Wall clock time and date at job start Mon Mar 30 2020 01:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47067 * 2 1 4 4 O 1.45202 * 109.47525 * 240.00835 * 2 1 3 5 5 C 1.34227 * 117.00431 * 89.98995 * 4 2 1 6 6 O 1.20826 * 120.00057 * 0.02562 * 5 4 2 7 7 C 1.50693 * 119.99836 * 180.02562 * 5 4 2 8 8 H 1.09004 * 115.55619 * 325.67396 * 7 5 4 9 9 C 1.53006 * 117.51740 * 111.37911 * 7 5 4 10 10 C 1.52999 * 60.00089 * 107.48009 * 9 7 5 11 11 H 1.09002 * 117.49803 * 107.49109 * 10 9 7 12 12 C 1.53005 * 117.51737 * 252.51928 * 10 9 7 13 13 C 1.50696 * 109.47429 * 120.00077 * 2 1 3 14 14 O 1.21284 * 120.00123 * 119.99885 * 13 2 1 15 15 N 1.34775 * 120.00400 * 300.00338 * 13 2 1 16 16 C 1.46504 * 119.99637 * 0.02562 * 15 13 2 17 17 C 1.46493 * 120.00397 * 179.97438 * 15 13 2 18 18 C 1.50700 * 109.46920 * 90.00134 * 17 15 13 19 19 H 1.07997 * 120.00340 * 0.02562 * 18 17 15 20 20 C 1.37884 * 120.00190 * 179.97438 * 18 17 15 21 21 N 1.31515 * 119.99552 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99976 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47071 * 60.00117 * 22 20 18 24 24 H 1.48504 * 109.46707 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46949 * 300.00113 * 22 20 18 26 26 H 1.09002 * 109.47412 * 59.99800 * 1 2 3 27 27 H 1.09002 * 109.46916 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47422 * 299.99235 * 1 2 3 29 29 H 1.09003 * 117.49619 * 359.97438 * 9 7 5 30 30 H 1.08995 * 117.50015 * 214.96850 * 9 7 5 31 31 H 1.08996 * 109.46543 * 128.71686 * 12 10 9 32 32 H 1.08999 * 109.47163 * 248.71920 * 12 10 9 33 33 H 1.09000 * 109.46851 * 8.72119 * 12 10 9 34 34 H 1.08995 * 109.47353 * 89.99864 * 16 15 13 35 35 H 1.09007 * 109.46959 * 209.99997 * 16 15 13 36 36 H 1.09000 * 109.46890 * 329.99826 * 16 15 13 37 37 H 1.08998 * 109.47357 * 210.00191 * 17 15 13 38 38 H 1.09003 * 109.47417 * 330.00100 * 17 15 13 39 39 H 0.96995 * 119.99442 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0141 -0.6843 -1.1856 5 6 2.2171 0.0642 -2.2812 6 8 1.9980 1.2521 -2.2504 7 6 2.7182 -0.5769 -3.5495 8 1 3.4116 -1.4071 -3.4146 9 6 1.7533 -0.6480 -4.7348 10 6 2.9297 0.3298 -4.7636 11 1 3.7622 0.0962 -5.4274 12 6 2.6162 1.8181 -4.5971 13 6 2.0324 -0.7104 1.2304 14 8 2.7296 -1.6965 1.1191 15 7 1.7068 -0.2501 2.4546 16 6 0.8640 0.9407 2.5890 17 6 2.1947 -0.9410 3.6506 18 6 3.5224 -0.3579 4.0610 19 1 3.9588 0.4471 3.4885 20 6 4.1795 -0.8514 5.1682 21 7 3.6477 -1.8314 5.8658 22 14 5.8248 -0.1282 5.6773 23 1 5.6597 1.3176 5.9730 24 1 6.3195 -0.8287 6.8897 25 1 6.8034 -0.2991 4.5735 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 0.7555 -0.2313 -4.5971 30 1 1.8118 -1.5248 -5.3795 31 1 3.2472 2.2367 -3.8130 32 1 2.8100 2.3375 -5.5355 33 1 1.5681 1.9402 -4.3238 34 1 -0.1838 0.6423 2.6226 35 1 1.1217 1.4663 3.5086 36 1 1.0271 1.5994 1.7361 37 1 1.4767 -0.8155 4.4610 38 1 2.3156 -2.0023 3.4334 39 1 4.1102 -2.1788 6.6444 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728921261.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:26 Heat of formation + Delta-G solvation = -88.617979 kcal Electronic energy + Delta-G solvation = -20974.126873 eV Core-core repulsion = 17690.435856 eV Total energy + Delta-G solvation = -3283.691017 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.85011 -39.18781 -37.60076 -35.91636 -34.94789 -32.91668 -31.56808 -28.88680 -27.68440 -26.28668 -25.38502 -24.02522 -22.36784 -21.34381 -20.09227 -18.84076 -17.90971 -16.56016 -16.50996 -16.22620 -15.76898 -15.40648 -15.02188 -14.56739 -14.19366 -13.56032 -13.51029 -13.25560 -12.91386 -12.71098 -12.55561 -12.34500 -12.18502 -12.09038 -11.76402 -11.63577 -11.35570 -11.14578 -10.93479 -10.68229 -10.57924 -10.54670 -10.42660 -10.17644 -10.08200 -9.67599 -8.90301 -8.45125 -7.73469 -6.06423 -4.11502 2.06992 2.47932 3.26170 3.31779 3.35933 3.40296 3.47771 3.87665 4.32846 4.43133 4.50444 4.59469 4.81877 4.91905 5.01996 5.08981 5.11833 5.28145 5.39034 5.50496 5.56590 5.62476 5.66116 5.68217 5.75572 5.83597 5.87625 5.99119 6.21068 6.22805 6.52330 6.97901 7.38322 7.45892 7.79395 7.89750 8.19481 8.28729 8.84102 8.98938 9.53552 11.01732 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026659 B = 0.004211 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.045448 B = 6647.865440 C = 7040.241568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.070 3.930 3 H 0.106 0.894 4 O -0.322 6.322 5 C 0.491 3.509 6 O -0.507 6.507 7 C -0.168 4.168 8 H 0.137 0.863 9 C -0.147 4.147 10 C -0.118 4.118 11 H 0.117 0.883 12 C -0.116 4.116 13 C 0.508 3.492 14 O -0.520 6.520 15 N -0.596 5.596 16 C 0.076 3.924 17 C 0.247 3.753 18 C -0.530 4.530 19 H 0.057 0.943 20 C 0.062 3.938 21 N -0.894 5.894 22 Si 0.899 3.101 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.276 1.276 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.036 0.964 38 H 0.045 0.955 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.029 5.672 -18.170 20.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.012 3.988 3 H 0.123 0.877 4 O -0.237 6.237 5 C 0.335 3.665 6 O -0.396 6.396 7 C -0.187 4.187 8 H 0.155 0.845 9 C -0.184 4.184 10 C -0.136 4.136 11 H 0.135 0.865 12 C -0.173 4.173 13 C 0.293 3.707 14 O -0.395 6.395 15 N -0.329 5.329 16 C -0.068 4.068 17 C 0.128 3.872 18 C -0.569 4.569 19 H 0.075 0.925 20 C -0.140 4.140 21 N -0.533 5.533 22 Si 0.727 3.273 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.202 1.202 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.705 5.364 -17.980 19.925 hybrid contribution 0.932 0.443 0.546 1.168 sum -5.773 5.807 -17.434 19.261 Atomic orbital electron populations 1.22390 0.92500 1.04046 1.04207 1.22603 0.95627 0.97642 0.82939 0.87682 1.86603 1.76270 1.41384 1.19439 1.22635 0.73841 0.85307 0.84729 1.90636 1.48534 1.16304 1.84155 1.21818 1.06142 1.04807 0.85933 0.84498 1.23163 0.95402 1.02225 0.97580 1.22522 1.00272 0.93984 0.96840 0.86474 1.21433 1.02986 0.91907 1.01011 1.19788 0.81709 0.85403 0.83850 1.90706 1.36922 1.26012 1.85879 1.48057 1.49842 1.28378 1.06669 1.21883 0.93931 0.88059 1.02910 1.19344 0.94351 0.93746 0.79718 1.21396 1.04904 1.19253 1.11351 0.92474 1.24931 0.97976 0.94915 0.96181 1.69921 1.39079 1.25957 1.18354 0.86541 0.83813 0.79050 0.77931 1.20203 1.21104 1.20155 0.91466 0.91037 0.88886 0.88024 0.87219 0.91201 0.92857 0.91720 0.93027 0.90317 0.92300 0.94592 0.93651 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 9.18 37.16 0.34 -1.96 16 2 C 0.07 1.20 2.18 -27.89 -0.06 1.14 16 3 H 0.11 1.73 6.42 -51.92 -0.33 1.40 16 4 O -0.32 -5.62 9.42 -45.90 -0.43 -6.06 16 5 C 0.49 7.31 7.70 36.00 0.28 7.59 16 6 O -0.51 -7.95 12.33 -18.75 -0.23 -8.18 16 7 C -0.17 -1.88 6.30 -91.77 -0.58 -2.46 16 8 H 0.14 1.41 8.14 -51.93 -0.42 0.99 16 9 C -0.15 -1.23 9.88 -26.73 -0.26 -1.49 16 10 C -0.12 -1.07 6.41 -90.61 -0.58 -1.65 16 11 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 12 C -0.12 -1.16 8.43 37.16 0.31 -0.85 16 13 C 0.51 11.12 7.15 -10.99 -0.08 11.04 16 14 O -0.52 -13.79 16.08 -14.10 -0.23 -14.02 16 15 N -0.60 -12.76 2.86 -182.96 -0.52 -13.28 16 16 C 0.08 1.19 8.80 59.85 0.53 1.71 16 17 C 0.25 6.48 5.16 -5.20 -0.03 6.45 16 18 C -0.53 -15.16 9.39 -34.44 -0.32 -15.48 16 19 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 20 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 22 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.09 1.08 4.53 -51.93 -0.24 0.85 16 29 H 0.10 0.86 8.05 -51.93 -0.42 0.44 16 30 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.82 7.27 -51.93 -0.38 0.44 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.70 7.01 -51.93 -0.36 0.34 16 34 H 0.05 0.67 6.95 -51.93 -0.36 0.31 16 35 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 36 H 0.06 0.78 6.01 -51.93 -0.31 0.47 16 37 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 38 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 325.64 15.07 4.91 4.91 Total: -1.00 -34.30 325.64 -7.05 -41.35 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -5.71 Total: -1.56 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -0.55 Total: 5.74 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.21 Total: -39.14 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.89 Total: -28.25 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.30 -7.05 -41.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728921261.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.273 kcal (2) G-P(sol) polarization free energy of solvation -34.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds