Wall clock time and date at job start Mon Mar 30 2020 01:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47343 * 2 1 4 4 O 1.45200 * 109.46953 * 120.00597 * 2 1 3 5 5 C 1.34229 * 116.99891 * 269.99495 * 4 2 1 6 6 O 1.20829 * 120.00141 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00223 * 180.02562 * 5 4 2 8 8 C 1.53785 * 113.61340 * 279.13862 * 7 5 4 9 9 C 1.53948 * 87.01828 * 220.04410 * 8 7 5 10 10 C 1.53777 * 113.61564 * 181.53467 * 7 5 4 11 11 C 1.50700 * 109.46870 * 240.00409 * 2 1 3 12 12 O 1.21289 * 120.00027 * 256.02749 * 11 2 1 13 13 N 1.34772 * 120.00369 * 76.02851 * 11 2 1 14 14 C 1.46505 * 119.99906 * 5.36369 * 13 11 2 15 15 C 1.46503 * 120.00597 * 185.36047 * 13 11 2 16 16 C 1.50705 * 109.46687 * 89.99844 * 15 13 11 17 17 H 1.07998 * 120.00147 * 0.02562 * 16 15 13 18 18 C 1.37874 * 119.99471 * 180.02562 * 16 15 13 19 19 N 1.31513 * 120.00454 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99744 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47438 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47058 * 120.00266 * 20 18 16 23 23 H 1.48498 * 109.47547 * 240.00146 * 20 18 16 24 24 H 1.09000 * 109.47299 * 66.13206 * 1 2 3 25 25 H 1.08998 * 109.47671 * 186.13405 * 1 2 3 26 26 H 1.08998 * 109.47371 * 306.13725 * 1 2 3 27 27 H 1.08994 * 112.85085 * 50.33264 * 7 5 4 28 28 H 1.08992 * 113.61447 * 334.56922 * 8 7 5 29 29 H 1.08998 * 113.61032 * 105.46530 * 8 7 5 30 30 H 1.08995 * 113.54334 * 270.80660 * 9 8 7 31 31 H 1.09007 * 113.66077 * 139.93412 * 9 8 7 32 32 H 1.09010 * 113.61375 * 254.52699 * 10 7 5 33 33 H 1.09001 * 113.61708 * 25.34279 * 10 7 5 34 34 H 1.09004 * 109.47186 * 84.82054 * 14 13 11 35 35 H 1.08999 * 109.47375 * 204.82383 * 14 13 11 36 36 H 1.08999 * 109.46873 * 324.82474 * 14 13 11 37 37 H 1.08994 * 109.47127 * 210.00234 * 15 13 11 38 38 H 1.09003 * 109.46714 * 330.00615 * 15 13 11 39 39 H 0.97000 * 120.00206 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6846 1.1855 5 6 2.2171 0.0638 2.2811 6 8 1.9974 1.2516 2.2507 7 6 2.7192 -0.5773 3.5491 8 6 1.6170 -1.2707 4.3671 9 6 2.3059 -0.7066 5.6230 10 6 2.8642 0.4071 4.7216 11 6 2.0322 -0.7103 -1.2305 12 8 2.4734 -1.8367 -1.1429 13 7 1.9911 -0.0941 -2.4284 14 6 1.5689 1.3060 -2.5178 15 6 2.3687 -0.8240 -3.6412 16 6 1.1504 -1.4916 -4.2254 17 1 0.1909 -1.3826 -3.7420 18 6 1.2610 -2.2414 -5.3771 19 7 2.4295 -2.3745 -5.9656 20 14 -0.2492 -3.0682 -6.1018 21 1 -1.4326 -2.7654 -5.2572 22 1 -0.4802 -2.5591 -7.4775 23 1 -0.0357 -4.5371 -6.1470 24 1 -0.3634 0.4158 -0.9398 25 1 -0.3634 -1.0217 0.1098 26 1 -0.3634 0.6060 0.8299 27 1 3.6004 -1.1985 3.3891 28 1 0.6218 -0.8614 4.1939 29 1 1.6452 -2.3585 4.3038 30 1 3.0735 -1.3642 6.0310 31 1 1.6090 -0.3473 6.3802 32 1 3.8979 0.6720 4.9441 33 1 2.2116 1.2768 4.6447 34 1 2.4229 1.9559 -2.3267 35 1 1.1774 1.5045 -3.5154 36 1 0.7925 1.4992 -1.7776 37 1 2.7860 -0.1282 -4.3690 38 1 3.1135 -1.5803 -3.3930 39 1 2.5072 -2.9017 -6.7761 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728914323.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:42 Heat of formation + Delta-G solvation = -121.931654 kcal Electronic energy + Delta-G solvation = -20938.527320 eV Core-core repulsion = 17653.391714 eV Total energy + Delta-G solvation = -3285.135606 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.08783 -40.74550 -39.09077 -37.43438 -36.70568 -34.87242 -33.08370 -29.75077 -28.30440 -27.58881 -26.61081 -25.99868 -24.38714 -22.42438 -20.49747 -20.27574 -19.22807 -18.71210 -18.16100 -17.56415 -17.22642 -16.89708 -16.39141 -16.16117 -16.07296 -14.96433 -14.82066 -14.38918 -14.19265 -13.83922 -13.68566 -13.56174 -13.45257 -13.36122 -13.15637 -13.07518 -12.84533 -12.68704 -12.53630 -12.30469 -12.22631 -11.95931 -11.70408 -11.50603 -11.38700 -11.29951 -10.66582 -10.65263 -9.55135 -8.24461 -6.39630 1.02820 1.31763 1.37311 1.39643 1.50623 1.57678 2.31850 2.43132 3.05771 3.36756 3.39653 3.56173 3.62557 3.75895 3.81898 3.86943 4.06848 4.25854 4.51795 4.54896 4.61071 4.65798 4.74947 4.82148 4.83448 4.92048 5.01917 5.04158 5.09053 5.09910 5.18019 5.31867 5.47577 5.50081 5.76417 6.01336 6.50200 6.64236 6.69458 7.16847 7.33851 8.83439 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034878 B = 0.003917 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.613999 B = 7146.094758 C = 7334.550211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.078 3.922 3 H 0.118 0.882 4 O -0.345 6.345 5 C 0.466 3.534 6 O -0.528 6.528 7 C -0.121 4.121 8 C -0.124 4.124 9 C -0.125 4.125 10 C -0.118 4.118 11 C 0.501 3.499 12 O -0.578 6.578 13 N -0.600 5.600 14 C 0.067 3.933 15 C 0.258 3.742 16 C -0.545 4.545 17 H 0.058 0.942 18 C 0.007 3.993 19 N -0.928 5.928 20 Si 0.971 3.029 21 H -0.264 1.264 22 H -0.269 1.269 23 H -0.282 1.282 24 H 0.095 0.905 25 H 0.064 0.936 26 H 0.093 0.907 27 H 0.136 0.864 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.030 0.970 38 H 0.000 1.000 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.219 7.827 20.332 22.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.020 3.980 3 H 0.136 0.864 4 O -0.261 6.261 5 C 0.311 3.689 6 O -0.418 6.418 7 C -0.140 4.140 8 C -0.161 4.161 9 C -0.162 4.162 10 C -0.156 4.156 11 C 0.288 3.712 12 O -0.458 6.458 13 N -0.333 5.333 14 C -0.075 4.075 15 C 0.137 3.863 16 C -0.584 4.584 17 H 0.077 0.923 18 C -0.192 4.192 19 N -0.568 5.568 20 Si 0.795 3.205 21 H -0.189 1.189 22 H -0.194 1.194 23 H -0.208 1.208 24 H 0.114 0.886 25 H 0.083 0.917 26 H 0.111 0.889 27 H 0.153 0.847 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.048 0.952 38 H 0.018 0.982 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.976 7.546 20.159 21.730 hybrid contribution -0.299 -0.495 -1.168 1.303 sum -3.274 7.051 18.992 20.521 Atomic orbital electron populations 1.22146 0.89981 1.04092 1.05222 1.22525 0.97428 0.96903 0.81139 0.86424 1.86682 1.76672 1.42611 1.20092 1.24553 0.73295 0.85722 0.85367 1.90595 1.49447 1.17295 1.84419 1.22954 1.02771 1.01517 0.86734 1.22952 0.96659 1.01488 0.95039 1.22837 1.00569 0.97068 0.95725 1.22948 1.03425 0.97100 0.92104 1.20655 0.79042 0.86409 0.85129 1.90653 1.47663 1.21090 1.86391 1.48076 1.64906 1.13814 1.06472 1.22150 1.00978 0.79604 1.04739 1.18880 0.95272 0.91295 0.80814 1.21732 0.95136 1.31954 1.09537 0.92334 1.25889 0.99524 0.96623 0.97147 1.70060 1.25388 1.41131 1.20200 0.85318 0.78885 0.77897 0.78405 1.18852 1.19431 1.20818 0.88626 0.91691 0.88865 0.84665 0.89960 0.89276 0.87899 0.89343 0.89337 0.89710 0.90988 0.89987 0.89150 0.95168 0.98219 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.35 9.19 71.98 0.66 -3.68 16 2 C 0.08 2.64 2.14 29.85 0.06 2.71 16 3 H 0.12 3.55 6.31 -2.39 -0.02 3.53 16 4 O -0.34 -11.81 9.47 -45.20 -0.43 -12.24 16 5 C 0.47 13.11 7.46 71.24 0.53 13.64 16 6 O -0.53 -16.09 15.13 21.95 0.33 -15.76 16 7 C -0.12 -2.37 4.25 -11.01 -0.05 -2.42 16 8 C -0.12 -1.91 7.64 31.18 0.24 -1.68 16 9 C -0.12 -1.36 8.09 31.18 0.25 -1.11 16 10 C -0.12 -1.80 7.40 31.12 0.23 -1.57 16 11 C 0.50 22.36 6.95 87.66 0.61 22.97 16 12 O -0.58 -31.85 16.13 15.20 0.25 -31.60 16 13 N -0.60 -26.24 2.86 -851.10 -2.43 -28.67 16 14 C 0.07 2.05 9.79 127.77 1.25 3.30 16 15 C 0.26 14.08 5.18 85.63 0.44 14.52 16 16 C -0.55 -31.27 9.39 25.60 0.24 -31.03 16 17 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 18 C 0.01 0.42 5.46 84.65 0.46 0.88 16 19 N -0.93 -56.09 13.29 21.45 0.28 -55.81 16 20 Si 0.97 44.54 29.54 68.60 2.03 46.57 16 21 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 23 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 24 H 0.10 2.45 6.33 -2.39 -0.02 2.43 16 25 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.09 2.12 8.14 -2.39 -0.02 2.11 16 27 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.08 1.34 8.09 -2.39 -0.02 1.32 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.08 1.50 7.45 -2.39 -0.02 1.48 16 34 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.08 2.51 8.03 -2.39 -0.02 2.49 16 36 H 0.09 2.20 4.92 -2.39 -0.01 2.19 16 37 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 38 H 0.00 -0.02 7.36 -2.39 -0.02 -0.04 16 39 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -76.28 328.48 6.00 -70.27 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 1.04 Total: 10.71 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 4.94 Total: 16.53 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -2.15 Total: -84.48 kcal Atomic # 8 Polarization: -59.75 SS G_CDS: 0.15 Total: -59.60 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -76.28 6.00 -70.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728914323.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.658 kcal (2) G-P(sol) polarization free energy of solvation -76.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds