Wall clock time and date at job start Mon Mar 30 2020 01:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50707 * 109.46966 * 64.99950 * 4 2 1 6 6 H 1.07991 * 119.99895 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99853 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99798 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00090 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47175 * 90.00353 * 9 7 5 11 11 H 1.48507 * 109.47269 * 210.00434 * 9 7 5 12 12 H 1.48501 * 109.47497 * 330.00323 * 9 7 5 13 13 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 14 14 N 1.46904 * 109.47486 * 295.00613 * 13 2 1 15 15 C 1.46894 * 111.00353 * 179.97438 * 14 13 2 16 16 C 1.50702 * 109.47376 * 179.97438 * 15 14 13 17 17 C 1.38201 * 119.99894 * 259.72684 * 16 15 14 18 18 C 1.38429 * 119.99948 * 179.76685 * 17 16 15 19 19 F 1.35108 * 120.00409 * 180.26969 * 18 17 16 20 20 C 1.38474 * 119.99928 * 0.52551 * 18 17 16 21 21 C 1.38161 * 119.99815 * 359.72849 * 20 18 17 22 22 C 1.38426 * 119.99887 * 79.99923 * 16 15 14 23 23 F 1.35104 * 120.00024 * 359.97438 * 22 16 15 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 28 28 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 29 29 H 0.96997 * 120.00076 * 179.97438 * 8 7 5 30 30 H 1.09006 * 109.47194 * 55.00274 * 13 2 1 31 31 H 1.08997 * 109.47756 * 174.99755 * 13 2 1 32 32 H 1.00906 * 110.99364 * 303.95285 * 14 13 2 33 33 H 1.09002 * 109.47086 * 300.00088 * 15 14 13 34 34 H 1.09005 * 109.47157 * 59.99929 * 15 14 13 35 35 H 1.08000 * 120.00455 * 0.02562 * 17 16 15 36 36 H 1.07994 * 120.00165 * 179.69676 * 20 18 17 37 37 H 1.07992 * 120.00068 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.6414 0.0571 -2.4765 6 1 1.0807 0.9745 -2.3757 7 6 1.9925 -0.4023 -3.7283 8 7 1.6450 0.2771 -4.7994 9 14 2.9629 -1.9888 -3.9027 10 1 2.0237 -3.1333 -4.0189 11 1 3.8111 -1.9191 -5.1197 12 1 3.8253 -2.1755 -2.7083 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0375 2.4457 15 6 2.1247 -0.6270 3.6673 16 6 1.7087 0.1788 4.8709 17 6 2.6184 1.0137 5.4916 18 6 2.2349 1.7575 6.5943 19 9 3.1226 2.5779 7.1978 20 6 0.9428 1.6567 7.0821 21 6 0.0349 0.8180 6.4648 22 6 0.4169 0.0783 5.3583 23 9 -0.4710 -0.7418 4.7545 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 3.1263 -0.7994 -1.2055 28 1 1.6054 -1.7198 -1.2951 29 1 1.8923 -0.0458 -5.6799 30 1 1.6054 -1.7198 1.2952 31 1 3.1263 -0.7995 1.2057 32 1 1.9881 0.9874 2.3967 33 1 1.6904 -1.6248 3.7297 34 1 3.2116 -0.7049 3.6406 35 1 3.6273 1.0891 5.1138 36 1 0.6450 2.2333 7.9453 37 1 -0.9726 0.7390 6.8454 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602539748.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:17 Heat of formation + Delta-G solvation = -100.634543 kcal Electronic energy + Delta-G solvation = -19702.774960 eV Core-core repulsion = 16307.475351 eV Total energy + Delta-G solvation = -3395.299610 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.92908 -49.84167 -40.04478 -38.29651 -35.84391 -34.21968 -32.31491 -30.98330 -29.41683 -27.51447 -25.73901 -23.98643 -23.65365 -22.55389 -20.79467 -18.95530 -18.60739 -18.22128 -18.14765 -16.92314 -16.50368 -16.40410 -16.29710 -15.77631 -15.57022 -15.36198 -15.13803 -14.84819 -14.58890 -14.26289 -13.99226 -13.60513 -13.49919 -13.07798 -13.03149 -12.84758 -12.74860 -12.46428 -12.18776 -11.97965 -11.70881 -11.47023 -11.20141 -11.05284 -10.73287 -10.19301 -9.53171 -9.34506 -8.25480 -6.27920 -0.06926 0.01794 1.36891 1.38149 1.49902 2.32004 2.38352 3.07788 3.09825 3.24722 3.35365 3.59550 3.66440 4.01073 4.12155 4.14459 4.26076 4.43742 4.49030 4.57025 4.77058 4.85851 4.89662 4.94841 4.96859 5.00629 5.06556 5.09999 5.16180 5.40165 5.41015 5.54697 5.70132 5.73361 5.78545 6.02186 6.34984 6.43145 6.79956 7.35585 8.91432 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.032822 B = 0.003337 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.884015 B = 8388.284085 C = 8641.754454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.070 4.070 3 H 0.051 0.949 4 C -0.006 4.006 5 C -0.519 4.519 6 H 0.033 0.967 7 C 0.000 4.000 8 N -0.955 5.955 9 Si 0.949 3.051 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.245 1.245 13 C 0.076 3.924 14 N -0.686 5.686 15 C 0.099 3.901 16 C -0.096 4.096 17 C -0.120 4.120 18 C 0.075 3.925 19 F -0.142 7.142 20 C -0.117 4.117 21 C -0.125 4.125 22 C 0.095 3.905 23 F -0.139 7.139 24 H 0.042 0.958 25 H 0.026 0.974 26 H 0.062 0.938 27 H 0.018 0.982 28 H 0.017 0.983 29 H 0.264 0.736 30 H 0.071 0.929 31 H 0.035 0.965 32 H 0.344 0.656 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.155 0.845 36 H 0.170 0.830 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.113 -0.900 27.557 27.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.089 4.089 3 H 0.069 0.931 4 C -0.044 4.044 5 C -0.557 4.557 6 H 0.052 0.948 7 C -0.196 4.196 8 N -0.596 5.596 9 Si 0.773 3.227 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.169 1.169 13 C -0.053 4.053 14 N -0.318 5.318 15 C -0.029 4.029 16 C -0.097 4.097 17 C -0.139 4.139 18 C 0.056 3.944 19 F -0.121 7.121 20 C -0.136 4.136 21 C -0.143 4.143 22 C 0.075 3.925 23 F -0.118 7.118 24 H 0.062 0.938 25 H 0.045 0.955 26 H 0.081 0.919 27 H 0.036 0.964 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.163 0.837 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.172 0.828 36 H 0.188 0.812 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.503 -1.197 27.407 27.438 hybrid contribution 1.143 -0.146 -0.944 1.489 sum 1.646 -1.343 26.464 26.549 Atomic orbital electron populations 1.21493 0.95279 1.00614 0.99901 1.20885 0.96296 0.98559 0.93140 0.93086 1.19565 0.95982 0.95719 0.93164 1.21466 1.34285 1.08666 0.91307 0.94838 1.26023 0.97058 1.01029 0.95509 1.70076 1.49155 1.41678 0.98723 0.85671 0.79318 0.79423 0.78285 1.19391 1.21231 1.16869 1.21917 0.97482 0.97434 0.88436 1.60435 1.64474 1.06031 1.00810 1.20804 0.98856 0.97037 0.86210 1.19701 0.92447 0.99559 0.98026 1.21063 1.01419 0.96152 0.95282 1.17805 0.88338 0.93562 0.94714 1.91512 1.67783 1.70304 1.82481 1.21270 0.90814 0.99702 1.01800 1.21264 1.02270 0.96218 0.94572 1.17830 0.87195 0.93306 0.94188 1.91516 1.67347 1.70157 1.82770 0.93846 0.95493 0.91925 0.96357 0.96499 0.92693 0.91068 0.94704 0.83749 0.89955 0.92239 0.82758 0.81236 0.81504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.46 8.89 71.98 0.64 -3.82 16 2 C -0.07 -2.68 2.48 -10.80 -0.03 -2.71 16 3 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 4 C -0.01 -0.30 3.52 29.85 0.10 -0.19 16 5 C -0.52 -30.02 8.96 25.60 0.23 -29.79 16 6 H 0.03 2.14 7.30 -2.92 -0.02 2.12 16 7 C 0.00 -0.01 5.47 84.66 0.46 0.45 16 8 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 9 Si 0.95 44.64 27.47 68.60 1.88 46.53 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 12 H -0.25 -10.59 6.54 99.48 0.65 -9.94 16 13 C 0.08 2.26 5.07 86.30 0.44 2.70 16 14 N -0.69 -17.40 5.94 -517.92 -3.08 -20.48 16 15 C 0.10 2.04 5.54 85.56 0.47 2.51 16 16 C -0.10 -1.82 5.40 -19.83 -0.11 -1.93 16 17 C -0.12 -1.98 9.65 22.31 0.22 -1.77 16 18 C 0.08 1.22 7.30 22.37 0.16 1.38 16 19 F -0.14 -2.53 17.27 44.97 0.78 -1.75 16 20 C -0.12 -1.51 10.02 22.31 0.22 -1.29 16 21 C -0.12 -1.79 10.02 22.31 0.22 -1.56 16 22 C 0.09 1.87 7.24 22.37 0.16 2.03 16 23 F -0.14 -3.35 16.66 44.97 0.75 -2.60 16 24 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.03 1.18 6.95 -2.39 -0.02 1.16 16 26 H 0.06 2.17 7.75 -2.38 -0.02 2.15 16 27 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 28 H 0.02 0.76 7.57 -2.39 -0.02 0.75 16 29 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 30 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.34 8.37 8.72 -89.69 -0.78 7.59 16 33 H 0.08 1.76 7.95 -2.39 -0.02 1.74 16 34 H 0.06 1.04 8.00 -2.38 -0.02 1.02 16 35 H 0.15 2.10 8.03 -2.91 -0.02 2.08 16 36 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 37 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -67.04 318.08 4.07 -62.97 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 0.23 Total: 9.81 kcal Atomic # 6 Polarization: -37.20 SS G_CDS: 3.20 Total: -34.00 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -2.78 Total: -80.96 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 1.53 Total: -4.36 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.53 kcal Total: -67.04 4.07 -62.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602539748.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.661 kcal (2) G-P(sol) polarization free energy of solvation -67.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds