Wall clock time and date at job start Mon Mar 30 2020 01:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47286 * 2 1 4 4 O 1.45202 * 109.47027 * 239.99857 * 2 1 3 5 5 C 1.34234 * 116.99552 * 90.00295 * 4 2 1 6 6 O 1.20829 * 120.00419 * 0.02562 * 5 4 2 7 7 C 1.50706 * 119.99819 * 179.97438 * 5 4 2 8 8 H 1.08997 * 115.54995 * 325.67289 * 7 5 4 9 9 C 1.53001 * 117.49589 * 111.38264 * 7 5 4 10 10 C 1.52991 * 60.00062 * 107.48758 * 9 7 5 11 11 H 1.09000 * 117.51862 * 252.51403 * 10 9 7 12 12 C 1.53006 * 117.50107 * 107.48790 * 10 9 7 13 13 C 1.50694 * 109.46989 * 120.00526 * 2 1 3 14 14 O 1.21280 * 120.00221 * 105.65805 * 13 2 1 15 15 N 1.34775 * 119.99936 * 285.65881 * 13 2 1 16 16 C 1.46505 * 120.00179 * 183.79967 * 15 13 2 17 17 C 1.46499 * 120.00140 * 3.80133 * 15 13 2 18 18 C 1.50695 * 109.47286 * 95.29252 * 17 15 13 19 19 H 1.08003 * 120.00117 * 0.02562 * 18 17 15 20 20 C 1.37880 * 119.99994 * 179.97438 * 18 17 15 21 21 N 1.31513 * 119.99958 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99903 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47069 * 89.99901 * 22 20 18 24 24 H 1.48501 * 109.46738 * 209.99367 * 22 20 18 25 25 H 1.48498 * 109.47060 * 329.99712 * 22 20 18 26 26 H 1.09005 * 109.46597 * 61.82768 * 1 2 3 27 27 H 1.09004 * 109.47287 * 181.82462 * 1 2 3 28 28 H 1.08997 * 109.47230 * 301.83079 * 1 2 3 29 29 H 1.09006 * 117.49443 * 214.98115 * 9 7 5 30 30 H 1.08997 * 117.50136 * 359.97438 * 9 7 5 31 31 H 1.08994 * 109.46902 * 351.37539 * 12 10 9 32 32 H 1.09003 * 109.47057 * 111.37428 * 12 10 9 33 33 H 1.08997 * 109.47195 * 231.37503 * 12 10 9 34 34 H 1.09004 * 109.46790 * 273.86851 * 16 15 13 35 35 H 1.09002 * 109.47177 * 33.86545 * 16 15 13 36 36 H 1.09000 * 109.47240 * 153.86938 * 16 15 13 37 37 H 1.08995 * 109.47234 * 215.29793 * 17 15 13 38 38 H 1.09000 * 109.46717 * 335.29499 * 17 15 13 39 39 H 0.97006 * 119.99672 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2171 0.0641 -2.2811 6 8 1.9983 1.2520 -2.2503 7 6 2.7193 -0.5770 -3.5492 8 1 3.4131 -1.4067 -3.4138 9 6 1.7547 -0.6483 -4.7347 10 6 2.9308 0.3297 -4.7633 11 1 2.7071 1.3899 -4.6448 12 6 4.0997 0.0021 -5.6947 13 6 2.0323 -0.7105 1.2304 14 8 2.5017 -1.8250 1.1379 15 7 1.9599 -0.1075 2.4335 16 6 2.5233 -0.7628 3.6165 17 6 1.3177 1.2033 2.5584 18 6 -0.1200 1.0210 2.9718 19 1 -0.5157 0.0281 3.1264 20 6 -0.9299 2.1219 3.1536 21 7 -2.1847 1.9628 3.5139 22 14 -0.2453 3.8394 2.8868 23 1 -0.4442 4.2370 1.4699 24 1 -0.9529 4.7975 3.7738 25 1 1.2052 3.8490 3.2047 26 1 -0.3633 0.4852 -0.9060 27 1 -0.3634 -1.0272 0.0327 28 1 -0.3633 0.5420 0.8731 29 1 1.8136 -1.5254 -5.3793 30 1 0.7567 -0.2320 -4.5973 31 1 3.9690 -1.0001 -6.1029 32 1 4.1287 0.7254 -6.5096 33 1 5.0339 0.0475 -5.1351 34 1 1.7822 -1.4369 4.0460 35 1 3.4085 -1.3308 3.3302 36 1 2.7985 -0.0082 4.3534 37 1 1.8401 1.7936 3.3111 38 1 1.3573 1.7201 1.5996 39 1 -2.7546 2.7374 3.6414 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728921258.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:19 Heat of formation + Delta-G solvation = -112.876370 kcal Electronic energy + Delta-G solvation = -21156.151303 eV Core-core repulsion = 17871.408364 eV Total energy + Delta-G solvation = -3284.742939 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.06367 -40.79694 -38.66078 -37.27681 -36.98700 -34.60332 -33.15436 -30.29223 -29.74424 -28.07093 -26.41333 -24.83272 -24.21571 -22.12598 -21.12135 -20.37251 -19.34477 -19.05825 -18.21112 -17.66262 -17.20885 -16.82676 -16.54821 -15.84198 -15.33335 -15.21787 -14.80077 -14.55080 -14.31418 -14.14071 -13.91265 -13.69699 -13.56180 -13.34222 -13.20632 -12.97492 -12.69720 -12.67664 -12.48837 -12.38273 -12.08371 -11.96741 -11.70736 -11.69160 -11.36718 -11.11511 -10.87458 -10.75362 -9.61483 -8.33563 -6.39750 0.92273 1.20172 1.38329 1.40710 1.41431 1.48211 2.26917 2.31074 2.70336 2.99020 3.32512 3.48022 3.60421 3.71821 3.75573 3.88771 4.09048 4.36774 4.40087 4.53253 4.58719 4.61770 4.64511 4.72297 4.77142 4.83282 4.89212 4.93079 4.99864 5.17523 5.25125 5.27776 5.39121 5.40570 5.53293 6.07369 6.39400 6.57168 6.64450 7.00991 7.23943 8.81510 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020740 B = 0.005242 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.727101 B = 5340.656738 C = 6079.531990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.081 3.919 3 H 0.106 0.894 4 O -0.338 6.338 5 C 0.483 3.517 6 O -0.535 6.535 7 C -0.184 4.184 8 H 0.152 0.848 9 C -0.130 4.130 10 C -0.114 4.114 11 H 0.102 0.898 12 C -0.120 4.120 13 C 0.517 3.483 14 O -0.571 6.571 15 N -0.592 5.592 16 C 0.093 3.907 17 C 0.206 3.794 18 C -0.537 4.537 19 H 0.040 0.960 20 C 0.030 3.970 21 N -0.932 5.932 22 Si 0.927 3.073 23 H -0.267 1.267 24 H -0.282 1.282 25 H -0.237 1.237 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.110 0.890 29 H 0.141 0.859 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.041 0.959 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.244 -1.703 -14.612 18.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.023 3.977 3 H 0.124 0.876 4 O -0.254 6.254 5 C 0.328 3.672 6 O -0.425 6.425 7 C -0.202 4.202 8 H 0.170 0.830 9 C -0.167 4.167 10 C -0.133 4.133 11 H 0.121 0.879 12 C -0.177 4.177 13 C 0.304 3.696 14 O -0.452 6.452 15 N -0.323 5.323 16 C -0.049 4.049 17 C 0.084 3.916 18 C -0.575 4.575 19 H 0.058 0.942 20 C -0.171 4.171 21 N -0.571 5.571 22 Si 0.750 3.250 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.160 1.160 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.128 0.872 29 H 0.159 0.841 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.262 -1.836 -14.526 18.472 hybrid contribution -0.584 0.850 0.646 1.217 sum 10.678 -0.986 -13.880 17.540 Atomic orbital electron populations 1.22390 0.90908 1.03728 1.05869 1.22421 0.96860 0.96679 0.81738 0.87622 1.86581 1.76594 1.42231 1.19990 1.23576 0.73121 0.85247 0.85230 1.90630 1.49654 1.17669 1.84541 1.22013 1.07969 1.06013 0.84253 0.82993 1.23382 0.94801 1.02817 0.95707 1.22620 0.99203 0.97062 0.94386 0.87943 1.21444 0.95118 1.03160 0.97960 1.20157 0.78541 0.85865 0.85025 1.90608 1.47900 1.19886 1.86819 1.47824 1.56026 1.21335 1.07146 1.21676 0.98099 0.98475 0.86620 1.19919 0.92473 0.80709 0.98492 1.21328 0.94791 0.93954 1.47456 0.94172 1.25645 0.94657 1.03079 0.93689 1.70021 1.07397 1.32323 1.47351 0.86009 0.80631 0.79346 0.79003 1.19237 1.20704 1.16023 0.91084 0.92203 0.87166 0.84055 0.88775 0.90424 0.90303 0.91685 0.93580 0.90852 0.88667 0.92505 0.94112 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.00 9.32 71.98 0.67 -6.33 16 2 C 0.08 3.25 2.14 29.85 0.06 3.32 16 3 H 0.11 4.19 5.78 -2.39 -0.01 4.18 16 4 O -0.34 -12.77 9.46 -45.22 -0.43 -13.19 16 5 C 0.48 15.87 7.71 71.24 0.55 16.41 16 6 O -0.54 -19.95 15.48 21.96 0.34 -19.61 16 7 C -0.18 -4.13 6.02 -11.54 -0.07 -4.20 16 8 H 0.15 2.88 8.14 -2.39 -0.02 2.86 16 9 C -0.13 -2.20 9.88 30.59 0.30 -1.90 16 10 C -0.11 -2.05 5.92 -10.80 -0.06 -2.12 16 11 H 0.10 2.20 7.67 -2.39 -0.02 2.19 16 12 C -0.12 -1.39 10.19 71.98 0.73 -0.65 16 13 C 0.52 22.33 7.00 87.66 0.61 22.95 16 14 O -0.57 -26.87 16.25 15.34 0.25 -26.62 16 15 N -0.59 -24.38 2.86 -851.14 -2.43 -26.81 16 16 C 0.09 3.23 10.40 127.77 1.33 4.56 16 17 C 0.21 8.78 3.78 85.63 0.32 9.11 16 18 C -0.54 -27.62 7.38 25.60 0.19 -27.43 16 19 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 20 C 0.03 1.57 5.47 84.66 0.46 2.03 16 21 N -0.93 -53.71 13.96 21.45 0.30 -53.41 16 22 Si 0.93 39.36 27.47 68.60 1.88 41.25 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.24 -9.02 6.54 99.48 0.65 -8.37 16 26 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 27 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.11 5.08 4.35 -2.39 -0.01 5.07 16 29 H 0.14 1.51 8.05 -2.38 -0.02 1.49 16 30 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.08 0.66 7.90 -2.39 -0.02 0.64 16 32 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.07 2.38 7.60 -2.39 -0.02 2.36 16 36 H 0.09 2.79 7.90 -2.39 -0.02 2.77 16 37 H 0.06 2.25 7.01 -2.39 -0.02 2.23 16 38 H 0.04 1.70 5.06 -2.39 -0.01 1.69 16 39 H 0.27 14.60 8.31 -92.70 -0.77 13.83 16 Total: -1.00 -67.21 326.11 6.00 -61.21 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.99 Total: 21.45 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: 5.10 Total: 15.75 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -2.13 Total: -80.22 kcal Atomic # 8 Polarization: -59.58 SS G_CDS: 0.16 Total: -59.42 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 1.88 Total: 41.25 kcal Total: -67.21 6.00 -61.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728921258.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.671 kcal (2) G-P(sol) polarization free energy of solvation -67.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds