Wall clock time and date at job start Mon Mar 30 2020 01:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47247 * 2 1 4 4 C 1.53003 * 109.47132 * 240.00041 * 2 1 3 5 5 C 1.50699 * 109.47032 * 65.00011 * 4 2 1 6 6 H 1.08003 * 119.99707 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00300 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99813 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00324 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47077 * 59.99915 * 9 7 5 11 11 H 1.48501 * 109.46906 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46851 * 300.00117 * 9 7 5 13 13 C 1.53002 * 109.47213 * 120.00389 * 2 1 3 14 14 N 1.46904 * 109.46933 * 295.00166 * 13 2 1 15 15 C 1.46904 * 110.99754 * 180.02562 * 14 13 2 16 16 C 1.50699 * 109.46697 * 179.97438 * 15 14 13 17 17 C 1.38256 * 120.00149 * 105.00166 * 16 15 14 18 18 C 1.38215 * 120.06983 * 179.97438 * 17 16 15 19 19 C 1.38256 * 120.07338 * 359.97438 * 18 17 16 20 20 C 1.38370 * 119.99591 * 0.02562 * 19 18 17 21 21 F 1.35105 * 120.02908 * 180.02562 * 20 19 18 22 22 C 1.38374 * 120.00034 * 284.97148 * 16 15 14 23 23 F 1.35106 * 120.03513 * 0.02562 * 22 16 15 24 24 H 1.09010 * 109.46827 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47281 * 299.99252 * 1 2 3 26 26 H 1.08995 * 109.47269 * 60.00277 * 1 2 3 27 27 H 1.08999 * 109.47179 * 184.99774 * 4 2 1 28 28 H 1.09000 * 109.47246 * 304.99812 * 4 2 1 29 29 H 0.97005 * 120.00096 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.47275 * 175.00188 * 13 2 1 31 31 H 1.09000 * 109.47381 * 55.00265 * 13 2 1 32 32 H 1.00899 * 110.99958 * 56.04631 * 14 13 2 33 33 H 1.08997 * 109.46781 * 59.99887 * 15 14 13 34 34 H 1.08993 * 109.47012 * 299.99778 * 15 14 13 35 35 H 1.07997 * 119.95889 * 0.24792 * 17 16 15 36 36 H 1.08000 * 119.96228 * 180.02562 * 18 17 16 37 37 H 1.08000 * 119.99981 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0799 0.9742 -2.3756 7 6 1.9932 -0.4016 -3.7283 8 7 2.6772 -1.5181 -3.8511 9 14 1.4996 0.5636 -5.2496 10 1 2.0918 1.9240 -5.1865 11 1 1.9956 -0.1359 -6.4620 12 1 0.0197 0.6702 -5.3095 13 6 2.0400 -0.7213 1.2492 14 7 1.6513 0.0373 2.4457 15 6 2.1258 -0.6268 3.6672 16 6 1.7097 0.1790 4.8708 17 6 0.6671 -0.2565 5.6675 18 6 0.2847 0.4811 6.7720 19 6 0.9443 1.6557 7.0829 20 6 1.9882 2.0943 6.2875 21 9 2.6335 3.2418 6.5910 22 6 2.3716 1.3544 5.1790 23 9 3.3907 1.7807 4.4010 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.1263 -0.7994 -1.2056 28 1 1.6054 -1.7198 -1.2952 29 1 2.9251 -1.8406 -4.7318 30 1 3.1263 -0.7995 1.2056 31 1 1.6055 -1.7199 1.2951 32 1 0.6528 0.1791 2.4753 33 1 3.2127 -0.7039 3.6399 34 1 1.6921 -1.6247 3.7300 35 1 0.1539 -1.1764 5.4289 36 1 -0.5297 0.1390 7.3934 37 1 0.6448 2.2309 7.9465 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602730780.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:21 Heat of formation + Delta-G solvation = -102.793923 kcal Electronic energy + Delta-G solvation = -19762.872165 eV Core-core repulsion = 16367.478918 eV Total energy + Delta-G solvation = -3395.393247 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.43960 -49.52611 -40.10645 -38.34275 -35.81538 -34.14295 -31.94469 -31.24680 -28.93532 -27.54836 -25.99725 -24.02226 -23.76420 -22.64105 -20.69814 -18.86961 -18.56142 -18.26517 -17.90682 -17.33347 -16.69321 -16.59594 -16.02133 -15.74442 -15.62130 -15.45160 -15.24626 -14.81706 -14.36312 -14.16174 -13.95487 -13.50272 -13.25939 -13.18810 -12.97580 -12.76980 -12.72015 -12.55424 -12.24382 -12.11320 -11.92306 -11.50233 -11.07941 -10.97111 -10.52928 -9.94770 -9.70231 -9.37517 -8.17496 -6.26641 -0.02764 -0.00676 1.39929 1.42904 1.50499 2.38349 2.42632 2.83583 3.15836 3.26401 3.40472 3.60003 3.80780 4.02754 4.17288 4.22191 4.23581 4.39472 4.46051 4.58666 4.76563 4.83547 4.87619 4.92875 5.03583 5.04493 5.20084 5.23887 5.30720 5.37496 5.49046 5.54887 5.78343 5.81136 5.89132 6.01735 6.31020 6.47148 6.88998 7.41522 8.94384 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.034410 B = 0.003257 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.528413 B = 8594.753885 C = 8835.394469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.077 4.077 3 H 0.049 0.951 4 C 0.034 3.966 5 C -0.531 4.531 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.265 1.265 13 C 0.080 3.920 14 N -0.691 5.691 15 C 0.098 3.902 16 C -0.100 4.100 17 C -0.087 4.087 18 C -0.088 4.088 19 C -0.119 4.119 20 C 0.037 3.963 21 F -0.146 7.146 22 C 0.059 3.941 23 F -0.144 7.144 24 H 0.046 0.954 25 H 0.065 0.935 26 H 0.043 0.957 27 H -0.016 1.016 28 H -0.006 1.006 29 H 0.262 0.738 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.348 0.652 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.167 0.833 36 H 0.181 0.819 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.304 2.024 24.899 26.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.096 4.096 3 H 0.068 0.932 4 C -0.004 4.004 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.190 1.190 13 C -0.049 4.049 14 N -0.324 5.324 15 C -0.031 4.031 16 C -0.102 4.102 17 C -0.106 4.106 18 C -0.106 4.106 19 C -0.138 4.138 20 C 0.017 3.983 21 F -0.124 7.124 22 C 0.038 3.962 23 F -0.122 7.122 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.062 0.938 27 H 0.003 0.997 28 H 0.012 0.988 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.168 0.832 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.184 0.816 36 H 0.198 0.802 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.615 2.391 24.711 25.693 hybrid contribution 0.257 0.013 -1.352 1.377 sum -6.358 2.404 23.359 24.328 Atomic orbital electron populations 1.21636 0.94635 1.00943 1.01021 1.21025 0.96506 0.98741 0.93338 0.93201 1.18992 0.94125 0.94723 0.92552 1.21618 1.34566 1.08586 0.92157 0.92228 1.25945 0.95240 0.96102 1.02624 1.70091 1.40172 1.22970 1.24358 0.85568 0.79031 0.78681 0.78183 1.19541 1.20939 1.18999 1.21832 0.99554 0.94546 0.89001 1.60453 1.20389 1.50755 1.00840 1.20818 1.00870 0.95137 0.86251 1.19924 0.97708 0.94008 0.98546 1.21471 0.94135 1.01205 0.93744 1.21523 0.99753 0.92584 0.96699 1.21482 0.93565 0.98597 1.00150 1.18111 0.97702 0.85163 0.97366 1.91483 1.80872 1.47313 1.92770 1.17971 0.90319 0.96444 0.91423 1.91496 1.57160 1.89674 1.73893 0.93513 0.91569 0.93754 0.99733 0.98755 0.92910 0.92787 0.94680 0.83210 0.91185 0.91195 0.81578 0.80170 0.81227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 8.77 71.98 0.63 -3.87 16 2 C -0.08 -3.21 2.55 -10.79 -0.03 -3.23 16 3 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 4 C 0.03 1.79 4.45 29.85 0.13 1.92 16 5 C -0.53 -30.50 8.41 25.60 0.22 -30.29 16 6 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 7 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 8 N -0.94 -57.72 13.29 21.45 0.28 -57.44 16 9 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 13 C 0.08 2.74 5.14 86.30 0.44 3.18 16 14 N -0.69 -19.79 6.49 -517.92 -3.36 -23.15 16 15 C 0.10 2.26 5.50 85.56 0.47 2.73 16 16 C -0.10 -2.06 5.40 -19.83 -0.11 -2.16 16 17 C -0.09 -1.08 9.67 22.27 0.22 -0.87 16 18 C -0.09 -0.80 10.04 22.27 0.22 -0.58 16 19 C -0.12 -1.58 10.02 22.31 0.22 -1.35 16 20 C 0.04 0.80 7.31 22.41 0.16 0.97 16 21 F -0.15 -3.70 17.18 44.97 0.77 -2.93 16 22 C 0.06 1.50 7.25 22.41 0.16 1.67 16 23 F -0.14 -4.65 16.67 44.97 0.75 -3.90 16 24 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 25 H 0.07 1.91 6.68 -2.39 -0.02 1.90 16 26 H 0.04 1.75 6.95 -2.39 -0.02 1.73 16 27 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 28 H -0.01 -0.34 8.14 -2.39 -0.02 -0.35 16 29 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 30 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.35 8.87 6.98 -89.69 -0.63 8.24 16 33 H 0.07 1.82 8.08 -2.39 -0.02 1.80 16 34 H 0.07 1.28 7.95 -2.39 -0.02 1.26 16 35 H 0.17 1.14 8.00 -2.91 -0.02 1.12 16 36 H 0.18 0.24 8.06 -2.91 -0.02 0.22 16 37 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -70.18 319.41 4.13 -66.05 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 0.45 Total: 5.86 kcal Atomic # 6 Polarization: -34.74 SS G_CDS: 3.21 Total: -31.53 kcal Atomic # 7 Polarization: -77.51 SS G_CDS: -3.08 Total: -80.58 kcal Atomic # 9 Polarization: -8.35 SS G_CDS: 1.52 Total: -6.83 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -70.18 4.13 -66.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602730780.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.746 kcal (2) G-P(sol) polarization free energy of solvation -70.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds