Wall clock time and date at job start Mon Mar 30 2020 01:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47157 * 2 1 4 4 C 1.50708 * 109.46890 * 119.99499 * 2 1 3 5 5 H 1.07993 * 120.00017 * 120.00163 * 4 2 1 6 6 C 1.37882 * 120.00095 * 300.00075 * 4 2 1 7 7 N 1.31520 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86788 * 120.00176 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47352 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47213 * 119.99945 * 8 6 4 11 11 H 1.48497 * 109.47654 * 240.00174 * 8 6 4 12 12 N 1.46898 * 109.47374 * 239.99496 * 2 1 3 13 13 C 1.46890 * 110.99812 * 85.00156 * 12 2 1 14 14 C 1.53009 * 109.47140 * 179.97438 * 13 12 2 15 15 H 1.09001 * 109.46642 * 304.99907 * 14 13 12 16 16 O 1.42900 * 109.46870 * 64.99718 * 14 13 12 17 17 C 1.52999 * 109.46984 * 185.00047 * 14 13 12 18 18 O 1.42905 * 109.46728 * 175.00138 * 17 14 13 19 19 C 1.42899 * 113.99778 * 179.97438 * 18 17 14 20 20 C 1.50699 * 109.46785 * 179.97438 * 19 18 17 21 21 C 1.34513 * 125.78997 * 89.71643 * 20 19 18 22 22 C 1.41386 * 106.83981 * 179.88396 * 21 20 19 23 23 C 1.34509 * 106.83985 * 0.37732 * 22 21 20 24 24 O 1.34299 * 108.42486 * 359.76637 * 23 22 21 25 25 H 1.08994 * 109.47374 * 300.00346 * 1 2 3 26 26 H 1.08997 * 109.46864 * 60.00917 * 1 2 3 27 27 H 1.09000 * 109.46749 * 180.02562 * 1 2 3 28 28 H 0.97001 * 119.99706 * 179.97438 * 7 6 4 29 29 H 1.00903 * 110.99991 * 208.95777 * 12 2 1 30 30 H 1.09003 * 109.47675 * 60.00153 * 13 12 2 31 31 H 1.08996 * 109.47404 * 299.99758 * 13 12 2 32 32 H 0.96702 * 113.99716 * 60.00481 * 16 14 13 33 33 H 1.09000 * 109.47486 * 55.00077 * 17 14 13 34 34 H 1.09001 * 109.47362 * 294.99354 * 17 14 13 35 35 H 1.08997 * 109.47171 * 299.99768 * 19 18 17 36 36 H 1.08997 * 109.47442 * 59.99964 * 19 18 17 37 37 H 1.07998 * 126.58296 * 0.02562 * 21 20 19 38 38 H 1.08004 * 126.58002 * 180.15861 * 22 21 20 39 39 H 1.08000 * 125.78616 * 179.75301 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4829 7 7 0.9426 0.8299 2.6034 8 14 2.3211 -1.1200 4.0081 9 1 3.1462 -2.2867 3.6042 10 1 3.1463 -0.1870 4.8166 11 1 1.1659 -1.5863 4.8163 12 7 2.0197 -0.6926 -1.1993 13 6 2.0825 0.2224 -2.3468 14 6 2.5964 -0.5332 -3.5740 15 1 3.5522 -1.0013 -3.3386 16 8 1.6515 -1.5393 -3.9440 17 6 2.7803 0.4457 -4.7354 18 8 3.3692 -0.2364 -5.8445 19 6 3.5844 0.5922 -6.9887 20 6 4.2063 -0.2256 -8.0912 21 6 3.5371 -0.9117 -9.0350 22 6 4.5071 -1.5261 -9.8600 23 6 5.7110 -1.1855 -9.3659 24 8 5.5227 -0.3977 -8.2947 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 0.7079 1.1611 3.4843 29 1 2.9173 -1.1206 -1.0285 30 1 2.7589 1.0460 -2.1182 31 1 1.0872 0.6161 -2.5525 32 1 0.7764 -1.1939 -4.1674 33 1 3.4320 1.2618 -4.4232 34 1 1.8105 0.8472 -5.0293 35 1 2.6311 0.9964 -7.3291 36 1 4.2525 1.4115 -6.7235 37 1 2.4646 -0.9784 -9.1434 38 1 4.3178 -2.1520 -10.7196 39 1 6.6668 -1.4936 -9.7632 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602865202.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:00 Heat of formation + Delta-G solvation = -104.600943 kcal Electronic energy + Delta-G solvation = -19882.848585 eV Core-core repulsion = 16598.464495 eV Total energy + Delta-G solvation = -3284.384090 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.49819 -39.71355 -38.17382 -36.86978 -34.41917 -34.00541 -32.33740 -31.40914 -29.44460 -27.38948 -26.75857 -25.17523 -22.72666 -22.65414 -21.73221 -21.48770 -18.73790 -18.49535 -17.93400 -17.56853 -17.12920 -16.86788 -16.53365 -16.11897 -15.88212 -15.25688 -15.21727 -15.01699 -14.27711 -13.88218 -13.77465 -13.62414 -13.43695 -13.27131 -12.96673 -12.84188 -12.67081 -12.60303 -12.29470 -12.19216 -12.00806 -11.72772 -10.98808 -10.89673 -10.77155 -10.71019 -10.57544 -9.52468 -9.02399 -8.14756 -6.28379 0.63898 1.40571 1.42778 1.54615 1.62381 2.01613 2.40726 2.73384 3.13931 3.52671 3.66754 3.84917 4.01748 4.07968 4.10462 4.15861 4.22913 4.32602 4.37242 4.46890 4.50905 4.74415 4.83827 4.88340 4.99006 5.07872 5.11195 5.15103 5.21932 5.47033 5.57195 5.66227 5.85707 6.08597 6.16717 6.22666 6.45380 6.75910 6.92709 7.01213 7.42046 8.91013 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.044190 B = 0.002715 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.479439 B =10312.474231 C =10536.996609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.215 3.785 3 H -0.027 1.027 4 C -0.539 4.539 5 H 0.056 0.944 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 0.962 3.038 9 H -0.269 1.269 10 H -0.279 1.279 11 H -0.279 1.279 12 N -0.682 5.682 13 C 0.037 3.963 14 C 0.124 3.876 15 H 0.086 0.914 16 O -0.560 6.560 17 C 0.038 3.962 18 O -0.398 6.398 19 C 0.138 3.862 20 C -0.045 4.045 21 C -0.195 4.195 22 C -0.232 4.232 23 C -0.036 4.036 24 O -0.194 6.194 25 H 0.056 0.944 26 H 0.026 0.974 27 H 0.025 0.975 28 H 0.263 0.737 29 H 0.330 0.670 30 H 0.031 0.969 31 H 0.075 0.925 32 H 0.382 0.618 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.162 0.838 38 H 0.172 0.828 39 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.615 0.956 -23.638 24.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 H -0.010 1.010 4 C -0.577 4.577 5 H 0.074 0.926 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.788 3.212 9 H -0.193 1.193 10 H -0.205 1.205 11 H -0.205 1.205 12 N -0.313 5.313 13 C -0.094 4.094 14 C 0.064 3.936 15 H 0.104 0.896 16 O -0.366 6.366 17 C -0.039 4.039 18 O -0.319 6.319 19 C 0.063 3.937 20 C -0.094 4.094 21 C -0.214 4.214 22 C -0.250 4.250 23 C -0.103 4.103 24 O -0.091 6.091 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.148 0.852 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.231 0.769 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.179 0.821 38 H 0.190 0.810 39 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 5.680 0.379 -23.368 24.052 hybrid contribution 0.355 0.768 1.012 1.319 sum 6.035 1.147 -22.356 23.185 Atomic orbital electron populations 1.21535 0.97575 0.98807 0.99195 1.18947 0.92878 0.90768 0.86754 1.00990 1.21629 1.31648 1.12630 0.91781 0.92568 1.25723 0.95186 0.95709 1.02008 1.70022 1.37418 1.24037 1.24153 0.85438 0.78133 0.78579 0.79055 1.19301 1.20478 1.20525 1.60540 1.32354 1.33175 1.05221 1.22546 1.00958 0.94192 0.91662 1.21739 0.92841 0.88615 0.90420 0.89603 1.86595 1.24754 1.35566 1.89730 1.23259 0.99137 0.95116 0.86377 1.88005 1.83038 1.37703 1.23114 1.20822 0.99933 0.90433 0.82534 1.22327 0.80899 1.05715 1.00504 1.22014 1.01839 1.00386 0.97199 1.22243 0.92212 1.06284 1.04306 1.24898 1.02128 0.95276 0.87962 1.84010 1.26627 1.55806 1.42669 0.92488 0.95488 0.95580 0.92788 0.85248 0.95053 0.90620 0.76927 0.90882 0.90263 0.87683 0.90609 0.82083 0.81040 0.74491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.61 9.19 71.98 0.66 -4.95 16 2 C 0.21 10.98 2.60 44.17 0.11 11.09 16 3 H -0.03 -1.52 7.80 -2.38 -0.02 -1.54 16 4 C -0.54 -30.01 8.59 25.60 0.22 -29.79 16 5 H 0.06 3.11 7.62 -2.91 -0.02 3.09 16 6 C 0.01 0.72 5.30 84.66 0.45 1.17 16 7 N -0.92 -52.79 11.32 21.45 0.24 -52.54 16 8 Si 0.96 43.87 29.54 68.60 2.03 45.89 16 9 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 12 N -0.68 -29.19 6.25 -495.44 -3.10 -32.29 16 13 C 0.04 1.21 5.12 86.31 0.44 1.65 16 14 C 0.12 3.55 3.43 30.60 0.10 3.65 16 15 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 16 O -0.56 -17.43 13.25 -144.34 -1.91 -19.34 16 17 C 0.04 0.83 5.57 71.98 0.40 1.23 16 18 O -0.40 -10.09 10.29 -144.34 -1.49 -11.58 16 19 C 0.14 2.64 6.47 71.24 0.46 3.10 16 20 C -0.05 -1.00 6.95 24.83 0.17 -0.83 16 21 C -0.20 -3.86 10.81 22.19 0.24 -3.62 16 22 C -0.23 -3.87 10.91 22.19 0.24 -3.63 16 23 C -0.04 -0.58 12.09 66.97 0.81 0.23 16 24 O -0.19 -4.43 10.65 -2.51 -0.03 -4.46 16 25 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 26 H 0.03 1.16 7.45 -2.39 -0.02 1.14 16 27 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.26 14.30 8.31 -92.71 -0.77 13.52 16 29 H 0.33 14.21 8.22 -89.69 -0.74 13.47 16 30 H 0.03 1.03 8.06 -2.39 -0.02 1.01 16 31 H 0.08 2.40 7.44 -2.39 -0.02 2.38 16 32 H 0.38 9.06 9.05 -74.06 -0.67 8.39 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 38 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 39 H 0.24 1.71 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -69.43 332.68 -0.29 -69.72 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: -0.35 Total: 25.29 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: 4.32 Total: -20.69 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -2.85 Total: -84.83 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -3.43 Total: -35.38 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -69.43 -0.29 -69.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865202.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.879 kcal (2) G-P(sol) polarization free energy of solvation -69.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds