Wall clock time and date at job start Mon Mar 30 2020 01:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47209 * 2 1 4 4 C 1.50694 * 109.47543 * 239.99109 * 2 1 3 5 5 H 1.07999 * 120.00338 * 240.00435 * 4 2 1 6 6 C 1.37879 * 119.99667 * 60.00268 * 4 2 1 7 7 N 1.31514 * 120.00120 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99968 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47105 * 90.00366 * 8 6 4 10 10 H 1.48506 * 109.46985 * 210.00085 * 8 6 4 11 11 H 1.48495 * 109.46990 * 329.99753 * 8 6 4 12 12 N 1.46906 * 109.46534 * 119.99505 * 2 1 3 13 13 C 1.46905 * 110.99844 * 275.00050 * 12 2 1 14 14 C 1.52997 * 109.46913 * 180.02562 * 13 12 2 15 15 H 1.09004 * 109.47261 * 60.00018 * 14 13 12 16 16 O 1.42905 * 109.47264 * 299.99929 * 14 13 12 17 17 C 1.53002 * 109.47143 * 179.97438 * 14 13 12 18 18 O 1.42898 * 109.46919 * 184.99791 * 17 14 13 19 19 C 1.42903 * 113.99797 * 180.02562 * 18 17 14 20 20 C 1.50696 * 109.47280 * 180.02562 * 19 18 17 21 21 C 1.34512 * 125.79186 * 89.71845 * 20 19 18 22 22 C 1.41379 * 106.84219 * 179.89132 * 21 20 19 23 23 C 1.34512 * 106.84185 * 0.36760 * 22 21 20 24 24 O 1.34303 * 108.41917 * 359.77680 * 23 22 21 25 25 H 1.08997 * 109.47443 * 300.00708 * 1 2 3 26 26 H 1.09008 * 109.46856 * 60.00762 * 1 2 3 27 27 H 1.09000 * 109.47384 * 180.02562 * 1 2 3 28 28 H 0.96996 * 120.00302 * 180.02562 * 7 6 4 29 29 H 1.00900 * 110.99295 * 151.05039 * 12 2 1 30 30 H 1.08992 * 109.46864 * 60.00452 * 13 12 2 31 31 H 1.09002 * 109.47085 * 300.00275 * 13 12 2 32 32 H 0.96702 * 113.99404 * 300.00214 * 16 14 13 33 33 H 1.08997 * 109.47011 * 304.99871 * 17 14 13 34 34 H 1.09005 * 109.46847 * 64.99998 * 17 14 13 35 35 H 1.08998 * 109.47133 * 300.00285 * 19 18 17 36 36 H 1.09009 * 109.46982 * 60.00047 * 19 18 17 37 37 H 1.08003 * 126.57543 * 0.02562 * 21 20 19 38 38 H 1.07997 * 126.57811 * 180.16424 * 22 21 20 39 39 H 1.08000 * 125.79220 * 179.75300 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2396 -2.4826 7 7 0.9429 0.8294 -2.6034 8 14 2.3215 -1.1208 -4.0077 9 1 1.3429 -2.1620 -4.4116 10 1 2.4869 -0.1418 -5.1121 11 1 3.6295 -1.7587 -3.7118 12 7 2.0195 -0.6924 1.1996 13 6 2.0823 0.2228 2.3470 14 6 2.5959 -0.5326 3.5743 15 1 3.5914 -0.9260 3.3686 16 8 1.7095 -1.6126 3.8744 17 6 2.6618 0.4208 4.7692 18 8 3.2500 -0.2527 5.8839 19 6 3.3584 0.5535 7.0588 20 6 3.9893 -0.2526 8.1648 21 6 5.3071 -0.3437 8.4186 22 6 5.4508 -1.1957 9.5376 23 6 4.2127 -1.5808 9.8958 24 8 3.3315 -1.0065 9.0607 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 0.7083 1.1605 -3.4844 29 1 2.9172 -1.1204 1.0289 30 1 1.0869 0.6165 2.5525 31 1 2.7587 1.0464 2.1183 32 1 0.8035 -1.3355 4.0683 33 1 3.2671 1.2888 4.5084 34 1 1.6547 0.7454 5.0310 35 1 3.9779 1.4247 6.8458 36 1 2.3656 0.8806 7.3680 37 1 6.1026 0.1426 7.8735 38 1 6.3771 -1.4848 10.0117 39 1 3.9687 -2.2403 10.7155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602865200.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:57 Heat of formation + Delta-G solvation = -79.549612 kcal Electronic energy + Delta-G solvation = -19886.515102 eV Core-core repulsion = 16603.217319 eV Total energy + Delta-G solvation = -3283.297783 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.76369 -38.63992 -36.90862 -35.19623 -33.25925 -32.51563 -31.39651 -30.02182 -27.94768 -25.98061 -25.24888 -23.84356 -21.99155 -21.43033 -20.72287 -19.78734 -17.75970 -17.21457 -16.65914 -16.37248 -16.06018 -15.68736 -15.27667 -14.77542 -14.73651 -13.94356 -13.60892 -13.26509 -13.22242 -13.06025 -12.88317 -12.40275 -12.18886 -11.92886 -11.63857 -11.36628 -10.95073 -10.74727 -10.49671 -10.39323 -10.16232 -10.15882 -10.11534 -9.86751 -9.53637 -8.84617 -8.77854 -8.48043 -7.26261 -6.03733 -4.09972 1.38999 2.32763 2.69959 3.30290 3.36450 3.39887 3.64315 4.38958 4.44948 4.67927 4.74697 4.77307 4.90401 4.98853 5.05586 5.11432 5.27668 5.32296 5.45287 5.55106 5.58595 5.67451 5.79216 5.82213 6.12073 6.23749 6.34847 6.84324 6.89522 6.93126 7.11219 7.21277 7.47364 7.77591 7.87046 8.02424 8.26142 8.37084 8.65757 9.00608 9.56122 11.02684 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.046263 B = 0.002700 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.084257 B =10367.630412 C =10557.677292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.211 3.789 3 H -0.001 1.001 4 C -0.518 4.518 5 H 0.061 0.939 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.677 5.677 13 C 0.033 3.967 14 C 0.115 3.885 15 H 0.100 0.900 16 O -0.539 6.539 17 C 0.031 3.969 18 O -0.371 6.371 19 C 0.140 3.860 20 C -0.014 4.014 21 C -0.188 4.188 22 C -0.219 4.219 23 C -0.034 4.034 24 O -0.171 6.171 25 H 0.002 0.998 26 H 0.080 0.920 27 H 0.032 0.968 28 H 0.261 0.739 29 H 0.332 0.668 30 H 0.067 0.933 31 H 0.028 0.972 32 H 0.369 0.631 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.560 1.256 22.375 23.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.104 3.896 3 H 0.017 0.983 4 C -0.556 4.556 5 H 0.079 0.921 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.309 5.309 13 C -0.098 4.098 14 C 0.055 3.945 15 H 0.118 0.882 16 O -0.343 6.343 17 C -0.047 4.047 18 O -0.290 6.290 19 C 0.064 3.936 20 C -0.064 4.064 21 C -0.207 4.207 22 C -0.238 4.238 23 C -0.102 4.102 24 O -0.067 6.067 25 H 0.021 0.979 26 H 0.099 0.901 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.150 0.850 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.215 0.785 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.167 0.833 38 H 0.167 0.833 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 5.140 0.563 22.274 22.866 hybrid contribution 0.768 0.791 -0.896 1.421 sum 5.909 1.354 21.377 22.220 Atomic orbital electron populations 1.21716 0.97868 0.99431 0.99211 1.19129 0.92670 0.92200 0.85632 0.98304 1.21270 1.31445 1.12498 0.90413 0.92129 1.24927 0.95060 0.94991 0.99092 1.69895 1.36709 1.22944 1.23473 0.86499 0.79260 0.79312 0.82343 1.20576 1.21304 1.19905 1.60618 1.32410 1.32426 1.05436 1.22493 1.00257 0.94614 0.92416 1.21922 0.95145 0.87335 0.90112 0.88173 1.86627 1.22800 1.33053 1.91803 1.23404 0.97586 0.96330 0.87350 1.88065 1.82588 1.38813 1.19565 1.20617 0.99985 0.90752 0.82242 1.21981 0.91156 0.99179 0.94048 1.21663 0.95773 1.03396 0.99902 1.21861 0.98607 1.03201 1.00099 1.24096 0.87823 1.01092 0.97189 1.84026 1.37722 1.49375 1.35539 0.97892 0.90114 0.94835 0.92932 0.85012 0.91414 0.95422 0.78491 0.92198 0.92662 0.90097 0.91568 0.83255 0.83285 0.77951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.09 9.19 37.16 0.34 -2.75 16 2 C 0.21 5.35 2.60 -68.86 -0.18 5.17 16 3 H 0.00 -0.02 7.80 -51.93 -0.40 -0.42 16 4 C -0.52 -14.31 8.59 -34.44 -0.30 -14.61 16 5 H 0.06 1.66 7.62 -52.49 -0.40 1.26 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.49 11.32 55.43 0.63 -24.86 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.68 -14.53 6.17 -107.95 -0.67 -15.19 16 13 C 0.03 0.56 5.15 -3.82 -0.02 0.54 16 14 C 0.12 1.71 3.45 -26.73 -0.09 1.61 16 15 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 16 O -0.54 -8.85 13.17 -40.06 -0.53 -9.37 16 17 C 0.03 0.36 5.57 37.16 0.21 0.57 16 18 O -0.37 -4.94 10.29 -40.06 -0.41 -5.35 16 19 C 0.14 1.44 6.47 36.00 0.23 1.67 16 20 C -0.01 -0.16 6.95 -35.63 -0.25 -0.40 16 21 C -0.19 -1.96 10.81 -39.70 -0.43 -2.39 16 22 C -0.22 -2.00 10.91 -39.70 -0.43 -2.43 16 23 C -0.03 -0.30 12.09 29.42 0.36 0.05 16 24 O -0.17 -2.01 10.65 5.70 0.06 -1.95 16 25 H 0.00 0.05 7.45 -51.93 -0.39 -0.34 16 26 H 0.08 2.18 6.07 -51.92 -0.32 1.87 16 27 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.33 7.10 8.22 -39.29 -0.32 6.78 16 30 H 0.07 1.13 7.43 -51.93 -0.39 0.75 16 31 H 0.03 0.47 8.06 -51.93 -0.42 0.05 16 32 H 0.37 4.88 9.05 45.56 0.41 5.29 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 37 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 38 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.20 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 332.58 15.07 5.01 5.01 Total: -1.00 -32.35 332.58 -6.74 -39.10 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.16 Total: 7.62 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -0.65 Total: -11.37 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: -0.04 Total: -40.05 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.88 Total: -16.68 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.35 -6.74 -39.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865200.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.451 kcal (2) G-P(sol) polarization free energy of solvation -32.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds