Wall clock time and date at job start Mon Mar 30 2020 01:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47067 * 2 1 4 4 O 1.45202 * 109.47525 * 240.00835 * 2 1 3 5 5 C 1.34227 * 117.00431 * 89.98995 * 4 2 1 6 6 O 1.20826 * 120.00057 * 0.02562 * 5 4 2 7 7 C 1.50693 * 119.99836 * 180.02562 * 5 4 2 8 8 H 1.09004 * 115.55619 * 325.67396 * 7 5 4 9 9 C 1.53006 * 117.51740 * 111.37911 * 7 5 4 10 10 C 1.52999 * 60.00089 * 107.48009 * 9 7 5 11 11 H 1.09002 * 117.49803 * 107.49109 * 10 9 7 12 12 C 1.53005 * 117.51737 * 252.51928 * 10 9 7 13 13 C 1.50696 * 109.47429 * 120.00077 * 2 1 3 14 14 O 1.21284 * 120.00123 * 119.99885 * 13 2 1 15 15 N 1.34775 * 120.00400 * 300.00338 * 13 2 1 16 16 C 1.46504 * 119.99637 * 0.02562 * 15 13 2 17 17 C 1.46493 * 120.00397 * 179.97438 * 15 13 2 18 18 C 1.50700 * 109.46920 * 90.00134 * 17 15 13 19 19 H 1.07997 * 120.00340 * 0.02562 * 18 17 15 20 20 C 1.37884 * 120.00190 * 179.97438 * 18 17 15 21 21 N 1.31515 * 119.99552 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99976 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47071 * 60.00117 * 22 20 18 24 24 H 1.48504 * 109.46707 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46949 * 300.00113 * 22 20 18 26 26 H 1.09002 * 109.47412 * 59.99800 * 1 2 3 27 27 H 1.09002 * 109.46916 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47422 * 299.99235 * 1 2 3 29 29 H 1.09003 * 117.49619 * 359.97438 * 9 7 5 30 30 H 1.08995 * 117.50015 * 214.96850 * 9 7 5 31 31 H 1.08996 * 109.46543 * 128.71686 * 12 10 9 32 32 H 1.08999 * 109.47163 * 248.71920 * 12 10 9 33 33 H 1.09000 * 109.46851 * 8.72119 * 12 10 9 34 34 H 1.08995 * 109.47353 * 89.99864 * 16 15 13 35 35 H 1.09007 * 109.46959 * 209.99997 * 16 15 13 36 36 H 1.09000 * 109.46890 * 329.99826 * 16 15 13 37 37 H 1.08998 * 109.47357 * 210.00191 * 17 15 13 38 38 H 1.09003 * 109.47417 * 330.00100 * 17 15 13 39 39 H 0.96995 * 119.99442 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0141 -0.6843 -1.1856 5 6 2.2171 0.0642 -2.2812 6 8 1.9980 1.2521 -2.2504 7 6 2.7182 -0.5769 -3.5495 8 1 3.4116 -1.4071 -3.4146 9 6 1.7533 -0.6480 -4.7348 10 6 2.9297 0.3298 -4.7636 11 1 3.7622 0.0962 -5.4274 12 6 2.6162 1.8181 -4.5971 13 6 2.0324 -0.7104 1.2304 14 8 2.7296 -1.6965 1.1191 15 7 1.7068 -0.2501 2.4546 16 6 0.8640 0.9407 2.5890 17 6 2.1947 -0.9410 3.6506 18 6 3.5224 -0.3579 4.0610 19 1 3.9588 0.4471 3.4885 20 6 4.1795 -0.8514 5.1682 21 7 3.6477 -1.8314 5.8658 22 14 5.8248 -0.1282 5.6773 23 1 5.6597 1.3176 5.9730 24 1 6.3195 -0.8287 6.8897 25 1 6.8034 -0.2991 4.5735 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 0.7555 -0.2313 -4.5971 30 1 1.8118 -1.5248 -5.3795 31 1 3.2472 2.2367 -3.8130 32 1 2.8100 2.3375 -5.5355 33 1 1.5681 1.9402 -4.3238 34 1 -0.1838 0.6423 2.6226 35 1 1.1217 1.4663 3.5086 36 1 1.0271 1.5994 1.7361 37 1 1.4767 -0.8155 4.4610 38 1 2.3156 -2.0023 3.4334 39 1 4.1102 -2.1788 6.6444 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728921261.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:25 Heat of formation + Delta-G solvation = -109.709058 kcal Electronic energy + Delta-G solvation = -20975.041451 eV Core-core repulsion = 17690.435856 eV Total energy + Delta-G solvation = -3284.605594 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.05601 -40.72948 -38.67698 -37.05444 -36.74267 -34.94598 -33.05501 -29.77605 -29.49928 -27.78006 -26.48007 -25.67907 -23.92470 -22.18539 -21.14804 -20.45643 -19.05822 -18.70046 -18.01171 -17.53266 -17.08679 -16.84350 -16.50768 -15.96794 -15.77649 -14.84230 -14.79972 -14.42126 -14.22952 -13.99404 -13.70442 -13.68425 -13.52860 -13.37094 -13.26523 -13.01484 -12.82204 -12.61362 -12.45419 -12.40293 -12.21054 -11.92045 -11.75820 -11.40205 -11.28247 -10.99388 -10.66752 -10.63246 -9.54810 -8.25721 -6.40624 0.97396 1.28838 1.35317 1.39541 1.46727 1.58780 2.29389 2.41735 2.71878 3.04224 3.37309 3.49805 3.60459 3.75437 3.82027 3.85720 4.09723 4.29708 4.42807 4.50938 4.59309 4.65131 4.75584 4.83889 4.85533 4.92700 4.95035 5.00628 5.07381 5.14524 5.17252 5.29232 5.48344 5.54149 5.75770 6.01138 6.51810 6.66948 6.67861 7.17568 7.33299 8.81553 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026659 B = 0.004211 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.045448 B = 6647.865440 C = 7040.241568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.080 3.920 3 H 0.113 0.887 4 O -0.346 6.346 5 C 0.486 3.514 6 O -0.520 6.520 7 C -0.195 4.195 8 H 0.142 0.858 9 C -0.126 4.126 10 C -0.111 4.111 11 H 0.143 0.857 12 C -0.116 4.116 13 C 0.498 3.502 14 O -0.581 6.581 15 N -0.599 5.599 16 C 0.068 3.932 17 C 0.260 3.740 18 C -0.550 4.550 19 H 0.051 0.949 20 C 0.011 3.989 21 N -0.926 5.926 22 Si 0.967 3.033 23 H -0.259 1.259 24 H -0.275 1.275 25 H -0.280 1.280 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.137 0.863 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.035 0.965 38 H 0.000 1.000 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.427 7.207 -19.772 22.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.021 3.979 3 H 0.131 0.869 4 O -0.262 6.262 5 C 0.331 3.669 6 O -0.409 6.409 7 C -0.214 4.214 8 H 0.159 0.841 9 C -0.162 4.162 10 C -0.129 4.129 11 H 0.161 0.839 12 C -0.173 4.173 13 C 0.285 3.715 14 O -0.461 6.461 15 N -0.331 5.331 16 C -0.074 4.074 17 C 0.139 3.861 18 C -0.589 4.589 19 H 0.070 0.930 20 C -0.189 4.189 21 N -0.565 5.565 22 Si 0.791 3.209 23 H -0.184 1.184 24 H -0.200 1.200 25 H -0.206 1.206 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.131 0.869 29 H 0.119 0.881 30 H 0.156 0.844 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.053 0.947 38 H 0.018 0.982 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.147 6.950 -19.590 21.981 hybrid contribution 1.024 -0.026 1.009 1.438 sum -6.123 6.925 -18.581 20.754 Atomic orbital electron populations 1.22390 0.89213 1.04446 1.06117 1.22495 0.97858 0.96562 0.80948 0.86945 1.86617 1.76892 1.42538 1.20104 1.23389 0.73332 0.85321 0.84894 1.90621 1.49256 1.16725 1.84299 1.21994 1.08216 1.06115 0.85083 0.84054 1.23337 0.94836 1.02766 0.95307 1.22708 1.01581 0.93185 0.95381 0.83900 1.21402 1.01666 0.92914 1.01331 1.20703 0.80666 0.84849 0.85262 1.90661 1.39671 1.28823 1.86915 1.48040 1.50090 1.29565 1.05377 1.22247 0.94738 0.86275 1.04113 1.18845 0.93987 0.91763 0.81464 1.21670 1.06087 1.19405 1.11688 0.93042 1.25835 1.01759 0.95178 0.96100 1.70031 1.40709 1.26972 1.18779 0.85480 0.78743 0.79167 0.77504 1.18377 1.20029 1.20573 0.89463 0.91432 0.86936 0.88083 0.84447 0.93479 0.90617 0.92934 0.89518 0.90617 0.89414 0.94746 0.98159 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 9.18 71.98 0.66 -3.36 16 2 C 0.08 2.68 2.18 29.85 0.07 2.74 16 3 H 0.11 3.59 6.42 -2.38 -0.02 3.57 16 4 O -0.35 -12.14 9.42 -45.04 -0.42 -12.57 16 5 C 0.49 14.22 7.70 71.23 0.55 14.77 16 6 O -0.52 -15.89 12.33 21.96 0.27 -15.62 16 7 C -0.20 -4.11 6.30 -11.54 -0.07 -4.19 16 8 H 0.14 2.80 8.14 -2.38 -0.02 2.78 16 9 C -0.13 -1.76 9.88 30.60 0.30 -1.46 16 10 C -0.11 -1.73 6.41 -10.79 -0.07 -1.80 16 11 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 12 C -0.12 -2.12 8.43 71.98 0.61 -1.52 16 13 C 0.50 22.32 7.15 87.66 0.63 22.95 16 14 O -0.58 -32.43 16.08 15.76 0.25 -32.18 16 15 N -0.60 -25.93 2.86 -851.14 -2.43 -28.36 16 16 C 0.07 2.00 8.80 127.77 1.12 3.12 16 17 C 0.26 14.16 5.16 85.63 0.44 14.61 16 18 C -0.55 -32.18 9.39 25.60 0.24 -31.94 16 19 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 20 C 0.01 0.62 5.46 84.66 0.46 1.09 16 21 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 22 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 23 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 25 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 26 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.11 2.26 4.53 -2.39 -0.01 2.25 16 29 H 0.10 1.46 8.05 -2.39 -0.02 1.44 16 30 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.07 7.27 -2.39 -0.02 1.06 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.05 1.07 7.01 -2.39 -0.02 1.06 16 34 H 0.09 1.98 6.95 -2.39 -0.02 1.96 16 35 H 0.08 2.30 8.07 -2.38 -0.02 2.28 16 36 H 0.09 2.09 6.01 -2.39 -0.01 2.08 16 37 H 0.03 1.86 8.07 -2.39 -0.02 1.84 16 38 H 0.00 0.02 7.42 -2.39 -0.02 0.00 16 39 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -78.08 325.64 5.96 -72.12 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 1.04 Total: 10.10 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 4.94 Total: 15.01 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -2.15 Total: -84.18 kcal Atomic # 8 Polarization: -60.47 SS G_CDS: 0.10 Total: -60.37 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -78.08 5.96 -72.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728921261.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.593 kcal (2) G-P(sol) polarization free energy of solvation -78.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds