Wall clock time and date at job start Mon Mar 30 2020 01:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47343 * 2 1 4 4 O 1.45200 * 109.46953 * 120.00597 * 2 1 3 5 5 C 1.34229 * 116.99891 * 269.99495 * 4 2 1 6 6 O 1.20829 * 120.00141 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00223 * 180.02562 * 5 4 2 8 8 C 1.53785 * 113.61340 * 279.13862 * 7 5 4 9 9 C 1.53948 * 87.01828 * 220.04410 * 8 7 5 10 10 C 1.53777 * 113.61564 * 181.53467 * 7 5 4 11 11 C 1.50700 * 109.46870 * 240.00409 * 2 1 3 12 12 O 1.21289 * 120.00027 * 256.02749 * 11 2 1 13 13 N 1.34772 * 120.00369 * 76.02851 * 11 2 1 14 14 C 1.46505 * 119.99906 * 5.36369 * 13 11 2 15 15 C 1.46503 * 120.00597 * 185.36047 * 13 11 2 16 16 C 1.50705 * 109.46687 * 89.99844 * 15 13 11 17 17 H 1.07998 * 120.00147 * 0.02562 * 16 15 13 18 18 C 1.37874 * 119.99471 * 180.02562 * 16 15 13 19 19 N 1.31513 * 120.00454 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99744 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47438 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47058 * 120.00266 * 20 18 16 23 23 H 1.48498 * 109.47547 * 240.00146 * 20 18 16 24 24 H 1.09000 * 109.47299 * 66.13206 * 1 2 3 25 25 H 1.08998 * 109.47671 * 186.13405 * 1 2 3 26 26 H 1.08998 * 109.47371 * 306.13725 * 1 2 3 27 27 H 1.08994 * 112.85085 * 50.33264 * 7 5 4 28 28 H 1.08992 * 113.61447 * 334.56922 * 8 7 5 29 29 H 1.08998 * 113.61032 * 105.46530 * 8 7 5 30 30 H 1.08995 * 113.54334 * 270.80660 * 9 8 7 31 31 H 1.09007 * 113.66077 * 139.93412 * 9 8 7 32 32 H 1.09010 * 113.61375 * 254.52699 * 10 7 5 33 33 H 1.09001 * 113.61708 * 25.34279 * 10 7 5 34 34 H 1.09004 * 109.47186 * 84.82054 * 14 13 11 35 35 H 1.08999 * 109.47375 * 204.82383 * 14 13 11 36 36 H 1.08999 * 109.46873 * 324.82474 * 14 13 11 37 37 H 1.08994 * 109.47127 * 210.00234 * 15 13 11 38 38 H 1.09003 * 109.46714 * 330.00615 * 15 13 11 39 39 H 0.97000 * 120.00206 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6846 1.1855 5 6 2.2171 0.0638 2.2811 6 8 1.9974 1.2516 2.2507 7 6 2.7192 -0.5773 3.5491 8 6 1.6170 -1.2707 4.3671 9 6 2.3059 -0.7066 5.6230 10 6 2.8642 0.4071 4.7216 11 6 2.0322 -0.7103 -1.2305 12 8 2.4734 -1.8367 -1.1429 13 7 1.9911 -0.0941 -2.4284 14 6 1.5689 1.3060 -2.5178 15 6 2.3687 -0.8240 -3.6412 16 6 1.1504 -1.4916 -4.2254 17 1 0.1909 -1.3826 -3.7420 18 6 1.2610 -2.2414 -5.3771 19 7 2.4295 -2.3745 -5.9656 20 14 -0.2492 -3.0682 -6.1018 21 1 -1.4326 -2.7654 -5.2572 22 1 -0.4802 -2.5591 -7.4775 23 1 -0.0357 -4.5371 -6.1470 24 1 -0.3634 0.4158 -0.9398 25 1 -0.3634 -1.0217 0.1098 26 1 -0.3634 0.6060 0.8299 27 1 3.6004 -1.1985 3.3891 28 1 0.6218 -0.8614 4.1939 29 1 1.6452 -2.3585 4.3038 30 1 3.0735 -1.3642 6.0310 31 1 1.6090 -0.3473 6.3802 32 1 3.8979 0.6720 4.9441 33 1 2.2116 1.2768 4.6447 34 1 2.4229 1.9559 -2.3267 35 1 1.1774 1.5045 -3.5154 36 1 0.7925 1.4992 -1.7776 37 1 2.7860 -0.1282 -4.3690 38 1 3.1135 -1.5803 -3.3930 39 1 2.5072 -2.9017 -6.7761 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728914323.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:42 Heat of formation + Delta-G solvation = -101.320750 kcal Electronic energy + Delta-G solvation = -20937.633564 eV Core-core repulsion = 17653.391714 eV Total energy + Delta-G solvation = -3284.241850 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.90510 -39.24601 -38.07650 -36.19686 -34.88015 -32.83404 -31.61085 -27.83898 -27.42033 -26.06025 -25.93271 -24.36852 -22.74598 -21.25258 -19.57345 -18.78450 -18.09459 -16.76835 -16.53126 -16.24242 -15.89535 -15.45506 -15.22587 -14.63133 -14.37898 -13.72698 -13.41557 -12.94610 -12.90192 -12.76790 -12.36451 -12.33859 -12.15738 -12.08157 -11.74575 -11.51330 -11.39218 -11.24705 -10.91136 -10.86396 -10.73954 -10.68227 -10.57012 -10.30160 -10.18842 -9.65199 -8.90566 -8.46969 -7.72364 -6.07543 -4.12932 2.15904 2.54549 3.24115 3.28144 3.36073 3.40214 3.90055 4.16394 4.26910 4.41370 4.47543 4.53549 4.82112 4.93589 5.08041 5.12587 5.27073 5.29961 5.38111 5.46338 5.53392 5.61060 5.65151 5.69140 5.72526 5.77259 5.86305 6.08100 6.09768 6.24085 6.47795 6.98496 7.39291 7.46453 7.76255 7.88769 8.18333 8.29095 8.83225 8.98413 9.52341 11.00591 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034878 B = 0.003917 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.613999 B = 7146.094758 C = 7334.550211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.069 3.931 3 H 0.101 0.899 4 O -0.324 6.324 5 C 0.469 3.531 6 O -0.513 6.513 7 C -0.111 4.111 8 C -0.122 4.122 9 C -0.141 4.141 10 C -0.120 4.120 11 C 0.510 3.490 12 O -0.521 6.521 13 N -0.597 5.597 14 C 0.074 3.926 15 C 0.245 3.755 16 C -0.529 4.529 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.893 5.893 20 Si 0.899 3.101 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.282 1.282 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.126 0.874 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.047 0.953 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.036 0.964 38 H 0.046 0.954 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.716 6.949 18.880 20.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.010 3.990 3 H 0.119 0.881 4 O -0.239 6.239 5 C 0.312 3.688 6 O -0.401 6.401 7 C -0.130 4.130 8 C -0.160 4.160 9 C -0.178 4.178 10 C -0.158 4.158 11 C 0.294 3.706 12 O -0.396 6.396 13 N -0.330 5.330 14 C -0.070 4.070 15 C 0.126 3.874 16 C -0.568 4.568 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.532 5.532 20 Si 0.727 3.273 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.208 1.208 24 H 0.105 0.895 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.144 0.856 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.458 6.608 18.690 19.877 hybrid contribution -0.835 -0.264 -0.742 1.148 sum -2.293 6.344 17.948 19.174 Atomic orbital electron populations 1.22147 0.92180 1.04074 1.03706 1.22661 0.96036 0.97338 0.82934 0.88090 1.86658 1.76181 1.41529 1.19520 1.23709 0.74021 0.85791 0.85308 1.90617 1.48622 1.16657 1.84250 1.22603 1.01759 1.00329 0.88354 1.22882 0.97335 1.01211 0.94554 1.22860 1.00403 0.98072 0.96470 1.22923 1.02761 0.97314 0.92760 1.19780 0.80169 0.86838 0.83806 1.90694 1.45168 1.18423 1.85355 1.48081 1.65317 1.11910 1.07730 1.21831 0.98989 0.82670 1.03520 1.19373 0.96713 0.92083 0.79189 1.21470 0.94815 1.31369 1.09154 0.92293 1.24944 0.96286 0.96131 0.96744 1.69942 1.23156 1.40447 1.19672 0.86423 0.82770 0.79377 0.78734 1.19776 1.20931 1.20819 0.89524 0.90662 0.91372 0.85589 0.89532 0.89847 0.89546 0.90661 0.90501 0.88586 0.93445 0.90066 0.92267 0.94627 0.93571 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.19 37.15 0.34 -2.07 16 2 C 0.07 1.19 2.14 -27.89 -0.06 1.13 16 3 H 0.10 1.61 6.31 -51.93 -0.33 1.29 16 4 O -0.32 -5.59 9.47 -45.74 -0.43 -6.02 16 5 C 0.47 6.81 7.46 36.01 0.27 7.07 16 6 O -0.51 -8.16 15.13 -18.75 -0.28 -8.45 16 7 C -0.11 -1.17 4.25 -90.96 -0.39 -1.56 16 8 C -0.12 -1.06 7.64 -25.83 -0.20 -1.25 16 9 C -0.14 -0.97 8.09 -25.83 -0.21 -1.18 16 10 C -0.12 -1.04 7.40 -25.92 -0.19 -1.23 16 11 C 0.51 11.18 6.95 -10.99 -0.08 11.11 16 12 O -0.52 -13.72 16.13 -13.55 -0.22 -13.94 16 13 N -0.60 -12.91 2.86 -182.94 -0.52 -13.43 16 14 C 0.07 1.19 9.79 59.85 0.59 1.77 16 15 C 0.25 6.44 5.18 -5.19 -0.03 6.42 16 16 C -0.53 -14.93 9.39 -34.44 -0.32 -15.25 16 17 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 20 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H 0.09 1.21 6.33 -51.93 -0.33 0.89 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 33 H 0.10 0.93 7.45 -51.93 -0.39 0.54 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 1.30 8.03 -51.93 -0.42 0.88 16 36 H 0.06 0.80 4.92 -51.93 -0.26 0.55 16 37 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 38 H 0.05 1.37 7.36 -51.93 -0.38 0.99 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 328.48 15.07 4.95 4.95 Total: -1.00 -34.13 328.48 -7.03 -41.16 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -5.86 Total: -1.83 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -0.37 Total: 6.61 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.21 Total: -39.17 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.94 Total: -28.40 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.13 -7.03 -41.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728914323.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.165 kcal (2) G-P(sol) polarization free energy of solvation -34.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds