Wall clock time and date at job start Mon Mar 30 2020 00:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 119.99991 * 2 1 4 4 N 1.46501 * 109.46726 * 125.00205 * 3 2 1 5 5 C 1.34783 * 119.99874 * 180.02562 * 4 3 2 6 6 S 1.71197 * 119.99842 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99707 * 180.02562 * 5 4 3 8 8 C 1.46504 * 119.99730 * 179.97438 * 7 5 4 9 9 C 1.53081 * 109.43848 * 84.79387 * 8 7 5 10 10 C 1.53190 * 109.29209 * 181.23616 * 9 8 7 11 11 N 1.46921 * 108.89311 * 305.57883 * 10 9 8 12 12 C 1.36940 * 120.63187 * 233.51481 * 11 10 9 13 13 H 1.08001 * 120.00319 * 152.61971 * 12 11 10 14 14 C 1.38813 * 119.99903 * 332.62203 * 12 11 10 15 15 N 1.31624 * 120.00070 * 159.34992 * 14 12 11 16 16 Si 1.86800 * 120.00077 * 339.35529 * 14 12 11 17 17 H 1.48494 * 109.47321 * 92.87851 * 16 14 12 18 18 H 1.48501 * 109.47194 * 212.88430 * 16 14 12 19 19 H 1.48509 * 109.46983 * 332.87654 * 16 14 12 20 20 C 1.46923 * 118.74178 * 53.54201 * 11 10 9 21 21 C 1.53035 * 109.45960 * 204.99782 * 8 7 5 22 22 H 1.08001 * 120.00274 * 359.97438 * 1 2 3 23 23 H 1.07997 * 120.00413 * 179.97438 * 1 2 3 24 24 H 1.08000 * 119.99893 * 180.02562 * 2 1 3 25 25 H 1.09004 * 109.47169 * 5.00581 * 3 2 1 26 26 H 1.08996 * 109.47568 * 245.00509 * 3 2 1 27 27 H 0.97001 * 120.00469 * 0.02562 * 4 3 2 28 28 H 0.96998 * 120.00063 * 359.97438 * 7 5 4 29 29 H 1.08998 * 109.46073 * 324.97324 * 8 7 5 30 30 H 1.08992 * 109.38800 * 61.36034 * 9 8 7 31 31 H 1.09002 * 109.61927 * 301.25313 * 9 8 7 32 32 H 1.08999 * 109.58729 * 185.71870 * 10 9 8 33 33 H 1.09004 * 109.58886 * 65.43758 * 10 9 8 34 34 H 0.97001 * 119.99914 * 180.02562 * 15 14 12 35 35 H 1.09004 * 109.59094 * 66.17180 * 20 11 10 36 36 H 1.09001 * 109.59077 * 186.46452 * 20 11 10 37 37 H 1.09002 * 109.49848 * 58.67960 * 21 8 7 38 38 H 1.09002 * 109.52425 * 298.59433 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 3.7783 2.4089 1.3335 6 16 3.6882 3.7456 0.2677 7 7 4.6345 2.4332 2.3741 8 6 5.4877 3.6038 2.5935 9 6 4.7128 4.6571 3.3894 10 6 5.5972 5.8916 3.5902 11 7 6.8630 5.4746 4.2086 12 6 7.3082 6.0717 5.3578 13 1 7.9446 5.5257 6.0384 14 6 6.9414 7.3786 5.6478 15 7 7.0062 7.8211 6.8858 16 14 6.3558 8.5096 4.2813 17 1 4.8755 8.4433 4.1841 18 1 6.7703 9.9038 4.5808 19 1 6.9562 8.0808 2.9925 20 6 7.6425 4.4051 3.5704 21 6 6.7367 3.1856 3.3727 22 1 -0.5400 0.9353 0.0004 23 1 -0.5401 -0.9352 -0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3585 2.1316 0.0897 26 1 2.6212 1.4027 -0.9314 27 1 3.0451 0.5743 1.7352 28 1 4.6858 1.6757 2.9778 29 1 5.7832 4.0232 1.6318 30 1 4.4362 4.2459 4.3602 31 1 3.8126 4.9393 2.8435 32 1 5.0893 6.6030 4.2414 33 1 5.7980 6.3581 2.6257 34 1 6.7495 8.7343 7.0885 35 1 8.0098 4.7480 2.6031 36 1 8.4855 4.1373 4.2074 37 1 7.2745 2.4196 2.8140 38 1 6.4437 2.7886 4.3447 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730438908.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:22 Heat of formation + Delta-G solvation = 61.516649 kcal Electronic energy + Delta-G solvation = -18506.521857 eV Core-core repulsion = 15704.386788 eV Total energy + Delta-G solvation = -2802.135068 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.46629 -37.85261 -35.77814 -33.66541 -32.10687 -30.43671 -30.16015 -26.70998 -24.78242 -23.70719 -22.81745 -21.88240 -20.62690 -19.82264 -18.14682 -17.45371 -16.68562 -15.97999 -15.43356 -15.19828 -14.60900 -14.42457 -14.15110 -13.81420 -13.68356 -13.25281 -13.01676 -12.40578 -12.24782 -11.87901 -11.77942 -11.61815 -11.05376 -10.96307 -10.83918 -10.61559 -10.16660 -10.14540 -9.99749 -9.79923 -9.46642 -9.02182 -8.61285 -7.74325 -7.28585 -6.98164 -5.93921 -3.30394 1.45253 1.52477 2.09996 2.70522 3.39843 3.52597 3.55013 3.59830 4.30166 4.56777 4.61301 4.95310 5.02368 5.17003 5.24987 5.35538 5.37997 5.40717 5.58344 5.75121 5.80956 5.98984 6.04191 6.05395 6.14184 6.19833 6.24288 6.44993 6.51130 6.61537 6.65188 6.69824 6.85863 6.92942 7.29612 7.96482 8.32874 8.94176 9.73040 10.09984 11.21716 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.034086 B = 0.004283 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.244187 B = 6536.056553 C = 6828.649093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.184 4.184 3 C 0.155 3.845 4 N -0.691 5.691 5 C 0.562 3.438 6 S -0.647 6.647 7 N -0.674 5.674 8 C 0.148 3.852 9 C -0.138 4.138 10 C 0.131 3.869 11 N -0.607 5.607 12 C -0.263 4.263 13 H 0.085 0.915 14 C 0.025 3.975 15 N -0.909 5.909 16 Si 0.881 3.119 17 H -0.287 1.287 18 H -0.303 1.303 19 H -0.268 1.268 20 C 0.154 3.846 21 C -0.141 4.141 22 H 0.104 0.896 23 H 0.104 0.896 24 H 0.114 0.886 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.395 0.605 28 H 0.393 0.607 29 H 0.112 0.888 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.033 0.967 34 H 0.263 0.737 35 H 0.028 0.972 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.456 -18.363 -10.951 23.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.202 4.202 3 C 0.032 3.968 4 N -0.322 5.322 5 C 0.201 3.799 6 S -0.522 6.522 7 N -0.301 5.301 8 C 0.045 3.955 9 C -0.179 4.179 10 C 0.005 3.995 11 N -0.330 5.330 12 C -0.391 4.391 13 H 0.103 0.897 14 C -0.175 4.175 15 N -0.552 5.552 16 Si 0.711 3.289 17 H -0.214 1.214 18 H -0.231 1.231 19 H -0.192 1.192 20 C 0.027 3.973 21 C -0.182 4.182 22 H 0.122 0.878 23 H 0.122 0.878 24 H 0.132 0.868 25 H 0.107 0.893 26 H 0.111 0.889 27 H 0.231 0.769 28 H 0.229 0.771 29 H 0.130 0.870 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.488 -17.220 -11.600 22.828 hybrid contribution -0.371 -0.798 0.474 0.999 sum -9.859 -18.018 -11.125 23.358 Atomic orbital electron populations 1.24035 0.95733 1.02667 0.97153 1.23022 0.96347 0.97974 1.02906 1.20711 0.91419 0.95898 0.88813 1.44963 1.39363 1.16872 1.30979 1.22269 0.81025 0.89686 0.86911 1.93510 1.83700 1.27914 1.47107 1.45530 1.37641 1.21440 1.25516 1.21578 0.88918 0.83314 1.01670 1.22368 0.99464 0.97014 0.99022 1.21300 0.86709 0.94459 0.96997 1.44424 1.18934 1.41478 1.28194 1.18894 1.30184 0.94867 0.95152 0.89717 1.25274 0.99147 0.96869 0.96163 1.69838 1.50709 1.17320 1.17285 0.86978 0.77970 0.80079 0.83835 1.21430 1.23148 1.19249 1.20830 0.92850 0.87024 0.96619 1.22386 0.95898 1.00285 0.99586 0.87818 0.87778 0.86795 0.89265 0.88873 0.76888 0.77108 0.87043 0.92192 0.91029 0.90705 0.94910 0.92750 0.95389 0.91268 0.92132 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.84 14.32 29.01 0.42 -0.43 16 2 C -0.18 -1.08 9.63 -36.03 -0.35 -1.43 16 3 C 0.15 1.31 5.57 -5.19 -0.03 1.28 16 4 N -0.69 -6.14 5.55 -63.21 -0.35 -6.49 16 5 C 0.56 7.22 7.95 -86.91 -0.69 6.53 16 6 S -0.65 -11.48 26.57 -107.50 -2.86 -14.34 16 7 N -0.67 -8.06 5.08 -55.46 -0.28 -8.34 16 8 C 0.15 2.30 2.18 -67.87 -0.15 2.15 16 9 C -0.14 -2.54 5.60 -26.59 -0.15 -2.69 16 10 C 0.13 2.94 4.20 -3.71 -0.02 2.93 16 11 N -0.61 -14.23 2.77 -172.32 -0.48 -14.71 16 12 C -0.26 -7.28 10.03 -15.06 -0.15 -7.43 16 13 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 14 C 0.02 0.71 5.23 -17.43 -0.09 0.62 16 15 N -0.91 -27.93 13.97 55.49 0.78 -27.16 16 16 Si 0.88 22.88 24.34 -169.99 -4.14 18.74 16 17 H -0.29 -7.27 6.62 56.52 0.37 -6.90 16 18 H -0.30 -7.99 7.11 56.52 0.40 -7.58 16 19 H -0.27 -6.88 6.64 56.52 0.38 -6.50 16 20 C 0.15 2.89 6.52 -3.71 -0.02 2.87 16 21 C -0.14 -2.09 5.55 -26.61 -0.15 -2.24 16 22 H 0.10 0.57 7.84 -52.49 -0.41 0.15 16 23 H 0.10 0.41 8.06 -52.49 -0.42 -0.01 16 24 H 0.11 0.53 8.06 -52.49 -0.42 0.10 16 25 H 0.09 0.88 7.64 -51.93 -0.40 0.49 16 26 H 0.09 0.90 7.99 -51.93 -0.42 0.48 16 27 H 0.40 2.34 8.48 -40.82 -0.35 2.00 16 28 H 0.39 3.46 8.62 -40.82 -0.35 3.11 16 29 H 0.11 1.98 6.82 -51.93 -0.35 1.62 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.35 7.48 -51.93 -0.39 0.96 16 32 H 0.07 1.85 4.50 -51.93 -0.23 1.61 16 33 H 0.03 0.76 7.07 -51.93 -0.37 0.39 16 34 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 35 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 314.84 15.07 4.74 4.74 Total: -1.00 -33.74 314.84 -9.79 -43.53 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.82 Total: 1.86 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -1.38 Total: 2.16 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.34 Total: -56.69 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.14 Total: 18.74 kcal Atomic # 16 Polarization: -11.48 SS G_CDS: -2.86 Total: -14.34 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.74 -9.79 -43.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730438908.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.047 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds