.99533 7.12142 7.33122 8.92230 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025876 B = 0.003714 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.839029 B = 7536.233024 C = 8409.657552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 H 0.102 0.898 4 C 0.103 3.897 5 N -0.624 5.624 6 C 0.533 3.467 7 O -0.584 6.584 8 C -0.126 4.126 9 C -0.081 4.081 10 C -0.008 4.008 11 C -0.540 4.540 12 H 0.018 0.982 13 C -0.004 4.004 14 N -0.958 5.958 15 Si 0.962 3.038 16 H -0.263 1.263 17 H -0.288 1.288 18 H -0.234 1.234 19 C 0.112 3.888 20 C -0.095 4.095 21 H 0.137 0.863 22 C 0.503 3.497 23 O -0.540 6.540 24 O -0.506 6.506 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.037 0.963 33 H 0.035 0.965 34 H 0.031 0.969 35 H 0.032 0.968 36 H 0.266 0.734 37 H 0.119 0.881 38 H 0.092 0.908 39 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.685 24.505 15.824 29.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.105 4.105 3 H 0.121 0.879 4 C -0.019 4.019 5 N -0.358 5.358 6 C 0.324 3.676 7 O -0.464 6.464 8 C -0.166 4.166 9 C -0.120 4.120 10 C -0.046 4.046 11 C -0.578 4.578 12 H 0.037 0.963 13 C -0.200 4.200 14 N -0.599 5.599 15 Si 0.784 3.216 16 H -0.188 1.188 17 H -0.214 1.214 18 H -0.157 1.157 19 C -0.011 4.011 20 C -0.115 4.115 21 H 0.154 0.846 22 C 0.346 3.654 23 O -0.430 6.430 24 O -0.320 6.320 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.135 0.865 31 H 0.139 0.861 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.137 0.863 38 H 0.110 0.890 39 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -6.970 24.199 14.826 29.223 hybrid contribution 0.369 -0.114 0.195 0.433 sum -6.601 24.085 15.021 29.143 Atomic orbital electron populations 1.21844 0.92609 1.02435 1.03040 1.22061 0.97704 0.99893 0.90853 0.87938 1.22239 0.96128 0.86778 0.96800 1.48820 1.54118 1.14427 1.18414 1.20906 0.79633 0.81924 0.85154 1.90703 1.53557 1.80361 1.21769 1.21733 1.01730 0.92694 1.00397 1.21059 0.99299 0.94033 0.97588 1.19540 0.96376 0.92902 0.95757 1.21570 1.33297 1.00497 1.02453 0.96335 1.26213 0.96591 0.94569 1.02623 1.70107 1.43988 1.06201 1.39634 0.85490 0.77907 0.79945 0.78251 1.18808 1.21387 1.15654 1.22620 0.95274 1.01172 0.82017 1.22243 1.00375 0.96930 0.91923 0.84557 1.22906 0.72513 0.87614 0.82415 1.90731 1.52649 1.18976 1.80680 1.84509 1.74288 1.46306 1.26900 0.92278 0.91562 0.91322 0.91050 0.91202 0.86516 0.86093 0.94424 0.94616 0.95048 0.95018 0.92533 0.86292 0.89005 0.70709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.90 71.98 0.64 -1.10 16 2 C -0.09 -1.18 3.00 -9.90 -0.03 -1.21 16 3 H 0.10 1.51 6.86 -2.39 -0.02 1.50 16 4 C 0.10 1.94 6.62 86.53 0.57 2.51 16 5 N -0.62 -13.21 3.29 -809.40 -2.66 -15.87 16 6 C 0.53 15.97 7.89 87.66 0.69 16.66 16 7 O -0.58 -23.63 16.31 -3.06 -0.05 -23.68 16 8 C -0.13 -3.51 4.63 29.85 0.14 -3.37 16 9 C -0.08 -3.35 4.44 30.59 0.14 -3.22 16 10 C -0.01 -0.39 4.04 29.84 0.12 -0.27 16 11 C -0.54 -32.29 9.66 25.60 0.25 -32.05 16 12 H 0.02 1.25 7.99 -2.91 -0.02 1.22 16 13 C 0.00 -0.25 5.47 84.65 0.46 0.21 16 14 N -0.96 -61.81 13.96 21.45 0.30 -61.51 16 15 Si 0.96 43.34 27.47 68.60 1.88 45.23 16 16 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 17 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 18 H -0.23 -9.28 6.54 99.48 0.65 -8.63 16 19 C 0.11 1.44 6.39 86.73 0.55 1.99 16 20 C -0.09 -1.10 3.10 -10.32 -0.03 -1.13 16 21 H 0.14 1.28 7.86 -2.38 -0.02 1.27 16 22 C 0.50 6.15 7.65 71.24 0.54 6.70 16 23 O -0.54 -9.94 16.20 21.96 0.36 -9.58 16 24 O -0.51 -3.83 13.42 -51.43 -0.69 -4.52 16 25 H 0.06 0.76 8.13 -2.38 -0.02 0.74 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 27 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.53 7.59 -2.39 -0.02 1.51 16 30 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.12 2.63 7.90 -2.38 -0.02 2.62 16 32 H 0.04 1.68 8.10 -2.38 -0.02 1.66 16 33 H 0.03 1.61 8.10 -2.39 -0.02 1.59 16 34 H 0.03 1.35 7.20 -2.38 -0.02 1.33 16 35 H 0.03 1.33 7.57 -2.39 -0.02 1.32 16 36 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 37 H 0.12 1.14 7.23 -2.39 -0.02 1.12 16 38 H 0.09 1.02 8.05 -2.39 -0.02 1.00 16 39 H 0.43 -0.08 9.10 -74.06 -0.67 -0.76 16 Total: -1.00 -82.37 325.75 3.50 -78.87 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 0.32 Total: 5.33 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: 4.05 Total: -14.27 kcal Atomic # 7 Polarization: -75.01 SS G_CDS: -2.36 Total: -77.38 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -0.38 Total: -37.78 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.88 Total: 45.23 kcal Total: -82.37 3.50 -78.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594467914.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.496 kcal (2) G-P(sol) polarization free energy of solvation -82.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds