Wall clock time and date at job start Mon Mar 30 2020 01:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 116.99788 * 2 1 4 4 O 1.20825 * 120.00175 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99994 * 180.02562 * 3 2 1 6 6 H 1.08999 * 110.43290 * 327.20167 * 5 3 2 7 7 C 1.54886 * 110.59926 * 204.58175 * 5 3 2 8 8 C 1.54893 * 102.74675 * 203.32321 * 7 5 3 9 9 C 1.54378 * 104.21656 * 37.92761 * 8 7 5 10 10 C 1.53875 * 106.54160 * 336.42205 * 9 8 7 11 11 H 1.09000 * 110.03375 * 240.65350 * 10 9 8 12 12 N 1.46502 * 110.02885 * 119.27663 * 10 9 8 13 13 C 1.34767 * 120.00270 * 91.25819 * 12 10 9 14 14 O 1.21281 * 120.00360 * 359.97438 * 13 12 10 15 15 C 1.50705 * 120.00200 * 180.02562 * 13 12 10 16 16 H 1.09004 * 109.46982 * 299.99646 * 15 13 12 17 17 C 1.52999 * 109.47147 * 59.99635 * 15 13 12 18 18 C 1.50701 * 109.47323 * 179.97438 * 15 13 12 19 19 H 1.08004 * 119.99821 * 354.11990 * 18 15 13 20 20 C 1.37871 * 120.00155 * 174.11506 * 18 15 13 21 21 N 1.31511 * 120.00260 * 158.72397 * 20 18 15 22 22 Si 1.86803 * 119.99910 * 338.72263 * 20 18 15 23 23 H 1.48497 * 109.47585 * 269.99965 * 22 20 18 24 24 H 1.48508 * 109.47152 * 30.00445 * 22 20 18 25 25 H 1.48500 * 109.46985 * 150.00018 * 22 20 18 26 26 H 1.09002 * 109.47503 * 299.99811 * 1 2 3 27 27 H 1.09002 * 109.47387 * 60.00136 * 1 2 3 28 28 H 1.09007 * 109.47158 * 180.02562 * 1 2 3 29 29 H 1.08996 * 110.75827 * 321.63677 * 7 5 3 30 30 H 1.08994 * 110.75597 * 84.82433 * 7 5 3 31 31 H 1.09006 * 110.48486 * 156.61880 * 8 7 5 32 32 H 1.08996 * 110.48724 * 279.12935 * 8 7 5 33 33 H 1.08999 * 110.06466 * 217.15199 * 9 8 7 34 34 H 1.08994 * 110.04950 * 95.68529 * 9 8 7 35 35 H 0.97008 * 119.99606 * 271.25681 * 12 10 9 36 36 H 1.08998 * 109.47092 * 293.79374 * 17 15 13 37 37 H 1.08994 * 109.47057 * 53.79356 * 17 15 13 38 38 H 1.09001 * 109.47081 * 173.79243 * 17 15 13 39 39 H 0.97004 * 119.99770 * 354.93560 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9915 0.4373 0.5524 7 6 4.0417 2.6199 0.6026 8 6 5.4533 2.7901 -0.0118 9 6 5.3055 2.2597 -1.4540 10 6 4.1052 1.2969 -1.4459 11 1 4.4261 0.2976 -1.7400 12 7 3.0682 1.7801 -2.3609 13 6 3.0596 1.3725 -3.6455 14 8 3.9108 0.6060 -4.0441 15 6 1.9932 1.8700 -4.5869 16 1 1.0123 1.5782 -4.2116 17 6 2.0693 3.3951 -4.6835 18 6 2.2082 1.2693 -5.9522 19 1 3.0863 0.6713 -6.1468 20 6 1.2840 1.4830 -6.9527 21 7 1.6339 1.3406 -8.2124 22 14 -0.4652 1.9747 -6.5190 23 1 -1.2957 0.7549 -6.3534 24 1 -0.4622 2.7474 -5.2508 25 1 -1.0282 2.8128 -7.6079 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.3858 3.4344 0.2952 30 1 4.0952 2.5584 1.6895 31 1 5.7418 3.8413 -0.0196 32 1 6.1836 2.1991 0.5408 33 1 6.2091 1.7274 -1.7511 34 1 5.1164 3.0864 -2.1387 35 1 2.3876 2.3935 -2.0422 36 1 1.8056 3.8337 -3.7212 37 1 3.0829 3.6919 -4.9526 38 1 1.3735 3.7460 -5.4457 39 1 2.5586 1.1576 -8.4413 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597717727.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:03 Heat of formation + Delta-G solvation = -162.817183 kcal Electronic energy + Delta-G solvation = -21784.875513 eV Core-core repulsion = 18497.966978 eV Total energy + Delta-G solvation = -3286.908536 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.06955 -40.67668 -38.81991 -37.37315 -35.84642 -34.63457 -33.03869 -30.97619 -28.90013 -28.24534 -26.85647 -24.63702 -23.47413 -21.63270 -21.24322 -20.91255 -19.57015 -18.78546 -18.25397 -17.87329 -17.27688 -16.59695 -16.13518 -16.04836 -15.60846 -15.28738 -14.94333 -14.65329 -14.44461 -14.18642 -13.88325 -13.58890 -13.29393 -13.03689 -12.99779 -12.58613 -12.47845 -12.41904 -12.17190 -12.14473 -12.04789 -11.81888 -11.59631 -11.57701 -11.45661 -11.09265 -10.60408 -10.41714 -10.13636 -8.80278 -6.37252 1.03556 1.46416 1.52137 1.69829 1.70533 1.77117 2.26168 2.50157 3.01938 3.33270 3.39505 3.78575 4.05899 4.12658 4.23277 4.27228 4.31050 4.33182 4.37680 4.40500 4.48703 4.62614 4.66721 4.68895 4.75787 4.90939 5.01655 5.07829 5.14618 5.20876 5.32946 5.39165 5.42766 5.53588 5.80975 6.04713 6.55184 6.61106 6.63578 7.33456 7.42269 8.58179 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019941 B = 0.006428 C = 0.005461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.785556 B = 4354.784845 C = 5126.324619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.366 6.366 3 C 0.470 3.530 4 O -0.526 6.526 5 C -0.092 4.092 6 H 0.146 0.854 7 C -0.105 4.105 8 C -0.108 4.108 9 C -0.135 4.135 10 C 0.144 3.856 11 H 0.082 0.918 12 N -0.729 5.729 13 C 0.528 3.472 14 O -0.579 6.579 15 C -0.004 4.004 16 H 0.059 0.941 17 C -0.128 4.128 18 C -0.603 4.603 19 H 0.019 0.981 20 C -0.016 4.016 21 N -0.930 5.930 22 Si 1.083 2.917 23 H -0.272 1.272 24 H -0.235 1.235 25 H -0.281 1.281 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.126 0.874 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.405 0.595 36 H 0.067 0.933 37 H 0.037 0.963 38 H 0.054 0.946 39 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.873 3.029 24.213 24.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C 0.314 3.686 4 O -0.415 6.415 5 C -0.112 4.112 6 H 0.164 0.836 7 C -0.143 4.143 8 C -0.145 4.145 9 C -0.173 4.173 10 C 0.039 3.961 11 H 0.101 0.899 12 N -0.384 5.384 13 C 0.317 3.683 14 O -0.458 6.458 15 C -0.026 4.026 16 H 0.076 0.924 17 C -0.186 4.186 18 C -0.641 4.641 19 H 0.038 0.962 20 C -0.214 4.214 21 N -0.565 5.565 22 Si 0.902 3.098 23 H -0.198 1.198 24 H -0.158 1.158 25 H -0.207 1.207 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.144 0.856 29 H 0.090 0.910 30 H 0.121 0.879 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.242 0.758 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.209 3.060 23.277 23.479 hybrid contribution 1.324 -0.501 -0.208 1.431 sum 1.116 2.558 23.069 23.237 Atomic orbital electron populations 1.23554 0.74893 1.05613 1.02664 1.86519 1.25029 1.33314 1.83340 1.23870 0.92464 0.81304 0.70929 1.90637 1.67690 1.36773 1.46432 1.22443 0.86496 1.04661 0.97556 0.83601 1.22574 0.96844 0.93260 1.01609 1.22339 0.96483 1.02661 0.93023 1.22622 0.96943 0.98384 0.99380 1.21654 0.88323 0.99479 0.86655 0.89948 1.46383 1.32344 1.49895 1.09815 1.21218 0.85767 0.78890 0.82416 1.90535 1.40935 1.37088 1.77240 1.19228 0.94259 0.95467 0.93660 0.92354 1.21921 1.01020 0.94521 1.01150 1.21940 1.09817 1.35820 0.96495 0.96242 1.27339 1.08562 0.93471 0.92018 1.70932 1.19836 1.46386 1.19324 0.83615 0.70583 0.78050 0.77575 1.19819 1.15764 1.20718 0.90673 0.92727 0.85603 0.90963 0.87863 0.89711 0.88675 0.90716 0.92433 0.75772 0.91413 0.94380 0.92690 0.94011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.37 -9.07 10.57 -51.36 -0.54 -9.61 16 3 C 0.47 11.73 5.84 71.24 0.42 12.15 16 4 O -0.53 -14.81 14.48 21.97 0.32 -14.49 16 5 C -0.09 -1.84 3.32 -10.46 -0.03 -1.87 16 6 H 0.15 2.08 8.14 -2.39 -0.02 2.06 16 7 C -0.11 -1.65 6.18 31.89 0.20 -1.45 16 8 C -0.11 -1.57 6.83 31.71 0.22 -1.35 16 9 C -0.13 -3.14 6.60 31.36 0.21 -2.94 16 10 C 0.14 3.96 3.17 45.72 0.14 4.11 16 11 H 0.08 2.60 7.46 -2.39 -0.02 2.59 16 12 N -0.73 -25.20 4.16 -439.10 -1.83 -27.02 16 13 C 0.53 24.40 7.15 87.66 0.63 25.02 16 14 O -0.58 -31.74 15.07 -3.03 -0.05 -31.78 16 15 C 0.00 -0.21 2.19 -12.28 -0.03 -0.23 16 16 H 0.06 2.67 6.53 -2.39 -0.02 2.65 16 17 C -0.13 -5.36 8.49 71.98 0.61 -4.75 16 18 C -0.60 -36.63 8.59 25.60 0.22 -36.41 16 19 H 0.02 1.37 7.02 -2.91 -0.02 1.35 16 20 C -0.02 -0.94 5.23 84.65 0.44 -0.49 16 21 N -0.93 -60.16 13.70 21.44 0.29 -59.87 16 22 Si 1.08 49.34 26.36 68.60 1.81 51.15 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.23 -9.07 5.94 99.48 0.59 -8.48 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 26 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16 27 H 0.05 1.20 8.13 -2.39 -0.02 1.18 16 28 H 0.13 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.07 1.38 7.27 -2.39 -0.02 1.37 16 30 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 1.57 7.92 -2.39 -0.02 1.55 16 35 H 0.41 12.98 6.35 -92.70 -0.59 12.39 16 36 H 0.07 2.27 7.74 -2.39 -0.02 2.25 16 37 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.05 2.31 5.72 -2.39 -0.01 2.30 16 39 H 0.25 16.76 8.73 -92.71 -0.81 15.95 16 Total: -1.00 -79.22 316.60 4.53 -74.68 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.31 Total: 23.47 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 4.22 Total: -6.52 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -1.53 Total: -86.89 kcal Atomic # 8 Polarization: -55.62 SS G_CDS: -0.27 Total: -55.89 kcal Atomic # 14 Polarization: 49.34 SS G_CDS: 1.81 Total: 51.15 kcal Total: -79.22 4.53 -74.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597717727.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.134 kcal (2) G-P(sol) polarization free energy of solvation -79.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds