Wall clock time and date at job start Mon Mar 30 2020 01:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46969 * 2 1 4 4 O 1.45202 * 109.46662 * 240.00181 * 2 1 3 5 5 C 1.34230 * 116.99836 * 90.00373 * 4 2 1 6 6 O 1.20833 * 119.99930 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00262 * 180.27336 * 5 4 2 8 8 C 1.53779 * 113.61502 * 278.86034 * 7 5 4 9 9 C 1.53954 * 87.02157 * 220.04718 * 8 7 5 10 10 C 1.53777 * 87.11096 * 25.35911 * 9 8 7 11 11 C 1.50695 * 109.47065 * 120.00304 * 2 1 3 12 12 O 1.21283 * 119.99638 * 120.00377 * 11 2 1 13 13 N 1.34774 * 120.00295 * 299.99461 * 11 2 1 14 14 C 1.46500 * 120.00050 * 0.02562 * 13 11 2 15 15 C 1.46499 * 120.00204 * 179.97438 * 13 11 2 16 16 C 1.50700 * 109.46860 * 90.00718 * 15 13 11 17 17 H 1.08004 * 120.00164 * 359.97438 * 16 15 13 18 18 C 1.37880 * 120.00039 * 180.02562 * 16 15 13 19 19 N 1.31517 * 119.99827 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00007 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47101 * 89.99651 * 20 18 16 22 22 H 1.48498 * 109.47079 * 210.00074 * 20 18 16 23 23 H 1.48501 * 109.47159 * 329.99662 * 20 18 16 24 24 H 1.09000 * 109.46969 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47394 * 299.99340 * 1 2 3 26 26 H 1.08994 * 109.47916 * 59.99805 * 1 2 3 27 27 H 1.09003 * 112.84637 * 50.05272 * 7 5 4 28 28 H 1.09009 * 113.61146 * 334.56360 * 8 7 5 29 29 H 1.08998 * 113.61914 * 105.46309 * 8 7 5 30 30 H 1.09003 * 113.53143 * 270.81128 * 9 8 7 31 31 H 1.08996 * 113.66888 * 139.93291 * 9 8 7 32 32 H 1.09002 * 113.61446 * 220.09451 * 10 9 8 33 33 H 1.09004 * 113.69044 * 89.20207 * 10 9 8 34 34 H 1.09004 * 109.47162 * 89.99077 * 14 13 11 35 35 H 1.08996 * 109.47447 * 209.99501 * 14 13 11 36 36 H 1.08999 * 109.46869 * 329.99698 * 14 13 11 37 37 H 1.08999 * 109.47222 * 210.00522 * 15 13 11 38 38 H 1.08995 * 109.47419 * 330.00898 * 15 13 11 39 39 H 0.97000 * 119.99581 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6845 -1.1856 5 6 2.2170 0.0641 -2.2811 6 8 1.9973 1.2519 -2.2505 7 6 2.7127 -0.5779 -3.5512 8 6 4.2332 -0.8070 -3.5730 9 6 4.1968 -0.3710 -5.0490 10 6 2.9230 0.4182 -4.7037 11 6 2.0323 -0.7104 1.2304 12 8 2.7296 -1.6965 1.1190 13 7 1.7068 -0.2500 2.4545 14 6 0.8642 0.9408 2.5891 15 6 2.1947 -0.9411 3.6506 16 6 3.5224 -0.3581 4.0611 17 1 3.9593 0.4464 3.4880 18 6 4.1799 -0.8524 5.1676 19 7 3.6481 -1.8324 5.8652 20 14 5.8260 -0.1303 5.6759 21 1 5.6029 0.9946 6.6193 22 1 6.6426 -1.1783 6.3393 23 1 6.5411 0.3668 4.4731 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3635 0.5138 -0.8899 27 1 2.1345 -1.4575 -3.8344 28 1 4.7870 -0.1234 -2.9293 29 1 4.5199 -1.8491 -3.4314 30 1 4.0256 -1.1948 -5.7420 31 1 5.0365 0.2603 -5.3396 32 1 2.1535 0.3638 -5.4738 33 1 3.1165 1.4377 -4.3699 34 1 -0.1837 0.6426 2.6225 35 1 1.1219 1.4663 3.5086 36 1 1.0274 1.5996 1.7361 37 1 1.4767 -0.8155 4.4610 38 1 2.3155 -2.0023 3.4333 39 1 4.1105 -2.1799 6.6438 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728914324.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:44 Heat of formation + Delta-G solvation = -118.526060 kcal Electronic energy + Delta-G solvation = -20997.155453 eV Core-core repulsion = 17712.167525 eV Total energy + Delta-G solvation = -3284.987928 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.09512 -40.76629 -39.10232 -37.43328 -36.75179 -34.94578 -33.05636 -29.63732 -28.32006 -27.70407 -26.62517 -25.93958 -24.38001 -22.42163 -20.53864 -20.35287 -19.20739 -18.70340 -18.19219 -17.48399 -17.31537 -16.94247 -16.46212 -16.17790 -15.82742 -14.99885 -14.89865 -14.47715 -14.25390 -13.82804 -13.68992 -13.56410 -13.48194 -13.34866 -13.19499 -12.97366 -12.82729 -12.61912 -12.45032 -12.32393 -12.23261 -11.93535 -11.74618 -11.52430 -11.40842 -11.31266 -10.66594 -10.64243 -9.54763 -8.25881 -6.40693 1.03303 1.31353 1.35206 1.38061 1.48058 1.58816 2.30615 2.42770 3.04092 3.37137 3.38619 3.53343 3.62092 3.75946 3.82719 3.85314 4.05031 4.29649 4.50902 4.59183 4.62566 4.66539 4.72214 4.80251 4.84730 4.92991 4.99580 5.06817 5.07185 5.08344 5.17218 5.32095 5.45781 5.48743 5.75687 6.01093 6.50529 6.64089 6.67806 7.17509 7.33297 8.81536 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022470 B = 0.004518 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.824834 B = 6195.723167 C = 6916.257184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.076 3.924 3 H 0.111 0.889 4 O -0.344 6.344 5 C 0.465 3.535 6 O -0.531 6.531 7 C -0.115 4.115 8 C -0.133 4.133 9 C -0.123 4.123 10 C -0.116 4.116 11 C 0.499 3.501 12 O -0.579 6.579 13 N -0.599 5.599 14 C 0.068 3.932 15 C 0.260 3.740 16 C -0.549 4.549 17 H 0.051 0.949 18 C 0.011 3.989 19 N -0.925 5.925 20 Si 0.967 3.033 21 H -0.261 1.261 22 H -0.279 1.279 23 H -0.276 1.276 24 H 0.068 0.932 25 H 0.112 0.888 26 H 0.086 0.914 27 H 0.147 0.853 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.034 0.966 38 H 0.001 0.999 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.787 6.092 -19.345 21.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.018 3.982 3 H 0.128 0.872 4 O -0.260 6.260 5 C 0.310 3.690 6 O -0.420 6.420 7 C -0.134 4.134 8 C -0.171 4.171 9 C -0.161 4.161 10 C -0.153 4.153 11 C 0.286 3.714 12 O -0.459 6.459 13 N -0.331 5.331 14 C -0.074 4.074 15 C 0.139 3.861 16 C -0.587 4.587 17 H 0.069 0.931 18 C -0.188 4.188 19 N -0.565 5.565 20 Si 0.792 3.208 21 H -0.186 1.186 22 H -0.204 1.204 23 H -0.201 1.201 24 H 0.087 0.913 25 H 0.130 0.870 26 H 0.105 0.895 27 H 0.165 0.835 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.127 0.873 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.052 0.948 38 H 0.019 0.981 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.498 5.830 -19.173 20.781 hybrid contribution 0.857 0.125 1.004 1.326 sum -4.640 5.955 -18.169 19.675 Atomic orbital electron populations 1.22393 0.89202 1.04523 1.06110 1.22509 0.97920 0.96540 0.81208 0.87178 1.86655 1.76722 1.42493 1.20116 1.24578 0.72853 0.85856 0.85726 1.90598 1.49241 1.17473 1.84694 1.22950 0.99410 1.02553 0.88455 1.22967 0.91806 1.03205 0.99124 1.22849 0.97813 1.00656 0.94735 1.22925 0.99460 0.97659 0.95257 1.20678 0.80679 0.84858 0.85219 1.90659 1.39599 1.28760 1.86894 1.48044 1.50113 1.29552 1.05409 1.22244 0.94766 0.86291 1.04085 1.18850 0.93984 0.91784 0.81451 1.21690 1.06038 1.19340 1.11681 0.93110 1.25828 1.01754 0.95147 0.96118 1.70039 1.40716 1.26958 1.18761 0.85421 0.78687 0.78444 0.78289 1.18592 1.20390 1.20122 0.91283 0.86961 0.89512 0.83502 0.91367 0.89483 0.87275 0.89794 0.88437 0.90250 0.89500 0.90598 0.89494 0.94759 0.98095 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 9.18 71.98 0.66 -3.41 16 2 C 0.08 2.59 2.18 29.85 0.07 2.65 16 3 H 0.11 3.57 6.42 -2.39 -0.02 3.56 16 4 O -0.34 -11.98 9.41 -45.06 -0.42 -12.40 16 5 C 0.47 13.59 7.46 71.23 0.53 14.12 16 6 O -0.53 -16.96 15.13 21.94 0.33 -16.63 16 7 C -0.11 -2.34 4.25 -11.02 -0.05 -2.38 16 8 C -0.13 -2.60 7.64 31.18 0.24 -2.36 16 9 C -0.12 -1.59 8.09 31.18 0.25 -1.34 16 10 C -0.12 -1.84 7.40 31.12 0.23 -1.61 16 11 C 0.50 22.30 7.15 87.66 0.63 22.93 16 12 O -0.58 -32.13 16.08 15.76 0.25 -31.88 16 13 N -0.60 -25.95 2.86 -851.15 -2.43 -28.38 16 14 C 0.07 2.00 8.80 127.77 1.12 3.13 16 15 C 0.26 14.13 5.16 85.63 0.44 14.57 16 16 C -0.55 -32.07 9.39 25.60 0.24 -31.83 16 17 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 18 C 0.01 0.64 5.46 84.66 0.46 1.10 16 19 N -0.93 -55.92 13.29 21.45 0.28 -55.63 16 20 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 21 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 24 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.11 2.28 4.53 -2.39 -0.01 2.27 16 26 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.15 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.07 1.58 8.09 -2.38 -0.02 1.56 16 29 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.10 1.14 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.55 7.45 -2.38 -0.02 1.53 16 34 H 0.09 1.99 6.95 -2.38 -0.02 1.98 16 35 H 0.08 2.31 8.07 -2.39 -0.02 2.30 16 36 H 0.09 2.10 6.01 -2.39 -0.01 2.08 16 37 H 0.03 1.85 8.07 -2.39 -0.02 1.83 16 38 H 0.00 0.06 7.42 -2.39 -0.02 0.04 16 39 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -77.93 325.92 5.91 -72.03 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 1.04 Total: 10.07 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: 4.83 Total: 15.57 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -2.15 Total: -84.02 kcal Atomic # 8 Polarization: -61.07 SS G_CDS: 0.16 Total: -60.91 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -77.93 5.91 -72.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728914324.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.500 kcal (2) G-P(sol) polarization free energy of solvation -77.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds