Wall clock time and date at job start Mon Mar 30 2020 01:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47286 * 2 1 4 4 O 1.45202 * 109.47027 * 239.99857 * 2 1 3 5 5 C 1.34234 * 116.99552 * 90.00295 * 4 2 1 6 6 O 1.20829 * 120.00419 * 0.02562 * 5 4 2 7 7 C 1.50706 * 119.99819 * 179.97438 * 5 4 2 8 8 H 1.08997 * 115.54995 * 325.67289 * 7 5 4 9 9 C 1.53001 * 117.49589 * 111.38264 * 7 5 4 10 10 C 1.52991 * 60.00062 * 107.48758 * 9 7 5 11 11 H 1.09000 * 117.51862 * 252.51403 * 10 9 7 12 12 C 1.53006 * 117.50107 * 107.48790 * 10 9 7 13 13 C 1.50694 * 109.46989 * 120.00526 * 2 1 3 14 14 O 1.21280 * 120.00221 * 105.65805 * 13 2 1 15 15 N 1.34775 * 119.99936 * 285.65881 * 13 2 1 16 16 C 1.46505 * 120.00179 * 183.79967 * 15 13 2 17 17 C 1.46499 * 120.00140 * 3.80133 * 15 13 2 18 18 C 1.50695 * 109.47286 * 95.29252 * 17 15 13 19 19 H 1.08003 * 120.00117 * 0.02562 * 18 17 15 20 20 C 1.37880 * 119.99994 * 179.97438 * 18 17 15 21 21 N 1.31513 * 119.99958 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99903 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47069 * 89.99901 * 22 20 18 24 24 H 1.48501 * 109.46738 * 209.99367 * 22 20 18 25 25 H 1.48498 * 109.47060 * 329.99712 * 22 20 18 26 26 H 1.09005 * 109.46597 * 61.82768 * 1 2 3 27 27 H 1.09004 * 109.47287 * 181.82462 * 1 2 3 28 28 H 1.08997 * 109.47230 * 301.83079 * 1 2 3 29 29 H 1.09006 * 117.49443 * 214.98115 * 9 7 5 30 30 H 1.08997 * 117.50136 * 359.97438 * 9 7 5 31 31 H 1.08994 * 109.46902 * 351.37539 * 12 10 9 32 32 H 1.09003 * 109.47057 * 111.37428 * 12 10 9 33 33 H 1.08997 * 109.47195 * 231.37503 * 12 10 9 34 34 H 1.09004 * 109.46790 * 273.86851 * 16 15 13 35 35 H 1.09002 * 109.47177 * 33.86545 * 16 15 13 36 36 H 1.09000 * 109.47240 * 153.86938 * 16 15 13 37 37 H 1.08995 * 109.47234 * 215.29793 * 17 15 13 38 38 H 1.09000 * 109.46717 * 335.29499 * 17 15 13 39 39 H 0.97006 * 119.99672 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2171 0.0641 -2.2811 6 8 1.9983 1.2520 -2.2503 7 6 2.7193 -0.5770 -3.5492 8 1 3.4131 -1.4067 -3.4138 9 6 1.7547 -0.6483 -4.7347 10 6 2.9308 0.3297 -4.7633 11 1 2.7071 1.3899 -4.6448 12 6 4.0997 0.0021 -5.6947 13 6 2.0323 -0.7105 1.2304 14 8 2.5017 -1.8250 1.1379 15 7 1.9599 -0.1075 2.4335 16 6 2.5233 -0.7628 3.6165 17 6 1.3177 1.2033 2.5584 18 6 -0.1200 1.0210 2.9718 19 1 -0.5157 0.0281 3.1264 20 6 -0.9299 2.1219 3.1536 21 7 -2.1847 1.9628 3.5139 22 14 -0.2453 3.8394 2.8868 23 1 -0.4442 4.2370 1.4699 24 1 -0.9529 4.7975 3.7738 25 1 1.2052 3.8490 3.2047 26 1 -0.3633 0.4852 -0.9060 27 1 -0.3634 -1.0272 0.0327 28 1 -0.3633 0.5420 0.8731 29 1 1.8136 -1.5254 -5.3793 30 1 0.7567 -0.2320 -4.5973 31 1 3.9690 -1.0001 -6.1029 32 1 4.1287 0.7254 -6.5096 33 1 5.0339 0.0475 -5.1351 34 1 1.7822 -1.4369 4.0460 35 1 3.4085 -1.3308 3.3302 36 1 2.7985 -0.0082 4.3534 37 1 1.8401 1.7936 3.3111 38 1 1.3573 1.7201 1.5996 39 1 -2.7546 2.7374 3.6414 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728921258.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:19 Heat of formation + Delta-G solvation = -95.311044 kcal Electronic energy + Delta-G solvation = -21155.389614 eV Core-core repulsion = 17871.408364 eV Total energy + Delta-G solvation = -3283.981250 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.65658 -39.22195 -37.57426 -35.93553 -35.21589 -32.63663 -31.55668 -29.08083 -28.40177 -26.45220 -25.21082 -23.21393 -22.53099 -21.19525 -20.03832 -18.72258 -17.98668 -17.15149 -16.64119 -16.13838 -15.74785 -15.33881 -14.83245 -14.42111 -14.09163 -13.88933 -13.41575 -13.21951 -12.97705 -12.70152 -12.47479 -12.29642 -12.11294 -12.02293 -11.70520 -11.65317 -11.57271 -11.00494 -10.93633 -10.77459 -10.64622 -10.43150 -10.35260 -10.31434 -10.24287 -9.70109 -9.12265 -8.78799 -7.88057 -6.31102 -4.32973 2.18398 2.56107 3.13297 3.14947 3.22034 3.24866 3.54344 3.82129 4.19870 4.46774 4.52615 4.63396 4.95467 4.99342 5.04406 5.05482 5.33171 5.40829 5.47502 5.49667 5.52215 5.73874 5.78419 5.84618 6.04140 6.05174 6.18917 6.28776 6.31699 6.32829 6.54006 6.68307 7.00959 7.17350 7.33825 7.88272 7.96646 8.29215 8.68993 8.77346 9.26658 10.80352 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020740 B = 0.005242 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.727101 B = 5340.656738 C = 6079.531990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.078 3.922 3 H 0.105 0.895 4 O -0.329 6.329 5 C 0.488 3.512 6 O -0.509 6.509 7 C -0.165 4.165 8 H 0.136 0.864 9 C -0.144 4.144 10 C -0.123 4.123 11 H 0.119 0.881 12 C -0.124 4.124 13 C 0.522 3.478 14 O -0.549 6.549 15 N -0.590 5.590 16 C 0.099 3.901 17 C 0.200 3.800 18 C -0.545 4.545 19 H 0.083 0.917 20 C 0.080 3.920 21 N -0.883 5.883 22 Si 0.867 3.133 23 H -0.269 1.269 24 H -0.281 1.281 25 H -0.263 1.263 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.134 0.866 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.038 0.962 38 H 0.032 0.968 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.431 -2.291 -13.031 16.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.021 3.979 3 H 0.122 0.878 4 O -0.244 6.244 5 C 0.332 3.668 6 O -0.398 6.398 7 C -0.184 4.184 8 H 0.153 0.847 9 C -0.181 4.181 10 C -0.141 4.141 11 H 0.137 0.863 12 C -0.181 4.181 13 C 0.308 3.692 14 O -0.428 6.428 15 N -0.321 5.321 16 C -0.044 4.044 17 C 0.079 3.921 18 C -0.583 4.583 19 H 0.101 0.899 20 C -0.125 4.125 21 N -0.520 5.520 22 Si 0.693 3.307 23 H -0.195 1.195 24 H -0.207 1.207 25 H -0.188 1.188 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.152 0.848 29 H 0.128 0.872 30 H 0.121 0.879 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.423 -2.414 -12.949 16.195 hybrid contribution 0.010 1.113 0.179 1.128 sum 9.433 -1.300 -12.769 15.929 Atomic orbital electron populations 1.22571 0.90561 1.04246 1.06530 1.22598 0.97247 0.96689 0.81383 0.87768 1.86548 1.76363 1.41731 1.19743 1.22593 0.74054 0.85347 0.84854 1.90653 1.48337 1.16526 1.84246 1.21815 1.06091 1.04607 0.85880 0.84656 1.23194 0.95564 1.01916 0.97468 1.22513 0.97943 0.98050 0.95569 0.86261 1.21412 0.96517 1.01797 0.98336 1.19867 0.78911 0.86064 0.84368 1.90632 1.46771 1.19003 1.86415 1.47715 1.56476 1.21544 1.06413 1.21473 0.98102 0.97752 0.87078 1.20027 0.94485 0.79880 0.97743 1.21298 0.92940 0.95848 1.48174 0.89896 1.24875 0.94642 0.98969 0.93995 1.69884 1.05726 1.31055 1.45316 0.86981 0.79938 0.84632 0.79181 1.19468 1.20653 1.18762 0.92224 0.91870 0.84808 0.87196 0.87906 0.92117 0.91496 0.91742 0.92778 0.91957 0.91208 0.94433 0.95013 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.67 9.32 37.16 0.35 -3.32 16 2 C 0.08 1.58 2.14 -27.89 -0.06 1.52 16 3 H 0.10 2.09 5.78 -51.93 -0.30 1.79 16 4 O -0.33 -6.26 9.46 -45.79 -0.43 -6.69 16 5 C 0.49 8.18 7.71 36.01 0.28 8.45 16 6 O -0.51 -9.58 15.48 -18.75 -0.29 -9.87 16 7 C -0.16 -2.00 6.02 -91.77 -0.55 -2.55 16 8 H 0.14 1.44 8.14 -51.93 -0.42 1.01 16 9 C -0.14 -1.40 9.88 -26.73 -0.26 -1.66 16 10 C -0.12 -1.23 5.92 -90.62 -0.54 -1.76 16 11 H 0.12 1.35 7.67 -51.93 -0.40 0.95 16 12 C -0.12 -0.91 10.19 37.16 0.38 -0.53 16 13 C 0.52 11.32 7.00 -10.99 -0.08 11.24 16 14 O -0.55 -12.95 16.25 -13.66 -0.22 -13.18 16 15 N -0.59 -12.35 2.86 -182.96 -0.52 -12.87 16 16 C 0.10 1.77 10.40 59.85 0.62 2.39 16 17 C 0.20 4.39 3.78 -5.20 -0.02 4.37 16 18 C -0.54 -13.87 7.38 -34.44 -0.25 -14.12 16 19 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 20 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 21 N -0.88 -24.90 13.96 55.43 0.77 -24.12 16 22 Si 0.87 19.52 27.47 -169.99 -4.67 14.85 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 25 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.13 3.02 4.35 -51.93 -0.23 2.79 16 29 H 0.11 0.80 8.05 -51.93 -0.42 0.38 16 30 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 1.05 7.60 -51.93 -0.39 0.66 16 36 H 0.07 1.10 7.90 -51.93 -0.41 0.69 16 37 H 0.04 0.80 7.01 -51.93 -0.36 0.44 16 38 H 0.03 0.69 5.06 -51.93 -0.26 0.43 16 39 H 0.27 7.11 8.31 -40.82 -0.34 6.78 16 LS Contribution 326.11 15.07 4.91 4.91 Total: -1.00 -30.79 326.11 -6.42 -37.21 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.73 Total: 3.72 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -0.24 Total: 6.03 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.25 Total: -36.99 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.95 Total: -29.73 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.67 Total: 14.85 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.79 -6.42 -37.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728921258.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.103 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds