Wall clock time and date at job start Mon Mar 30 2020 01:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47209 * 2 1 4 4 C 1.50694 * 109.47543 * 239.99109 * 2 1 3 5 5 H 1.07999 * 120.00338 * 240.00435 * 4 2 1 6 6 C 1.37879 * 119.99667 * 60.00268 * 4 2 1 7 7 N 1.31514 * 120.00120 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99968 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47105 * 90.00366 * 8 6 4 10 10 H 1.48506 * 109.46985 * 210.00085 * 8 6 4 11 11 H 1.48495 * 109.46990 * 329.99753 * 8 6 4 12 12 N 1.46906 * 109.46534 * 119.99505 * 2 1 3 13 13 C 1.46905 * 110.99844 * 275.00050 * 12 2 1 14 14 C 1.52997 * 109.46913 * 180.02562 * 13 12 2 15 15 H 1.09004 * 109.47261 * 60.00018 * 14 13 12 16 16 O 1.42905 * 109.47264 * 299.99929 * 14 13 12 17 17 C 1.53002 * 109.47143 * 179.97438 * 14 13 12 18 18 O 1.42898 * 109.46919 * 184.99791 * 17 14 13 19 19 C 1.42903 * 113.99797 * 180.02562 * 18 17 14 20 20 C 1.50696 * 109.47280 * 180.02562 * 19 18 17 21 21 C 1.34512 * 125.79186 * 89.71845 * 20 19 18 22 22 C 1.41379 * 106.84219 * 179.89132 * 21 20 19 23 23 C 1.34512 * 106.84185 * 0.36760 * 22 21 20 24 24 O 1.34303 * 108.41917 * 359.77680 * 23 22 21 25 25 H 1.08997 * 109.47443 * 300.00708 * 1 2 3 26 26 H 1.09008 * 109.46856 * 60.00762 * 1 2 3 27 27 H 1.09000 * 109.47384 * 180.02562 * 1 2 3 28 28 H 0.96996 * 120.00302 * 180.02562 * 7 6 4 29 29 H 1.00900 * 110.99295 * 151.05039 * 12 2 1 30 30 H 1.08992 * 109.46864 * 60.00452 * 13 12 2 31 31 H 1.09002 * 109.47085 * 300.00275 * 13 12 2 32 32 H 0.96702 * 113.99404 * 300.00214 * 16 14 13 33 33 H 1.08997 * 109.47011 * 304.99871 * 17 14 13 34 34 H 1.09005 * 109.46847 * 64.99998 * 17 14 13 35 35 H 1.08998 * 109.47133 * 300.00285 * 19 18 17 36 36 H 1.09009 * 109.46982 * 60.00047 * 19 18 17 37 37 H 1.08003 * 126.57543 * 0.02562 * 21 20 19 38 38 H 1.07997 * 126.57811 * 180.16424 * 22 21 20 39 39 H 1.08000 * 125.79220 * 179.75300 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2396 -2.4826 7 7 0.9429 0.8294 -2.6034 8 14 2.3215 -1.1208 -4.0077 9 1 1.3429 -2.1620 -4.4116 10 1 2.4869 -0.1418 -5.1121 11 1 3.6295 -1.7587 -3.7118 12 7 2.0195 -0.6924 1.1996 13 6 2.0823 0.2228 2.3470 14 6 2.5959 -0.5326 3.5743 15 1 3.5914 -0.9260 3.3686 16 8 1.7095 -1.6126 3.8744 17 6 2.6618 0.4208 4.7692 18 8 3.2500 -0.2527 5.8839 19 6 3.3584 0.5535 7.0588 20 6 3.9893 -0.2526 8.1648 21 6 5.3071 -0.3437 8.4186 22 6 5.4508 -1.1957 9.5376 23 6 4.2127 -1.5808 9.8958 24 8 3.3315 -1.0065 9.0607 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 0.7083 1.1605 -3.4844 29 1 2.9172 -1.1204 1.0289 30 1 1.0869 0.6165 2.5525 31 1 2.7587 1.0464 2.1183 32 1 0.8035 -1.3355 4.0683 33 1 3.2671 1.2888 4.5084 34 1 1.6547 0.7454 5.0310 35 1 3.9779 1.4247 6.8458 36 1 2.3656 0.8806 7.3680 37 1 6.1026 0.1426 7.8735 38 1 6.3771 -1.4848 10.0117 39 1 3.9687 -2.2403 10.7155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602865200.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:56 Heat of formation + Delta-G solvation = -104.310288 kcal Electronic energy + Delta-G solvation = -19887.588805 eV Core-core repulsion = 16603.217319 eV Total energy + Delta-G solvation = -3284.371486 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.49718 -39.70821 -38.17331 -36.85491 -34.40755 -34.00496 -32.33758 -31.40661 -29.45286 -27.38524 -26.75765 -25.16950 -22.71858 -22.64852 -21.72431 -21.48783 -18.72688 -18.49542 -17.93295 -17.55050 -17.13442 -16.87426 -16.51649 -16.18536 -15.80833 -15.42971 -15.18050 -14.78691 -14.30504 -14.01634 -13.77536 -13.60521 -13.44400 -13.16741 -13.02485 -12.82282 -12.66772 -12.60474 -12.28974 -12.19019 -12.01024 -11.70704 -10.99338 -10.89942 -10.79054 -10.68912 -10.56781 -9.52482 -9.01756 -8.14268 -6.28047 0.63931 1.41978 1.43371 1.53285 1.62130 2.01770 2.40967 2.73472 3.14343 3.51690 3.68974 3.85420 4.00969 4.08571 4.10210 4.15789 4.24537 4.32296 4.36142 4.47556 4.51680 4.74774 4.83915 4.88210 4.98525 5.07861 5.11481 5.15054 5.22097 5.47012 5.56953 5.66252 5.85910 6.08750 6.16816 6.22817 6.46011 6.76041 6.92225 7.01247 7.42376 8.91278 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.046263 B = 0.002700 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.084257 B =10367.630412 C =10557.677292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.215 3.785 3 H -0.027 1.027 4 C -0.539 4.539 5 H 0.056 0.944 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 0.962 3.038 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.269 1.269 12 N -0.681 5.681 13 C 0.036 3.964 14 C 0.123 3.877 15 H 0.089 0.911 16 O -0.561 6.561 17 C 0.038 3.962 18 O -0.398 6.398 19 C 0.138 3.862 20 C -0.044 4.044 21 C -0.197 4.197 22 C -0.232 4.232 23 C -0.035 4.035 24 O -0.193 6.193 25 H 0.026 0.974 26 H 0.056 0.944 27 H 0.025 0.975 28 H 0.263 0.737 29 H 0.331 0.669 30 H 0.074 0.926 31 H 0.033 0.967 32 H 0.381 0.619 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.161 0.839 38 H 0.172 0.828 39 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.127 1.126 23.412 24.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 H -0.010 1.010 4 C -0.578 4.578 5 H 0.075 0.925 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.788 3.212 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.193 1.193 12 N -0.312 5.312 13 C -0.094 4.094 14 C 0.063 3.937 15 H 0.107 0.893 16 O -0.367 6.367 17 C -0.039 4.039 18 O -0.319 6.319 19 C 0.063 3.937 20 C -0.093 4.093 21 C -0.216 4.216 22 C -0.251 4.251 23 C -0.102 4.102 24 O -0.090 6.090 25 H 0.045 0.955 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.148 0.852 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.230 0.770 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.095 0.905 37 H 0.179 0.821 38 H 0.189 0.811 39 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 5.707 0.439 23.335 24.026 hybrid contribution 0.615 0.820 -1.117 1.516 sum 6.321 1.259 22.218 23.134 Atomic orbital electron populations 1.21541 0.97634 0.98786 0.99176 1.18937 0.92828 0.90776 0.86759 1.00983 1.21600 1.31740 1.12659 0.91784 0.92542 1.25719 0.95190 0.95682 1.01996 1.70010 1.37411 1.24004 1.24204 0.85494 0.78829 0.78220 0.78700 1.20219 1.20723 1.19307 1.60530 1.32390 1.33105 1.05162 1.22536 1.00933 0.94251 0.91692 1.21766 0.94124 0.87276 0.90538 0.89314 1.86586 1.23959 1.34227 1.91889 1.23254 0.99077 0.95521 0.86029 1.88003 1.82903 1.40335 1.20610 1.20824 1.01153 0.90821 0.80942 1.22324 0.91782 1.00342 0.94896 1.22015 0.95870 1.03418 1.00339 1.22236 0.99774 1.03094 0.99972 1.24903 0.87571 1.00555 0.97182 1.84012 1.38858 1.49919 1.36201 0.95542 0.92484 0.95594 0.92785 0.85220 0.90802 0.94936 0.77047 0.90320 0.90861 0.87808 0.90474 0.82128 0.81064 0.74471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.63 9.19 71.98 0.66 -4.97 16 2 C 0.22 10.99 2.60 44.17 0.11 11.10 16 3 H -0.03 -1.52 7.80 -2.39 -0.02 -1.53 16 4 C -0.54 -30.01 8.59 25.60 0.22 -29.79 16 5 H 0.06 3.11 7.62 -2.91 -0.02 3.09 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -52.78 11.32 21.45 0.24 -52.53 16 8 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 9 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 12 N -0.68 -29.06 6.17 -495.46 -3.06 -32.12 16 13 C 0.04 1.19 5.15 86.30 0.44 1.64 16 14 C 0.12 3.51 3.45 30.59 0.11 3.62 16 15 H 0.09 2.73 8.14 -2.38 -0.02 2.71 16 16 O -0.56 -17.87 13.17 -144.36 -1.90 -19.78 16 17 C 0.04 0.83 5.57 71.98 0.40 1.23 16 18 O -0.40 -10.07 10.29 -144.36 -1.49 -11.56 16 19 C 0.14 2.63 6.47 71.23 0.46 3.09 16 20 C -0.04 -0.97 6.95 24.83 0.17 -0.80 16 21 C -0.20 -3.91 10.81 22.19 0.24 -3.67 16 22 C -0.23 -3.88 10.91 22.19 0.24 -3.63 16 23 C -0.03 -0.57 12.09 66.97 0.81 0.24 16 24 O -0.19 -4.40 10.65 -2.51 -0.03 -4.43 16 25 H 0.03 1.14 7.45 -2.39 -0.02 1.12 16 26 H 0.06 3.11 6.07 -2.38 -0.01 3.10 16 27 H 0.02 1.27 8.14 -2.39 -0.02 1.26 16 28 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.33 14.19 8.22 -89.69 -0.74 13.45 16 30 H 0.07 2.35 7.43 -2.39 -0.02 2.33 16 31 H 0.03 1.06 8.06 -2.39 -0.02 1.04 16 32 H 0.38 9.62 9.05 -74.06 -0.67 8.95 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 38 H 0.17 1.92 8.06 -2.91 -0.02 1.89 16 39 H 0.24 1.70 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -69.15 332.58 -0.23 -69.39 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: -0.35 Total: 25.97 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 4.32 Total: -20.75 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -2.81 Total: -84.65 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -3.41 Total: -35.76 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -69.15 -0.23 -69.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865200.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.921 kcal (2) G-P(sol) polarization free energy of solvation -69.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds