Wall clock time and date at job start Mon Mar 30 2020 01:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50707 * 109.46966 * 64.99950 * 4 2 1 6 6 H 1.07991 * 119.99895 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99853 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99798 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00090 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47175 * 90.00353 * 9 7 5 11 11 H 1.48507 * 109.47269 * 210.00434 * 9 7 5 12 12 H 1.48501 * 109.47497 * 330.00323 * 9 7 5 13 13 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 14 14 N 1.46904 * 109.47486 * 295.00613 * 13 2 1 15 15 C 1.46894 * 111.00353 * 179.97438 * 14 13 2 16 16 C 1.50702 * 109.47376 * 179.97438 * 15 14 13 17 17 C 1.38201 * 119.99894 * 259.72684 * 16 15 14 18 18 C 1.38429 * 119.99948 * 179.76685 * 17 16 15 19 19 F 1.35108 * 120.00409 * 180.26969 * 18 17 16 20 20 C 1.38474 * 119.99928 * 0.52551 * 18 17 16 21 21 C 1.38161 * 119.99815 * 359.72849 * 20 18 17 22 22 C 1.38426 * 119.99887 * 79.99923 * 16 15 14 23 23 F 1.35104 * 120.00024 * 359.97438 * 22 16 15 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 28 28 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 29 29 H 0.96997 * 120.00076 * 179.97438 * 8 7 5 30 30 H 1.09006 * 109.47194 * 55.00274 * 13 2 1 31 31 H 1.08997 * 109.47756 * 174.99755 * 13 2 1 32 32 H 1.00906 * 110.99364 * 303.95285 * 14 13 2 33 33 H 1.09002 * 109.47086 * 300.00088 * 15 14 13 34 34 H 1.09005 * 109.47157 * 59.99929 * 15 14 13 35 35 H 1.08000 * 120.00455 * 0.02562 * 17 16 15 36 36 H 1.07994 * 120.00165 * 179.69676 * 20 18 17 37 37 H 1.07992 * 120.00068 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.6414 0.0571 -2.4765 6 1 1.0807 0.9745 -2.3757 7 6 1.9925 -0.4023 -3.7283 8 7 1.6450 0.2771 -4.7994 9 14 2.9629 -1.9888 -3.9027 10 1 2.0237 -3.1333 -4.0189 11 1 3.8111 -1.9191 -5.1197 12 1 3.8253 -2.1755 -2.7083 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0375 2.4457 15 6 2.1247 -0.6270 3.6673 16 6 1.7087 0.1788 4.8709 17 6 2.6184 1.0137 5.4916 18 6 2.2349 1.7575 6.5943 19 9 3.1226 2.5779 7.1978 20 6 0.9428 1.6567 7.0821 21 6 0.0349 0.8180 6.4648 22 6 0.4169 0.0783 5.3583 23 9 -0.4710 -0.7418 4.7545 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 3.1263 -0.7994 -1.2055 28 1 1.6054 -1.7198 -1.2951 29 1 1.8923 -0.0458 -5.6799 30 1 1.6054 -1.7198 1.2952 31 1 3.1263 -0.7995 1.2057 32 1 1.9881 0.9874 2.3967 33 1 1.6904 -1.6248 3.7297 34 1 3.2116 -0.7049 3.6406 35 1 3.6273 1.0891 5.1138 36 1 0.6450 2.2333 7.9453 37 1 -0.9726 0.7390 6.8454 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602539748.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:18 Heat of formation + Delta-G solvation = -82.478783 kcal Electronic energy + Delta-G solvation = -19701.987667 eV Core-core repulsion = 16307.475351 eV Total energy + Delta-G solvation = -3394.512317 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.20788 -48.99805 -39.30998 -36.98641 -34.43715 -32.35687 -31.24425 -30.21263 -27.59700 -26.34602 -24.39136 -23.22955 -22.05730 -21.70386 -19.19671 -17.87360 -17.46921 -17.42278 -16.74335 -16.12615 -15.53734 -15.33499 -14.86970 -14.70046 -14.48230 -14.26462 -13.96202 -13.64285 -13.42628 -12.90119 -12.79100 -12.39820 -12.18144 -11.98912 -11.69103 -11.57415 -11.24272 -10.95597 -10.73699 -10.45827 -9.79953 -9.73354 -9.61107 -9.35647 -9.05575 -8.78290 -8.50841 -8.28897 -6.01046 -3.97965 0.65026 0.68752 3.02302 3.32040 3.39349 3.42463 3.80906 3.95363 4.16672 4.36666 4.47495 4.47875 4.64968 4.83789 5.16193 5.27626 5.32606 5.49795 5.57285 5.62927 5.66102 5.70665 5.77467 5.90209 6.01746 6.28608 6.40461 6.48072 6.59350 6.83914 7.03142 7.12135 7.19657 7.30814 7.44352 7.52401 7.83589 8.58509 9.04877 9.61768 11.12450 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.032822 B = 0.003337 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.884015 B = 8388.284085 C = 8641.754454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 H 0.060 0.940 4 C -0.009 4.009 5 C -0.513 4.513 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.062 3.938 14 N -0.680 5.680 15 C 0.096 3.904 16 C -0.087 4.087 17 C -0.120 4.120 18 C 0.085 3.915 19 F -0.137 7.137 20 C -0.126 4.126 21 C -0.130 4.130 22 C 0.116 3.884 23 F -0.124 7.124 24 H 0.039 0.961 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.012 0.988 28 H 0.012 0.988 29 H 0.262 0.738 30 H 0.069 0.931 31 H 0.026 0.974 32 H 0.341 0.659 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.241 0.169 25.247 25.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.092 4.092 3 H 0.078 0.922 4 C -0.047 4.047 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.066 4.066 14 N -0.311 5.311 15 C -0.033 4.033 16 C -0.088 4.088 17 C -0.140 4.140 18 C 0.066 3.934 19 F -0.116 7.116 20 C -0.145 4.145 21 C -0.148 4.148 22 C 0.096 3.904 23 F -0.102 7.102 24 H 0.058 0.942 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.030 0.970 28 H 0.030 0.970 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.159 0.841 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.368 -0.133 25.065 25.068 hybrid contribution 1.477 -0.602 -0.286 1.620 sum 1.109 -0.735 24.779 24.815 Atomic orbital electron populations 1.21601 0.95180 1.00707 1.00715 1.21009 0.96445 0.99023 0.92761 0.92170 1.19612 0.95687 0.95923 0.93460 1.21134 1.35270 1.09575 0.89083 0.90819 1.25033 0.95685 0.96947 0.95957 1.69914 1.47227 1.39317 0.98001 0.86799 0.80629 0.84379 0.77558 1.20353 1.21508 1.19162 1.22216 0.97216 0.97864 0.89341 1.60533 1.63960 1.05873 1.00733 1.20826 0.98018 0.97347 0.87067 1.19786 0.92188 0.98893 0.97958 1.20963 1.01038 0.96615 0.95342 1.17616 0.87812 0.93476 0.94531 1.91520 1.67509 1.70142 1.82410 1.20971 0.91644 1.00364 1.01553 1.21019 1.01147 0.97132 0.95543 1.17501 0.87131 0.92598 0.93132 1.91558 1.66824 1.69508 1.82304 0.94173 0.92228 0.93689 0.96950 0.97009 0.92832 0.91302 0.95566 0.84124 0.89548 0.93777 0.83898 0.83860 0.83676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 2 C -0.07 -1.43 2.48 -90.63 -0.22 -1.66 16 3 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 4 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 5 C -0.51 -14.51 8.96 -34.43 -0.31 -14.82 16 6 H 0.07 2.24 7.30 -52.49 -0.38 1.86 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.06 13.96 55.43 0.77 -27.29 16 9 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 13 C 0.06 0.98 5.07 -3.82 -0.02 0.96 16 14 N -0.68 -9.23 5.94 -115.05 -0.68 -9.92 16 15 C 0.10 1.08 5.54 -4.98 -0.03 1.05 16 16 C -0.09 -0.90 5.40 -104.57 -0.56 -1.47 16 17 C -0.12 -1.11 9.65 -39.52 -0.38 -1.49 16 18 C 0.09 0.78 7.30 -39.42 -0.29 0.49 16 19 F -0.14 -1.36 17.27 2.25 0.04 -1.32 16 20 C -0.13 -0.99 10.02 -39.52 -0.40 -1.39 16 21 C -0.13 -1.08 10.02 -39.52 -0.40 -1.48 16 22 C 0.12 1.24 7.24 -39.43 -0.29 0.96 16 23 F -0.12 -1.55 16.66 2.25 0.04 -1.51 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 26 H 0.04 0.79 7.75 -51.93 -0.40 0.39 16 27 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 28 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.34 4.43 8.72 -39.29 -0.34 4.08 16 33 H 0.09 1.00 7.95 -51.93 -0.41 0.58 16 34 H 0.04 0.44 8.00 -51.93 -0.42 0.03 16 35 H 0.14 1.13 8.03 -52.49 -0.42 0.70 16 36 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 37 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 318.08 15.07 4.79 4.79 Total: -1.00 -30.70 318.08 -7.68 -38.38 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -5.21 Total: -0.87 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -2.76 Total: -19.44 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.09 Total: -37.20 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.08 Total: -2.83 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.70 -7.68 -38.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602539748.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.103 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds