Wall clock time and date at job start Mon Mar 30 2020 01:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.55292 * 2 1 4 4 C 1.53289 * 109.51220 * 239.87129 * 2 1 3 5 5 N 1.47158 * 108.41705 * 187.71993 * 4 2 1 6 6 C 1.34774 * 120.99282 * 230.55395 * 5 4 2 7 7 O 1.21697 * 119.99739 * 355.37676 * 6 5 4 8 8 C 1.46371 * 120.00074 * 175.37469 * 6 5 4 9 9 H 1.07999 * 120.00149 * 7.49759 * 8 6 5 10 10 C 1.40052 * 120.00120 * 187.49327 * 8 6 5 11 11 N 1.30677 * 119.99680 * 0.02562 * 10 8 6 12 12 Si 1.86793 * 120.00052 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47179 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47328 * 120.00149 * 12 10 8 15 15 H 1.48505 * 109.47197 * 239.99878 * 12 10 8 16 16 C 1.47176 * 118.01693 * 50.57321 * 5 4 2 17 17 C 1.53175 * 108.41201 * 309.60199 * 16 5 4 18 18 C 1.53079 * 109.47050 * 291.99895 * 17 16 5 19 19 C 1.53113 * 109.15013 * 183.25022 * 18 17 16 20 20 O 1.42897 * 109.40294 * 57.47581 * 19 18 17 21 21 C 1.42906 * 114.14625 * 298.82410 * 20 19 18 22 22 C 1.53063 * 109.50672 * 172.28334 * 17 16 5 23 23 O 1.42925 * 109.40505 * 52.09170 * 17 16 5 24 24 H 1.09007 * 109.47243 * 180.13130 * 1 2 3 25 25 H 1.09008 * 109.47375 * 300.12775 * 1 2 3 26 26 H 1.08998 * 109.47442 * 60.12817 * 1 2 3 27 27 H 1.09002 * 109.67479 * 67.99190 * 4 2 1 28 28 H 1.08996 * 109.70759 * 307.46883 * 4 2 1 29 29 H 0.97003 * 119.99556 * 180.02562 * 11 10 8 30 30 H 1.08998 * 109.68023 * 69.33969 * 16 5 4 31 31 H 1.09001 * 109.68102 * 189.85955 * 16 5 4 32 32 H 1.08994 * 109.52825 * 303.15413 * 18 17 16 33 33 H 1.08995 * 109.52372 * 63.35352 * 18 17 16 34 34 H 1.09001 * 109.48682 * 297.49757 * 19 18 17 35 35 H 1.09005 * 109.48360 * 177.45744 * 19 18 17 36 36 H 1.08996 * 109.48492 * 301.19907 * 21 20 19 37 37 H 1.09003 * 109.48233 * 181.15437 * 21 20 19 38 38 H 1.08999 * 109.52684 * 296.63613 * 22 17 16 39 39 H 1.09003 * 109.52474 * 56.76328 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0419 -0.7252 -1.2497 5 7 3.5013 -0.8755 -1.1348 6 6 4.3185 -0.5026 -2.1396 7 8 3.8494 -0.1126 -3.1926 8 6 5.7703 -0.5668 -1.9643 9 1 6.1877 -1.0245 -1.0797 10 6 6.6181 -0.0346 -2.9439 11 7 6.1130 0.5196 -4.0141 12 14 8.4708 -0.1171 -2.7205 13 1 8.7849 -0.7884 -1.4337 14 1 9.0707 -0.8865 -3.8401 15 1 9.0299 1.2586 -2.7099 16 6 4.0419 -1.4454 0.1098 17 6 3.4311 -0.6890 1.2935 18 6 3.9575 0.7483 1.3070 19 6 3.4066 1.4735 2.5379 20 8 3.7845 0.7608 3.7174 21 6 3.2783 -0.5741 3.7812 22 6 3.8241 -1.3819 2.6005 23 8 2.0076 -0.6766 1.1655 24 1 -0.3634 -1.0277 0.0024 25 1 -0.3634 0.5158 0.8889 26 1 -0.3634 0.5118 -0.8911 27 1 1.8020 -0.1403 -2.1376 28 1 1.5763 -1.7082 -1.3208 29 1 6.7003 0.8878 -4.6927 30 1 3.7796 -2.5014 0.1742 31 1 5.1262 -1.3348 0.1236 32 1 5.0466 0.7370 1.3479 33 1 3.6313 1.2643 0.4040 34 1 2.3195 1.5220 2.4751 35 1 3.8141 2.4837 2.5773 36 1 2.1896 -0.5527 3.7346 37 1 3.5934 -1.0382 4.7158 38 1 3.4028 -2.3870 2.6209 39 1 4.9104 -1.4408 2.6692 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619242809.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:04 Heat of formation + Delta-G solvation = -125.494721 kcal Electronic energy + Delta-G solvation = -22503.901240 eV Core-core repulsion = 19218.611128 eV Total energy + Delta-G solvation = -3285.290112 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.35599 -37.98743 -36.62553 -33.79492 -33.37174 -32.45278 -30.96917 -30.52948 -27.38416 -26.64056 -24.77862 -23.62360 -22.62964 -21.29299 -19.54640 -18.93806 -16.70367 -16.40890 -16.07424 -15.84073 -15.51530 -14.92970 -14.59222 -14.40106 -14.31509 -13.96301 -13.62071 -12.80498 -12.60554 -12.37203 -12.30638 -11.93453 -11.88069 -11.63949 -11.51662 -11.37809 -11.19975 -11.10869 -11.01583 -10.73624 -10.29501 -10.22137 -10.11714 -9.92210 -9.47579 -9.21545 -8.91989 -7.67175 -7.25061 -6.27876 -4.72338 3.07871 3.16637 3.20314 3.85061 4.00697 4.03831 4.38416 4.47880 4.90339 5.01194 5.04334 5.19409 5.24138 5.40264 5.46471 5.53006 5.55321 5.66471 5.73160 5.80093 5.82140 5.87381 5.96070 6.04610 6.11453 6.14017 6.19856 6.27378 6.37104 6.43345 6.49020 6.59408 7.33219 7.37753 7.45066 7.58226 8.03256 8.25723 8.94847 9.32810 10.48802 10.67191 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019682 B = 0.007285 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.309428 B = 3842.821378 C = 4740.005952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.071 3.929 3 H 0.061 0.939 4 C 0.094 3.906 5 N -0.643 5.643 6 C 0.561 3.439 7 O -0.577 6.577 8 C -0.543 4.543 9 H 0.072 0.928 10 C 0.088 3.912 11 N -0.768 5.768 12 Si 0.906 3.094 13 H -0.263 1.263 14 H -0.275 1.275 15 H -0.276 1.276 16 C 0.104 3.896 17 C 0.106 3.894 18 C -0.174 4.174 19 C 0.067 3.933 20 O -0.387 6.387 21 C 0.066 3.934 22 C -0.138 4.138 23 O -0.375 6.375 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.048 0.952 29 H 0.269 0.731 30 H 0.049 0.951 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.050 0.950 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.434 -1.286 12.754 13.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.013 3.987 3 H 0.078 0.922 4 C -0.031 4.031 5 N -0.381 5.381 6 C 0.367 3.633 7 O -0.459 6.459 8 C -0.579 4.579 9 H 0.090 0.910 10 C -0.132 4.132 11 N -0.396 5.396 12 Si 0.730 3.270 13 H -0.187 1.187 14 H -0.201 1.201 15 H -0.201 1.201 16 C -0.021 4.021 17 C 0.065 3.935 18 C -0.212 4.212 19 C -0.010 4.010 20 O -0.306 6.306 21 C -0.010 4.010 22 C -0.176 4.176 23 O -0.295 6.295 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.108 0.892 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.658 -0.975 12.223 13.504 hybrid contribution 0.928 -0.131 -0.369 1.007 sum -4.730 -1.106 11.854 12.810 Atomic orbital electron populations 1.21697 0.93267 1.02621 1.02077 1.22508 0.94324 0.95935 0.85966 0.92152 1.21818 0.83851 0.99568 0.97826 1.48273 1.04209 1.68576 1.17056 1.18272 0.86982 0.76722 0.81300 1.90598 1.76976 1.51647 1.26682 1.20954 0.89199 1.41242 1.06526 0.90959 1.25723 1.00284 0.93090 0.94085 1.70016 1.36004 1.27187 1.06414 0.86343 0.82946 0.78529 0.79181 1.18670 1.20068 1.20095 1.22031 1.00536 0.95556 0.83979 1.21802 0.81477 0.94959 0.95229 1.22652 1.02619 0.96635 0.99249 1.22513 0.98893 0.95163 0.84392 1.87865 1.75698 1.25822 1.41226 1.22476 0.98226 0.82614 0.97716 1.22128 1.02104 0.99856 0.93503 1.87830 1.20490 1.77532 1.43664 0.91976 0.92258 0.91065 0.89249 0.93371 0.92055 0.93267 0.88153 0.89815 0.89777 0.93160 0.89271 0.92644 0.89305 0.90212 0.89569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.57 37.16 0.36 -1.43 16 2 C 0.07 1.16 3.02 -26.58 -0.08 1.08 16 3 H 0.06 1.04 6.20 -51.93 -0.32 0.72 16 4 C 0.09 1.86 5.91 -3.53 -0.02 1.83 16 5 N -0.64 -14.54 2.61 -173.99 -0.45 -14.99 16 6 C 0.56 15.70 7.62 -12.99 -0.10 15.60 16 7 O -0.58 -18.41 14.55 5.19 0.08 -18.34 16 8 C -0.54 -14.86 8.86 -35.63 -0.32 -15.18 16 9 H 0.07 1.81 5.73 -52.49 -0.30 1.51 16 10 C 0.09 2.40 5.50 -17.36 -0.10 2.31 16 11 N -0.77 -22.62 11.86 55.55 0.66 -21.96 16 12 Si 0.91 19.75 29.56 -169.99 -5.02 14.73 16 13 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 14 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 15 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 16 C 0.10 1.96 5.22 -3.58 -0.02 1.94 16 17 C 0.11 1.70 0.69 -90.46 -0.06 1.64 16 18 C -0.17 -2.86 4.46 -26.63 -0.12 -2.97 16 19 C 0.07 0.96 6.70 37.22 0.25 1.21 16 20 O -0.39 -5.66 10.76 -35.23 -0.38 -6.03 16 21 C 0.07 0.83 6.70 37.22 0.25 1.08 16 22 C -0.14 -1.82 5.15 -26.64 -0.14 -1.95 16 23 O -0.38 -6.12 8.87 -35.23 -0.31 -6.43 16 24 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 25 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.09 1.94 7.11 -51.93 -0.37 1.57 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.10 1.97 5.40 -51.93 -0.28 1.69 16 32 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.08 1.57 6.06 -51.93 -0.31 1.26 16 34 H 0.05 0.71 7.83 -51.93 -0.41 0.30 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.06 0.70 7.83 -51.93 -0.41 0.30 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 304.78 15.07 4.59 4.59 Total: -1.00 -33.14 304.78 -6.70 -39.84 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -5.76 Total: 3.44 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -0.09 Total: 5.15 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.20 Total: -36.95 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.62 Total: -30.81 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.14 -6.70 -39.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619242809.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.652 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds