Wall clock time and date at job start Mon Mar 30 2020 01:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47247 * 2 1 4 4 C 1.53003 * 109.47132 * 240.00041 * 2 1 3 5 5 C 1.50699 * 109.47032 * 65.00011 * 4 2 1 6 6 H 1.08003 * 119.99707 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00300 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99813 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00324 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47077 * 59.99915 * 9 7 5 11 11 H 1.48501 * 109.46906 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46851 * 300.00117 * 9 7 5 13 13 C 1.53002 * 109.47213 * 120.00389 * 2 1 3 14 14 N 1.46904 * 109.46933 * 295.00166 * 13 2 1 15 15 C 1.46904 * 110.99754 * 180.02562 * 14 13 2 16 16 C 1.50699 * 109.46697 * 179.97438 * 15 14 13 17 17 C 1.38256 * 120.00149 * 105.00166 * 16 15 14 18 18 C 1.38215 * 120.06983 * 179.97438 * 17 16 15 19 19 C 1.38256 * 120.07338 * 359.97438 * 18 17 16 20 20 C 1.38370 * 119.99591 * 0.02562 * 19 18 17 21 21 F 1.35105 * 120.02908 * 180.02562 * 20 19 18 22 22 C 1.38374 * 120.00034 * 284.97148 * 16 15 14 23 23 F 1.35106 * 120.03513 * 0.02562 * 22 16 15 24 24 H 1.09010 * 109.46827 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47281 * 299.99252 * 1 2 3 26 26 H 1.08995 * 109.47269 * 60.00277 * 1 2 3 27 27 H 1.08999 * 109.47179 * 184.99774 * 4 2 1 28 28 H 1.09000 * 109.47246 * 304.99812 * 4 2 1 29 29 H 0.97005 * 120.00096 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.47275 * 175.00188 * 13 2 1 31 31 H 1.09000 * 109.47381 * 55.00265 * 13 2 1 32 32 H 1.00899 * 110.99958 * 56.04631 * 14 13 2 33 33 H 1.08997 * 109.46781 * 59.99887 * 15 14 13 34 34 H 1.08993 * 109.47012 * 299.99778 * 15 14 13 35 35 H 1.07997 * 119.95889 * 0.24792 * 17 16 15 36 36 H 1.08000 * 119.96228 * 180.02562 * 18 17 16 37 37 H 1.08000 * 119.99981 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0799 0.9742 -2.3756 7 6 1.9932 -0.4016 -3.7283 8 7 2.6772 -1.5181 -3.8511 9 14 1.4996 0.5636 -5.2496 10 1 2.0918 1.9240 -5.1865 11 1 1.9956 -0.1359 -6.4620 12 1 0.0197 0.6702 -5.3095 13 6 2.0400 -0.7213 1.2492 14 7 1.6513 0.0373 2.4457 15 6 2.1258 -0.6268 3.6672 16 6 1.7097 0.1790 4.8708 17 6 0.6671 -0.2565 5.6675 18 6 0.2847 0.4811 6.7720 19 6 0.9443 1.6557 7.0829 20 6 1.9882 2.0943 6.2875 21 9 2.6335 3.2418 6.5910 22 6 2.3716 1.3544 5.1790 23 9 3.3907 1.7807 4.4010 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.1263 -0.7994 -1.2056 28 1 1.6054 -1.7198 -1.2952 29 1 2.9251 -1.8406 -4.7318 30 1 3.1263 -0.7995 1.2056 31 1 1.6055 -1.7199 1.2951 32 1 0.6528 0.1791 2.4753 33 1 3.2127 -0.7039 3.6399 34 1 1.6921 -1.6247 3.7300 35 1 0.1539 -1.1764 5.4289 36 1 -0.5297 0.1390 7.3934 37 1 0.6448 2.2309 7.9465 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602730780.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:22 Heat of formation + Delta-G solvation = -84.334842 kcal Electronic energy + Delta-G solvation = -19762.071720 eV Core-core repulsion = 16367.478918 eV Total energy + Delta-G solvation = -3394.592801 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.52301 -48.57302 -39.35013 -36.94638 -34.29535 -32.31787 -30.80617 -30.53009 -27.08217 -26.29378 -24.53386 -23.02859 -22.34565 -21.72080 -19.03298 -17.99083 -17.45506 -17.12247 -16.44532 -16.35146 -15.43911 -15.08837 -15.05952 -14.68214 -14.42484 -14.20683 -14.09119 -13.50975 -13.26062 -12.70770 -12.49533 -12.36291 -12.11862 -11.94074 -11.72396 -11.41631 -11.24098 -10.87085 -10.73694 -10.33739 -10.22549 -9.71741 -9.29755 -9.09958 -8.96707 -8.91320 -8.31486 -8.21861 -5.96298 -3.97471 0.68505 0.72831 3.08424 3.35847 3.40062 3.42827 3.58614 4.20097 4.22542 4.38384 4.48605 4.58500 4.77411 4.81009 5.18939 5.37621 5.39491 5.55208 5.63313 5.71033 5.75179 5.76404 5.86834 5.99705 6.05145 6.23086 6.44698 6.51769 6.55104 6.90506 7.10412 7.16936 7.29066 7.57545 7.70837 7.86659 8.03777 8.47619 9.08587 9.65872 11.15220 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.034410 B = 0.003257 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.528413 B = 8594.753885 C = 8835.394469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.066 0.934 4 C 0.029 3.971 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.065 3.935 14 N -0.684 5.684 15 C 0.096 3.904 16 C -0.090 4.090 17 C -0.097 4.097 18 C -0.105 4.105 19 C -0.129 4.129 20 C 0.060 3.940 21 F -0.131 7.131 22 C 0.095 3.905 23 F -0.116 7.116 24 H 0.041 0.959 25 H 0.031 0.969 26 H 0.063 0.937 27 H 0.015 0.985 28 H 0.014 0.986 29 H 0.260 0.740 30 H 0.069 0.931 31 H 0.026 0.974 32 H 0.340 0.660 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.739 2.050 23.190 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.104 4.104 3 H 0.084 0.916 4 C -0.009 4.009 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.063 4.063 14 N -0.316 5.316 15 C -0.033 4.033 16 C -0.091 4.091 17 C -0.115 4.115 18 C -0.123 4.123 19 C -0.148 4.148 20 C 0.040 3.960 21 F -0.109 7.109 22 C 0.075 3.925 23 F -0.094 7.094 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.082 0.918 27 H 0.034 0.966 28 H 0.033 0.967 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.159 0.841 33 H 0.104 0.896 34 H 0.064 0.936 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.039 2.408 22.981 23.457 hybrid contribution -0.518 0.038 -0.926 1.061 sum -4.557 2.446 22.055 22.653 Atomic orbital electron populations 1.21743 0.96668 1.00413 1.00301 1.21232 0.94876 1.00207 0.94042 0.91556 1.19103 0.96170 0.95326 0.90294 1.21203 1.34704 1.08293 0.90997 0.92611 1.25017 0.95320 0.95093 0.99090 1.69956 1.38993 1.21282 1.23486 0.86686 0.78841 0.80181 0.82460 1.20252 1.21380 1.20308 1.22171 1.00577 0.94379 0.89165 1.60601 1.19775 1.50489 1.00765 1.20833 1.01566 0.93943 0.86960 1.19948 0.96455 0.94452 0.98254 1.21093 0.95657 1.00433 0.94349 1.21027 0.99872 0.94015 0.97370 1.21072 0.95263 0.98156 1.00335 1.17748 0.96347 0.85225 0.96687 1.91530 1.80287 1.46450 1.92641 1.17521 0.89730 0.94868 0.90430 1.91579 1.55722 1.89164 1.72943 0.93999 0.95010 0.91818 0.96623 0.96742 0.93042 0.91246 0.95584 0.84103 0.89633 0.93609 0.84418 0.84331 0.83918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.77 37.16 0.33 -2.15 16 2 C -0.08 -1.74 2.55 -90.62 -0.23 -1.97 16 3 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -14.47 8.41 -34.44 -0.29 -14.76 16 6 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 9 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.07 1.12 5.14 -3.82 -0.02 1.10 16 14 N -0.68 -10.07 6.49 -115.05 -0.75 -10.81 16 15 C 0.10 1.16 5.50 -4.97 -0.03 1.13 16 16 C -0.09 -0.99 5.40 -104.57 -0.56 -1.55 16 17 C -0.10 -0.79 9.67 -39.58 -0.38 -1.17 16 18 C -0.10 -0.73 10.04 -39.58 -0.40 -1.12 16 19 C -0.13 -1.06 10.02 -39.53 -0.40 -1.45 16 20 C 0.06 0.68 7.31 -39.37 -0.29 0.39 16 21 F -0.13 -1.63 17.18 2.25 0.04 -1.59 16 22 C 0.10 1.21 7.25 -39.37 -0.29 0.93 16 23 F -0.12 -1.77 16.67 2.25 0.04 -1.73 16 24 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 25 H 0.03 0.49 6.68 -51.93 -0.35 0.15 16 26 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.34 4.69 6.98 -39.29 -0.27 4.42 16 33 H 0.09 1.09 8.08 -51.93 -0.42 0.67 16 34 H 0.05 0.48 7.95 -51.93 -0.41 0.07 16 35 H 0.14 0.84 8.00 -52.49 -0.42 0.42 16 36 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 37 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 319.41 15.07 4.81 4.81 Total: -1.00 -30.94 319.41 -8.04 -38.98 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -5.12 Total: -1.58 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -2.78 Total: -18.52 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.01 Total: -37.19 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.08 Total: -3.32 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.94 -8.04 -38.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602730780.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.359 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds