Wall clock time and date at job start Mon Mar 30 2020 01:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.55292 * 2 1 4 4 C 1.53289 * 109.51220 * 239.87129 * 2 1 3 5 5 N 1.47158 * 108.41705 * 187.71993 * 4 2 1 6 6 C 1.34774 * 120.99282 * 230.55395 * 5 4 2 7 7 O 1.21697 * 119.99739 * 355.37676 * 6 5 4 8 8 C 1.46371 * 120.00074 * 175.37469 * 6 5 4 9 9 H 1.07999 * 120.00149 * 7.49759 * 8 6 5 10 10 C 1.40052 * 120.00120 * 187.49327 * 8 6 5 11 11 N 1.30677 * 119.99680 * 0.02562 * 10 8 6 12 12 Si 1.86793 * 120.00052 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47179 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47328 * 120.00149 * 12 10 8 15 15 H 1.48505 * 109.47197 * 239.99878 * 12 10 8 16 16 C 1.47176 * 118.01693 * 50.57321 * 5 4 2 17 17 C 1.53175 * 108.41201 * 309.60199 * 16 5 4 18 18 C 1.53079 * 109.47050 * 291.99895 * 17 16 5 19 19 C 1.53113 * 109.15013 * 183.25022 * 18 17 16 20 20 O 1.42897 * 109.40294 * 57.47581 * 19 18 17 21 21 C 1.42906 * 114.14625 * 298.82410 * 20 19 18 22 22 C 1.53063 * 109.50672 * 172.28334 * 17 16 5 23 23 O 1.42925 * 109.40505 * 52.09170 * 17 16 5 24 24 H 1.09007 * 109.47243 * 180.13130 * 1 2 3 25 25 H 1.09008 * 109.47375 * 300.12775 * 1 2 3 26 26 H 1.08998 * 109.47442 * 60.12817 * 1 2 3 27 27 H 1.09002 * 109.67479 * 67.99190 * 4 2 1 28 28 H 1.08996 * 109.70759 * 307.46883 * 4 2 1 29 29 H 0.97003 * 119.99556 * 180.02562 * 11 10 8 30 30 H 1.08998 * 109.68023 * 69.33969 * 16 5 4 31 31 H 1.09001 * 109.68102 * 189.85955 * 16 5 4 32 32 H 1.08994 * 109.52825 * 303.15413 * 18 17 16 33 33 H 1.08995 * 109.52372 * 63.35352 * 18 17 16 34 34 H 1.09001 * 109.48682 * 297.49757 * 19 18 17 35 35 H 1.09005 * 109.48360 * 177.45744 * 19 18 17 36 36 H 1.08996 * 109.48492 * 301.19907 * 21 20 19 37 37 H 1.09003 * 109.48233 * 181.15437 * 21 20 19 38 38 H 1.08999 * 109.52684 * 296.63613 * 22 17 16 39 39 H 1.09003 * 109.52474 * 56.76328 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0419 -0.7252 -1.2497 5 7 3.5013 -0.8755 -1.1348 6 6 4.3185 -0.5026 -2.1396 7 8 3.8494 -0.1126 -3.1926 8 6 5.7703 -0.5668 -1.9643 9 1 6.1877 -1.0245 -1.0797 10 6 6.6181 -0.0346 -2.9439 11 7 6.1130 0.5196 -4.0141 12 14 8.4708 -0.1171 -2.7205 13 1 8.7849 -0.7884 -1.4337 14 1 9.0707 -0.8865 -3.8401 15 1 9.0299 1.2586 -2.7099 16 6 4.0419 -1.4454 0.1098 17 6 3.4311 -0.6890 1.2935 18 6 3.9575 0.7483 1.3070 19 6 3.4066 1.4735 2.5379 20 8 3.7845 0.7608 3.7174 21 6 3.2783 -0.5741 3.7812 22 6 3.8241 -1.3819 2.6005 23 8 2.0076 -0.6766 1.1655 24 1 -0.3634 -1.0277 0.0024 25 1 -0.3634 0.5158 0.8889 26 1 -0.3634 0.5118 -0.8911 27 1 1.8020 -0.1403 -2.1376 28 1 1.5763 -1.7082 -1.3208 29 1 6.7003 0.8878 -4.6927 30 1 3.7796 -2.5014 0.1742 31 1 5.1262 -1.3348 0.1236 32 1 5.0466 0.7370 1.3479 33 1 3.6313 1.2643 0.4040 34 1 2.3195 1.5220 2.4751 35 1 3.8141 2.4837 2.5773 36 1 2.1896 -0.5527 3.7346 37 1 3.5934 -1.0382 4.7158 38 1 3.4028 -2.3870 2.6209 39 1 4.9104 -1.4408 2.6692 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619242809.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:04 Heat of formation + Delta-G solvation = -149.064900 kcal Electronic energy + Delta-G solvation = -22504.923320 eV Core-core repulsion = 19218.611128 eV Total energy + Delta-G solvation = -3286.312192 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.72639 -39.50290 -38.33302 -35.29805 -35.05312 -34.48400 -32.11653 -31.80734 -29.14431 -28.23965 -26.47718 -24.78504 -23.97195 -22.67476 -21.23093 -20.44193 -18.57095 -17.92358 -17.61942 -17.09498 -16.97834 -16.38465 -16.21804 -15.79365 -15.69988 -15.45125 -15.14092 -14.48274 -14.10378 -13.74358 -13.57382 -13.39633 -13.21770 -13.14311 -13.02175 -12.98262 -12.79309 -12.58172 -12.34164 -12.18118 -12.04661 -11.88695 -11.40205 -11.27168 -10.99792 -10.81225 -10.48773 -9.84031 -9.07537 -8.34551 -6.88698 1.36457 1.37380 1.54577 2.18510 2.40693 2.51931 2.72789 2.97742 3.51838 3.63975 3.72638 3.80624 3.97629 4.04393 4.07580 4.28754 4.28936 4.38508 4.49033 4.57556 4.64890 4.70570 4.73086 4.77850 4.81337 4.87040 4.92712 4.96270 5.09651 5.14491 5.23166 5.29012 5.33398 5.63906 6.04122 6.21863 6.26639 6.28688 6.83344 7.32184 8.39537 8.61696 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019682 B = 0.007285 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.309428 B = 3842.821378 C = 4740.005952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.079 3.921 3 H 0.048 0.952 4 C 0.091 3.909 5 N -0.645 5.645 6 C 0.544 3.456 7 O -0.631 6.631 8 C -0.564 4.564 9 H 0.092 0.908 10 C 0.030 3.970 11 N -0.822 5.822 12 Si 0.992 3.008 13 H -0.244 1.244 14 H -0.269 1.269 15 H -0.268 1.268 16 C 0.100 3.900 17 C 0.108 3.892 18 C -0.171 4.171 19 C 0.075 3.925 20 O -0.396 6.396 21 C 0.065 3.935 22 C -0.133 4.133 23 O -0.368 6.368 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.275 0.725 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.929 -2.082 15.555 16.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.021 3.979 3 H 0.066 0.934 4 C -0.033 4.033 5 N -0.382 5.382 6 C 0.351 3.649 7 O -0.518 6.518 8 C -0.600 4.600 9 H 0.109 0.891 10 C -0.185 4.185 11 N -0.452 5.452 12 Si 0.811 3.189 13 H -0.167 1.167 14 H -0.194 1.194 15 H -0.193 1.193 16 C -0.024 4.024 17 C 0.068 3.932 18 C -0.209 4.209 19 C -0.002 4.002 20 O -0.315 6.315 21 C -0.011 4.011 22 C -0.171 4.171 23 O -0.287 6.287 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.075 0.925 37 H 0.137 0.863 38 H 0.115 0.885 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.185 -1.798 15.093 16.060 hybrid contribution 0.704 0.072 -1.239 1.427 sum -4.481 -1.726 13.854 14.663 Atomic orbital electron populations 1.21684 0.90088 1.03653 1.03461 1.22449 0.96603 0.94582 0.84281 0.93363 1.21983 0.82427 1.00117 0.98788 1.48104 1.05144 1.67665 1.17271 1.18652 0.88141 0.76520 0.81576 1.90544 1.78050 1.54116 1.29130 1.21434 0.89479 1.41568 1.07540 0.89057 1.26960 1.06445 0.91867 0.93195 1.70184 1.38642 1.28501 1.07833 0.85049 0.74929 0.78978 0.79919 1.16695 1.19426 1.19284 1.22242 1.00218 0.96516 0.83411 1.21841 0.81213 0.94616 0.95571 1.22589 1.02058 0.97059 0.99176 1.22441 0.98975 0.95431 0.83338 1.87866 1.75970 1.26890 1.40781 1.22666 0.98319 0.81577 0.98571 1.22169 1.02755 1.00489 0.91710 1.87855 1.20475 1.77329 1.43082 0.91103 0.90317 0.90270 0.92069 0.92351 0.91550 0.91975 0.89095 0.90749 0.92828 0.92773 0.88165 0.92520 0.86335 0.88474 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 9.57 71.98 0.69 -2.45 16 2 C 0.08 2.56 3.02 30.69 0.09 2.65 16 3 H 0.05 1.69 6.20 -2.38 -0.01 1.68 16 4 C 0.09 3.68 5.91 86.35 0.51 4.19 16 5 N -0.65 -30.00 2.61 -822.60 -2.15 -32.15 16 6 C 0.54 31.80 7.62 86.36 0.66 32.46 16 7 O -0.63 -42.65 14.55 -4.34 -0.06 -42.72 16 8 C -0.56 -31.58 8.86 24.83 0.22 -31.36 16 9 H 0.09 4.59 5.73 -2.91 -0.02 4.57 16 10 C 0.03 1.69 5.50 85.30 0.47 2.16 16 11 N -0.82 -50.21 11.86 21.84 0.26 -49.95 16 12 Si 0.99 40.58 29.56 68.60 2.03 42.61 16 13 H -0.24 -9.14 7.11 99.48 0.71 -8.43 16 14 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 15 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 16 C 0.10 3.72 5.22 86.31 0.45 4.17 16 17 C 0.11 3.32 0.69 -10.69 -0.01 3.31 16 18 C -0.17 -5.55 4.46 30.66 0.14 -5.41 16 19 C 0.07 2.01 6.70 72.02 0.48 2.50 16 20 O -0.40 -10.44 10.76 -148.98 -1.60 -12.05 16 21 C 0.06 1.39 6.70 72.02 0.48 1.87 16 22 C -0.13 -3.10 5.15 30.65 0.16 -2.95 16 23 O -0.37 -11.31 8.87 -148.98 -1.32 -12.63 16 24 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 25 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 26 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.06 2.82 7.11 -2.39 -0.02 2.80 16 28 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.27 15.16 8.29 -92.71 -0.77 14.39 16 30 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.09 3.54 5.40 -2.39 -0.01 3.53 16 32 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.05 2.06 6.06 -2.39 -0.01 2.05 16 34 H 0.05 1.42 7.83 -2.39 -0.02 1.40 16 35 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 36 H 0.06 1.22 7.83 -2.39 -0.02 1.20 16 37 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -74.94 304.78 2.54 -72.40 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 1.04 Total: 23.35 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 4.34 Total: 11.14 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -1.89 Total: -82.10 kcal Atomic # 8 Polarization: -64.41 SS G_CDS: -2.99 Total: -67.40 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -74.94 2.54 -72.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619242809.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.660 kcal (2) G-P(sol) polarization free energy of solvation -74.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds