Wall clock time and date at job start Mon Mar 30 2020 01:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 116.99788 * 2 1 4 4 O 1.20825 * 120.00175 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99994 * 180.02562 * 3 2 1 6 6 H 1.08999 * 110.43290 * 327.20167 * 5 3 2 7 7 C 1.54886 * 110.59926 * 204.58175 * 5 3 2 8 8 C 1.54893 * 102.74675 * 203.32321 * 7 5 3 9 9 C 1.54378 * 104.21656 * 37.92761 * 8 7 5 10 10 C 1.53875 * 106.54160 * 336.42205 * 9 8 7 11 11 H 1.09000 * 110.03375 * 240.65350 * 10 9 8 12 12 N 1.46502 * 110.02885 * 119.27663 * 10 9 8 13 13 C 1.34767 * 120.00270 * 91.25819 * 12 10 9 14 14 O 1.21281 * 120.00360 * 359.97438 * 13 12 10 15 15 C 1.50705 * 120.00200 * 180.02562 * 13 12 10 16 16 H 1.09004 * 109.46982 * 299.99646 * 15 13 12 17 17 C 1.52999 * 109.47147 * 59.99635 * 15 13 12 18 18 C 1.50701 * 109.47323 * 179.97438 * 15 13 12 19 19 H 1.08004 * 119.99821 * 354.11990 * 18 15 13 20 20 C 1.37871 * 120.00155 * 174.11506 * 18 15 13 21 21 N 1.31511 * 120.00260 * 158.72397 * 20 18 15 22 22 Si 1.86803 * 119.99910 * 338.72263 * 20 18 15 23 23 H 1.48497 * 109.47585 * 269.99965 * 22 20 18 24 24 H 1.48508 * 109.47152 * 30.00445 * 22 20 18 25 25 H 1.48500 * 109.46985 * 150.00018 * 22 20 18 26 26 H 1.09002 * 109.47503 * 299.99811 * 1 2 3 27 27 H 1.09002 * 109.47387 * 60.00136 * 1 2 3 28 28 H 1.09007 * 109.47158 * 180.02562 * 1 2 3 29 29 H 1.08996 * 110.75827 * 321.63677 * 7 5 3 30 30 H 1.08994 * 110.75597 * 84.82433 * 7 5 3 31 31 H 1.09006 * 110.48486 * 156.61880 * 8 7 5 32 32 H 1.08996 * 110.48724 * 279.12935 * 8 7 5 33 33 H 1.08999 * 110.06466 * 217.15199 * 9 8 7 34 34 H 1.08994 * 110.04950 * 95.68529 * 9 8 7 35 35 H 0.97008 * 119.99606 * 271.25681 * 12 10 9 36 36 H 1.08998 * 109.47092 * 293.79374 * 17 15 13 37 37 H 1.08994 * 109.47057 * 53.79356 * 17 15 13 38 38 H 1.09001 * 109.47081 * 173.79243 * 17 15 13 39 39 H 0.97004 * 119.99770 * 354.93560 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9915 0.4373 0.5524 7 6 4.0417 2.6199 0.6026 8 6 5.4533 2.7901 -0.0118 9 6 5.3055 2.2597 -1.4540 10 6 4.1052 1.2969 -1.4459 11 1 4.4261 0.2976 -1.7400 12 7 3.0682 1.7801 -2.3609 13 6 3.0596 1.3725 -3.6455 14 8 3.9108 0.6060 -4.0441 15 6 1.9932 1.8700 -4.5869 16 1 1.0123 1.5782 -4.2116 17 6 2.0693 3.3951 -4.6835 18 6 2.2082 1.2693 -5.9522 19 1 3.0863 0.6713 -6.1468 20 6 1.2840 1.4830 -6.9527 21 7 1.6339 1.3406 -8.2124 22 14 -0.4652 1.9747 -6.5190 23 1 -1.2957 0.7549 -6.3534 24 1 -0.4622 2.7474 -5.2508 25 1 -1.0282 2.8128 -7.6079 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.3858 3.4344 0.2952 30 1 4.0952 2.5584 1.6895 31 1 5.7418 3.8413 -0.0196 32 1 6.1836 2.1991 0.5408 33 1 6.2091 1.7274 -1.7511 34 1 5.1164 3.0864 -2.1387 35 1 2.3876 2.3935 -2.0422 36 1 1.8056 3.8337 -3.7212 37 1 3.0829 3.6919 -4.9526 38 1 1.3735 3.7460 -5.4457 39 1 2.5586 1.1576 -8.4413 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597717727.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:04 Heat of formation + Delta-G solvation = -138.774247 kcal Electronic energy + Delta-G solvation = -21783.832933 eV Core-core repulsion = 18497.966978 eV Total energy + Delta-G solvation = -3285.865956 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.97621 -39.16481 -37.57522 -36.31468 -33.75624 -33.08691 -31.03344 -30.04595 -27.85572 -27.29375 -24.80370 -23.05269 -22.22895 -20.64834 -19.82738 -19.56246 -17.72672 -17.38651 -16.91327 -16.63918 -16.02198 -15.26709 -14.98472 -14.52382 -14.32222 -13.62720 -13.55530 -13.30106 -13.04561 -12.88453 -12.36335 -12.13144 -11.83327 -11.71872 -11.50691 -11.34137 -11.27921 -11.11002 -10.96975 -10.85090 -10.74651 -10.54952 -10.45165 -10.29277 -9.76322 -8.90882 -8.71405 -8.62395 -8.14696 -6.43768 -4.00013 2.08510 2.62143 3.39746 3.42451 3.54999 3.59107 3.74111 4.24225 4.34717 4.52203 4.69404 4.96731 5.04318 5.13444 5.16455 5.19668 5.26214 5.29838 5.41605 5.48731 5.54336 5.68254 5.79472 5.87545 6.04454 6.12752 6.23880 6.25955 6.32498 6.47615 6.55260 6.90766 6.96847 7.24972 7.64656 7.83143 8.26807 8.50027 9.07262 9.11449 9.66400 10.95957 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019941 B = 0.006428 C = 0.005461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.785556 B = 4354.784845 C = 5126.324619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.355 6.355 3 C 0.476 3.524 4 O -0.508 6.508 5 C -0.099 4.099 6 H 0.116 0.884 7 C -0.111 4.111 8 C -0.121 4.121 9 C -0.134 4.134 10 C 0.154 3.846 11 H 0.101 0.899 12 N -0.749 5.749 13 C 0.529 3.471 14 O -0.533 6.533 15 C 0.004 3.996 16 H 0.043 0.957 17 C -0.134 4.134 18 C -0.593 4.593 19 H 0.076 0.924 20 C 0.035 3.965 21 N -0.900 5.900 22 Si 1.037 2.963 23 H -0.285 1.285 24 H -0.276 1.276 25 H -0.285 1.285 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.398 0.602 36 H 0.026 0.974 37 H 0.047 0.953 38 H 0.056 0.944 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.970 1.833 20.799 20.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.271 6.271 3 C 0.319 3.681 4 O -0.395 6.395 5 C -0.119 4.119 6 H 0.134 0.866 7 C -0.149 4.149 8 C -0.158 4.158 9 C -0.173 4.173 10 C 0.048 3.952 11 H 0.119 0.881 12 N -0.406 5.406 13 C 0.318 3.682 14 O -0.408 6.408 15 C -0.018 4.018 16 H 0.061 0.939 17 C -0.192 4.192 18 C -0.630 4.630 19 H 0.094 0.906 20 C -0.171 4.171 21 N -0.534 5.534 22 Si 0.864 3.136 23 H -0.212 1.212 24 H -0.201 1.201 25 H -0.211 1.211 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.120 0.880 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.234 0.766 36 H 0.045 0.955 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.870 1.850 19.797 19.902 hybrid contribution 0.912 -0.047 0.841 1.241 sum 1.782 1.803 20.637 20.793 Atomic orbital electron populations 1.23307 0.76131 1.03869 1.02664 1.86518 1.23632 1.33305 1.83613 1.23441 0.91658 0.81501 0.71475 1.90651 1.67072 1.36264 1.45555 1.22337 0.87753 1.02170 0.99650 0.86571 1.22553 0.97218 0.95121 0.99990 1.22362 0.96107 1.01647 0.95728 1.22657 0.98080 0.99555 0.97034 1.21374 0.88310 0.99967 0.85590 0.88088 1.46652 1.31787 1.51000 1.11166 1.21522 0.86565 0.79207 0.80913 1.90548 1.39298 1.34865 1.76064 1.19240 0.92970 0.93861 0.95765 0.93909 1.22044 1.01421 0.96818 0.98964 1.21901 1.11666 1.36125 0.93353 0.90637 1.25687 1.04158 0.94309 0.92914 1.70782 1.21077 1.43716 1.17776 0.84143 0.76325 0.77200 0.75892 1.21200 1.20138 1.21060 0.91991 0.91430 0.88049 0.89501 0.90716 0.90919 0.91163 0.90659 0.90483 0.76595 0.95514 0.93410 0.92483 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 101.05 1.07 1.43 16 2 O -0.35 -4.76 10.57 -39.24 -0.41 -5.18 16 3 C 0.48 6.51 5.84 36.01 0.21 6.72 16 4 O -0.51 -7.76 14.48 -18.75 -0.27 -8.03 16 5 C -0.10 -1.13 3.32 -90.11 -0.30 -1.43 16 6 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 7 C -0.11 -1.08 6.18 -24.74 -0.15 -1.23 16 8 C -0.12 -1.10 6.83 -25.01 -0.17 -1.27 16 9 C -0.13 -1.67 6.60 -25.55 -0.17 -1.84 16 10 C 0.15 2.20 3.17 -66.81 -0.21 1.99 16 11 H 0.10 1.59 7.46 -51.93 -0.39 1.21 16 12 N -0.75 -13.29 4.16 -52.72 -0.22 -13.50 16 13 C 0.53 12.07 7.15 -10.99 -0.08 12.00 16 14 O -0.53 -13.99 15.07 5.56 0.08 -13.90 16 15 C 0.00 0.09 2.19 -92.92 -0.20 -0.12 16 16 H 0.04 1.03 6.53 -51.93 -0.34 0.69 16 17 C -0.13 -2.93 8.49 37.16 0.32 -2.62 16 18 C -0.59 -17.39 8.59 -34.44 -0.30 -17.69 16 19 H 0.08 2.50 7.02 -52.48 -0.37 2.13 16 20 C 0.03 1.02 5.23 -17.82 -0.09 0.93 16 21 N -0.90 -28.08 13.70 55.43 0.76 -27.32 16 22 Si 1.04 25.01 26.36 -169.99 -4.48 20.53 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.03 5.94 56.52 0.34 -5.69 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 27 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 28 H 0.10 0.84 8.14 -51.92 -0.42 0.41 16 29 H 0.09 0.97 7.27 -51.93 -0.38 0.60 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 1.08 7.92 -51.93 -0.41 0.67 16 35 H 0.40 6.77 6.35 -40.82 -0.26 6.51 16 36 H 0.03 0.49 7.74 -51.93 -0.40 0.08 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 1.27 5.72 -51.93 -0.30 0.97 16 39 H 0.27 8.50 8.73 -40.82 -0.36 8.15 16 LS Contribution 316.60 15.07 4.77 4.77 Total: -1.00 -34.32 316.60 -5.72 -40.04 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.86 Total: 5.72 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -0.08 Total: -3.11 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.54 Total: -40.83 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.60 Total: -27.11 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -4.48 Total: 20.53 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.32 -5.72 -40.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597717727.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.734 kcal (2) G-P(sol) polarization free energy of solvation -34.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds