Wall clock time and date at job start Mon Mar 30 2020 01:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46969 * 2 1 4 4 O 1.45202 * 109.46662 * 240.00181 * 2 1 3 5 5 C 1.34230 * 116.99836 * 90.00373 * 4 2 1 6 6 O 1.20833 * 119.99930 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00262 * 180.27336 * 5 4 2 8 8 C 1.53779 * 113.61502 * 278.86034 * 7 5 4 9 9 C 1.53954 * 87.02157 * 220.04718 * 8 7 5 10 10 C 1.53777 * 87.11096 * 25.35911 * 9 8 7 11 11 C 1.50695 * 109.47065 * 120.00304 * 2 1 3 12 12 O 1.21283 * 119.99638 * 120.00377 * 11 2 1 13 13 N 1.34774 * 120.00295 * 299.99461 * 11 2 1 14 14 C 1.46500 * 120.00050 * 0.02562 * 13 11 2 15 15 C 1.46499 * 120.00204 * 179.97438 * 13 11 2 16 16 C 1.50700 * 109.46860 * 90.00718 * 15 13 11 17 17 H 1.08004 * 120.00164 * 359.97438 * 16 15 13 18 18 C 1.37880 * 120.00039 * 180.02562 * 16 15 13 19 19 N 1.31517 * 119.99827 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00007 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47101 * 89.99651 * 20 18 16 22 22 H 1.48498 * 109.47079 * 210.00074 * 20 18 16 23 23 H 1.48501 * 109.47159 * 329.99662 * 20 18 16 24 24 H 1.09000 * 109.46969 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47394 * 299.99340 * 1 2 3 26 26 H 1.08994 * 109.47916 * 59.99805 * 1 2 3 27 27 H 1.09003 * 112.84637 * 50.05272 * 7 5 4 28 28 H 1.09009 * 113.61146 * 334.56360 * 8 7 5 29 29 H 1.08998 * 113.61914 * 105.46309 * 8 7 5 30 30 H 1.09003 * 113.53143 * 270.81128 * 9 8 7 31 31 H 1.08996 * 113.66888 * 139.93291 * 9 8 7 32 32 H 1.09002 * 113.61446 * 220.09451 * 10 9 8 33 33 H 1.09004 * 113.69044 * 89.20207 * 10 9 8 34 34 H 1.09004 * 109.47162 * 89.99077 * 14 13 11 35 35 H 1.08996 * 109.47447 * 209.99501 * 14 13 11 36 36 H 1.08999 * 109.46869 * 329.99698 * 14 13 11 37 37 H 1.08999 * 109.47222 * 210.00522 * 15 13 11 38 38 H 1.08995 * 109.47419 * 330.00898 * 15 13 11 39 39 H 0.97000 * 119.99581 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6845 -1.1856 5 6 2.2170 0.0641 -2.2811 6 8 1.9973 1.2519 -2.2505 7 6 2.7127 -0.5779 -3.5512 8 6 4.2332 -0.8070 -3.5730 9 6 4.1968 -0.3710 -5.0490 10 6 2.9230 0.4182 -4.7037 11 6 2.0323 -0.7104 1.2304 12 8 2.7296 -1.6965 1.1190 13 7 1.7068 -0.2500 2.4545 14 6 0.8642 0.9408 2.5891 15 6 2.1947 -0.9411 3.6506 16 6 3.5224 -0.3581 4.0611 17 1 3.9593 0.4464 3.4880 18 6 4.1799 -0.8524 5.1676 19 7 3.6481 -1.8324 5.8652 20 14 5.8260 -0.1303 5.6759 21 1 5.6029 0.9946 6.6193 22 1 6.6426 -1.1783 6.3393 23 1 6.5411 0.3668 4.4731 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3635 0.5138 -0.8899 27 1 2.1345 -1.4575 -3.8344 28 1 4.7870 -0.1234 -2.9293 29 1 4.5199 -1.8491 -3.4314 30 1 4.0256 -1.1948 -5.7420 31 1 5.0365 0.2603 -5.3396 32 1 2.1535 0.3638 -5.4738 33 1 3.1165 1.4377 -4.3699 34 1 -0.1837 0.6426 2.6225 35 1 1.1219 1.4663 3.5086 36 1 1.0274 1.5996 1.7361 37 1 1.4767 -0.8155 4.4610 38 1 2.3155 -2.0023 3.4333 39 1 4.1105 -2.1799 6.6438 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728914324.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:44 Heat of formation + Delta-G solvation = -97.321726 kcal Electronic energy + Delta-G solvation = -20996.235964 eV Core-core repulsion = 17712.167525 eV Total energy + Delta-G solvation = -3284.068439 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.88422 -39.26300 -38.05104 -36.16888 -34.94538 -32.91466 -31.56067 -27.80086 -27.32573 -26.20732 -25.87488 -24.32428 -22.73535 -21.21680 -19.57326 -18.85179 -18.03836 -16.78512 -16.53846 -16.15561 -15.96225 -15.36929 -15.25322 -14.59400 -14.27566 -13.74204 -13.59364 -13.08623 -12.72241 -12.67193 -12.46637 -12.35949 -12.17789 -12.07129 -11.64522 -11.52179 -11.33375 -11.15108 -10.92367 -10.81125 -10.68531 -10.65678 -10.56670 -10.26716 -10.17691 -9.66008 -8.89885 -8.45796 -7.73224 -6.06795 -4.11778 2.19309 2.55316 3.26586 3.29535 3.36176 3.41547 3.89518 4.20425 4.32109 4.42830 4.53697 4.57459 4.79783 4.91770 5.05081 5.11864 5.27883 5.30755 5.43399 5.51195 5.54817 5.64992 5.67020 5.67458 5.73296 5.80203 5.84281 5.99971 6.14890 6.21675 6.49388 6.97909 7.38324 7.45986 7.78325 7.89511 8.19277 8.28930 8.84190 8.99107 9.53361 11.01365 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022470 B = 0.004518 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.824834 B = 6195.723167 C = 6916.257184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.068 3.932 3 H 0.105 0.895 4 O -0.323 6.323 5 C 0.469 3.531 6 O -0.513 6.513 7 C -0.110 4.110 8 C -0.123 4.123 9 C -0.141 4.141 10 C -0.120 4.120 11 C 0.508 3.492 12 O -0.520 6.520 13 N -0.596 5.596 14 C 0.076 3.924 15 C 0.247 3.753 16 C -0.529 4.529 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.894 5.894 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.284 1.284 23 H -0.274 1.274 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.125 0.875 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.036 0.964 38 H 0.046 0.954 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.410 4.707 -17.874 19.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.010 3.990 3 H 0.122 0.878 4 O -0.238 6.238 5 C 0.312 3.688 6 O -0.401 6.401 7 C -0.129 4.129 8 C -0.160 4.160 9 C -0.178 4.178 10 C -0.157 4.157 11 C 0.293 3.707 12 O -0.395 6.395 13 N -0.330 5.330 14 C -0.068 4.068 15 C 0.128 3.872 16 C -0.568 4.568 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.533 5.533 20 Si 0.726 3.274 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.199 1.199 24 H 0.090 0.910 25 H 0.111 0.889 26 H 0.086 0.914 27 H 0.143 0.857 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.080 4.397 -17.696 18.928 hybrid contribution 0.761 0.565 0.550 1.096 sum -4.319 4.962 -17.145 18.364 Atomic orbital electron populations 1.22390 0.92513 1.04034 1.04233 1.22603 0.95651 0.97640 0.83128 0.87778 1.86636 1.76206 1.41446 1.19532 1.23709 0.73638 0.85908 0.85513 1.90620 1.48355 1.16726 1.84447 1.22592 0.99078 1.01219 0.90059 1.22895 0.92475 1.03392 0.97268 1.22865 0.98295 1.00280 0.96387 1.22921 0.98119 0.98916 0.95752 1.19789 0.81696 0.85397 0.83845 1.90702 1.36923 1.26010 1.85882 1.48059 1.49856 1.28368 1.06686 1.21882 0.93942 0.88063 1.02901 1.19348 0.94365 0.93751 0.79730 1.21433 1.04848 1.19197 1.11332 0.92432 1.24932 0.97986 0.94893 0.96212 1.69932 1.39087 1.25958 1.18319 0.86482 0.83565 0.78696 0.78614 1.20584 1.21013 1.19893 0.91038 0.88904 0.91441 0.85730 0.89383 0.89759 0.89597 0.90629 0.90574 0.88582 0.93023 0.90321 0.92305 0.94600 0.93642 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 9.18 37.16 0.34 -2.00 16 2 C 0.07 1.18 2.18 -27.89 -0.06 1.12 16 3 H 0.10 1.75 6.42 -51.93 -0.33 1.41 16 4 O -0.32 -5.63 9.41 -45.90 -0.43 -6.06 16 5 C 0.47 7.01 7.46 36.00 0.27 7.28 16 6 O -0.51 -8.43 15.13 -18.76 -0.28 -8.72 16 7 C -0.11 -1.20 4.25 -90.96 -0.39 -1.59 16 8 C -0.12 -1.25 7.64 -25.83 -0.20 -1.44 16 9 C -0.14 -1.09 8.09 -25.83 -0.21 -1.29 16 10 C -0.12 -1.08 7.40 -25.92 -0.19 -1.27 16 11 C 0.51 11.13 7.15 -10.99 -0.08 11.05 16 12 O -0.52 -13.73 16.08 -14.11 -0.23 -13.96 16 13 N -0.60 -12.78 2.86 -182.96 -0.52 -13.31 16 14 C 0.08 1.19 8.80 59.85 0.53 1.72 16 15 C 0.25 6.47 5.16 -5.19 -0.03 6.44 16 16 C -0.53 -15.11 9.39 -34.44 -0.32 -15.43 16 17 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 18 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 20 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 24 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.09 1.09 4.53 -51.93 -0.24 0.86 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.09 1.00 8.09 -51.92 -0.42 0.58 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 1.00 7.45 -51.93 -0.39 0.61 16 34 H 0.05 0.67 6.95 -51.93 -0.36 0.31 16 35 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 36 H 0.06 0.79 6.01 -51.93 -0.31 0.48 16 37 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 38 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 325.92 15.07 4.91 4.91 Total: -1.00 -34.48 325.92 -7.05 -41.53 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -5.78 Total: -1.77 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -0.44 Total: 6.25 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.21 Total: -39.12 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.94 Total: -28.74 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.48 -7.05 -41.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728914324.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.789 kcal (2) G-P(sol) polarization free energy of solvation -34.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds