Wall clock time and date at job start Mon Mar 30 2020 00:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 119.99991 * 2 1 4 4 N 1.46501 * 109.46726 * 125.00205 * 3 2 1 5 5 C 1.34783 * 119.99874 * 180.02562 * 4 3 2 6 6 S 1.71197 * 119.99842 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99707 * 180.02562 * 5 4 3 8 8 C 1.46504 * 119.99730 * 179.97438 * 7 5 4 9 9 C 1.53081 * 109.43848 * 84.79387 * 8 7 5 10 10 C 1.53190 * 109.29209 * 181.23616 * 9 8 7 11 11 N 1.46921 * 108.89311 * 305.57883 * 10 9 8 12 12 C 1.36940 * 120.63187 * 233.51481 * 11 10 9 13 13 H 1.08001 * 120.00319 * 152.61971 * 12 11 10 14 14 C 1.38813 * 119.99903 * 332.62203 * 12 11 10 15 15 N 1.31624 * 120.00070 * 159.34992 * 14 12 11 16 16 Si 1.86800 * 120.00077 * 339.35529 * 14 12 11 17 17 H 1.48494 * 109.47321 * 92.87851 * 16 14 12 18 18 H 1.48501 * 109.47194 * 212.88430 * 16 14 12 19 19 H 1.48509 * 109.46983 * 332.87654 * 16 14 12 20 20 C 1.46923 * 118.74178 * 53.54201 * 11 10 9 21 21 C 1.53035 * 109.45960 * 204.99782 * 8 7 5 22 22 H 1.08001 * 120.00274 * 359.97438 * 1 2 3 23 23 H 1.07997 * 120.00413 * 179.97438 * 1 2 3 24 24 H 1.08000 * 119.99893 * 180.02562 * 2 1 3 25 25 H 1.09004 * 109.47169 * 5.00581 * 3 2 1 26 26 H 1.08996 * 109.47568 * 245.00509 * 3 2 1 27 27 H 0.97001 * 120.00469 * 0.02562 * 4 3 2 28 28 H 0.96998 * 120.00063 * 359.97438 * 7 5 4 29 29 H 1.08998 * 109.46073 * 324.97324 * 8 7 5 30 30 H 1.08992 * 109.38800 * 61.36034 * 9 8 7 31 31 H 1.09002 * 109.61927 * 301.25313 * 9 8 7 32 32 H 1.08999 * 109.58729 * 185.71870 * 10 9 8 33 33 H 1.09004 * 109.58886 * 65.43758 * 10 9 8 34 34 H 0.97001 * 119.99914 * 180.02562 * 15 14 12 35 35 H 1.09004 * 109.59094 * 66.17180 * 20 11 10 36 36 H 1.09001 * 109.59077 * 186.46452 * 20 11 10 37 37 H 1.09002 * 109.49848 * 58.67960 * 21 8 7 38 38 H 1.09002 * 109.52425 * 298.59433 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 3.7783 2.4089 1.3335 6 16 3.6882 3.7456 0.2677 7 7 4.6345 2.4332 2.3741 8 6 5.4877 3.6038 2.5935 9 6 4.7128 4.6571 3.3894 10 6 5.5972 5.8916 3.5902 11 7 6.8630 5.4746 4.2086 12 6 7.3082 6.0717 5.3578 13 1 7.9446 5.5257 6.0384 14 6 6.9414 7.3786 5.6478 15 7 7.0062 7.8211 6.8858 16 14 6.3558 8.5096 4.2813 17 1 4.8755 8.4433 4.1841 18 1 6.7703 9.9038 4.5808 19 1 6.9562 8.0808 2.9925 20 6 7.6425 4.4051 3.5704 21 6 6.7367 3.1856 3.3727 22 1 -0.5400 0.9353 0.0004 23 1 -0.5401 -0.9352 -0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3585 2.1316 0.0897 26 1 2.6212 1.4027 -0.9314 27 1 3.0451 0.5743 1.7352 28 1 4.6858 1.6757 2.9778 29 1 5.7832 4.0232 1.6318 30 1 4.4362 4.2459 4.3602 31 1 3.8126 4.9393 2.8435 32 1 5.0893 6.6030 4.2414 33 1 5.7980 6.3581 2.6257 34 1 6.7495 8.7343 7.0885 35 1 8.0098 4.7480 2.6031 36 1 8.4855 4.1373 4.2074 37 1 7.2745 2.4196 2.8140 38 1 6.4437 2.7886 4.3447 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730438908.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:21 Heat of formation + Delta-G solvation = 37.882766 kcal Electronic energy + Delta-G solvation = -18507.546699 eV Core-core repulsion = 15704.386788 eV Total energy + Delta-G solvation = -2803.159911 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.64294 -39.10618 -36.96205 -34.80001 -33.72399 -31.99298 -31.73478 -27.74357 -26.33985 -24.90304 -24.33205 -23.47041 -21.41304 -21.11530 -19.22861 -18.80401 -18.30794 -17.23976 -16.67927 -16.24530 -15.98592 -15.93947 -15.42200 -15.33193 -14.79827 -14.59247 -14.19604 -14.14045 -13.76209 -13.46533 -13.18481 -12.60430 -12.49734 -12.27535 -12.20565 -12.09361 -12.02130 -11.68783 -11.45652 -11.41809 -10.76970 -10.58253 -10.02975 -9.05157 -8.97896 -8.63442 -8.17585 -5.48376 0.37379 0.81981 1.12708 1.30835 1.41206 1.49757 1.71371 2.40967 2.66107 3.04911 3.33953 3.73789 3.77810 3.88281 4.13170 4.22714 4.29241 4.46820 4.53958 4.57448 4.65076 4.70447 4.81966 4.93319 4.96166 5.00895 5.05532 5.07152 5.15819 5.35317 5.55205 5.61624 5.70227 5.86754 5.95373 6.12967 6.43149 6.90786 7.61615 8.02872 9.01964 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.034086 B = 0.004283 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.244187 B = 6536.056553 C = 6828.649093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.186 4.186 3 C 0.155 3.845 4 N -0.661 5.661 5 C 0.585 3.415 6 S -0.742 6.742 7 N -0.657 5.657 8 C 0.162 3.838 9 C -0.125 4.125 10 C 0.130 3.870 11 N -0.619 5.619 12 C -0.243 4.243 13 H 0.063 0.937 14 C -0.030 4.030 15 N -0.954 5.954 16 Si 0.935 3.065 17 H -0.282 1.282 18 H -0.310 1.310 19 H -0.265 1.265 20 C 0.144 3.856 21 C -0.125 4.125 22 H 0.098 0.902 23 H 0.124 0.876 24 H 0.135 0.865 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.417 0.583 28 H 0.416 0.584 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.026 0.974 34 H 0.261 0.739 35 H 0.034 0.966 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.214 -21.719 -11.880 26.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.204 4.204 3 C 0.032 3.968 4 N -0.291 5.291 5 C 0.220 3.780 6 S -0.619 6.619 7 N -0.286 5.286 8 C 0.057 3.943 9 C -0.166 4.166 10 C 0.004 3.996 11 N -0.344 5.344 12 C -0.373 4.373 13 H 0.081 0.919 14 C -0.225 4.225 15 N -0.600 5.600 16 Si 0.765 3.235 17 H -0.209 1.209 18 H -0.238 1.238 19 H -0.190 1.190 20 C 0.019 3.981 21 C -0.165 4.165 22 H 0.116 0.884 23 H 0.142 0.858 24 H 0.152 0.848 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.257 0.743 28 H 0.256 0.744 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.090 0.910 37 H 0.117 0.883 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.274 -20.681 -12.554 26.284 hybrid contribution -0.171 0.074 0.759 0.781 sum -10.445 -20.607 -11.796 25.940 Atomic orbital electron populations 1.24227 0.95696 1.03403 0.95681 1.22934 0.96341 0.97078 1.04079 1.20736 0.90943 0.97177 0.87962 1.44914 1.37348 1.16005 1.30866 1.21638 0.81251 0.89159 0.85985 1.93769 1.86057 1.31730 1.50330 1.45027 1.36803 1.21193 1.25588 1.21161 0.89188 0.83654 1.00297 1.22154 0.98638 0.96247 0.99551 1.21203 0.86838 0.95890 0.95657 1.44556 1.19984 1.42291 1.27541 1.18914 1.28092 0.94447 0.95828 0.91908 1.25795 1.00782 0.98358 0.97530 1.69938 1.53606 1.17591 1.18899 0.86102 0.77817 0.78066 0.81545 1.20911 1.23838 1.18962 1.21081 0.93503 0.87104 0.96402 1.22188 0.94812 0.99002 1.00467 0.88384 0.85835 0.84774 0.90824 0.89973 0.74297 0.74383 0.88828 0.92000 0.91616 0.93377 0.95644 0.92988 0.94792 0.91001 0.88265 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 14.32 67.78 0.97 -0.21 16 2 C -0.19 -1.59 9.63 25.65 0.25 -1.34 16 3 C 0.15 2.31 5.57 85.63 0.48 2.79 16 4 N -0.66 -9.60 5.55 -353.90 -1.97 -11.56 16 5 C 0.59 13.55 7.95 179.05 1.42 14.97 16 6 S -0.74 -26.15 26.57 -56.49 -1.50 -27.65 16 7 N -0.66 -13.33 5.08 -329.37 -1.67 -15.00 16 8 C 0.16 4.58 2.18 45.03 0.10 4.68 16 9 C -0.13 -4.44 5.60 30.68 0.17 -4.26 16 10 C 0.13 5.77 4.20 86.36 0.36 6.13 16 11 N -0.62 -28.60 2.77 -699.09 -1.94 -30.54 16 12 C -0.24 -13.58 10.03 84.03 0.84 -12.73 16 13 H 0.06 3.74 8.06 -2.91 -0.02 3.71 16 14 C -0.03 -1.75 5.23 84.86 0.44 -1.30 16 15 N -0.95 -60.14 13.97 21.65 0.30 -59.84 16 16 Si 0.93 48.43 24.34 68.60 1.67 50.10 16 17 H -0.28 -14.20 6.62 99.48 0.66 -13.54 16 18 H -0.31 -16.19 7.11 99.48 0.71 -15.48 16 19 H -0.26 -13.41 6.64 99.48 0.66 -12.75 16 20 C 0.14 5.12 6.52 86.37 0.56 5.69 16 21 C -0.13 -3.24 5.55 30.67 0.17 -3.07 16 22 H 0.10 0.88 7.84 -2.91 -0.02 0.86 16 23 H 0.12 0.53 8.06 -2.91 -0.02 0.50 16 24 H 0.13 0.67 8.06 -2.91 -0.02 0.64 16 25 H 0.07 1.39 7.64 -2.38 -0.02 1.37 16 26 H 0.08 1.48 7.99 -2.39 -0.02 1.46 16 27 H 0.42 2.99 8.48 -92.71 -0.79 2.21 16 28 H 0.42 5.19 8.62 -92.71 -0.80 4.39 16 29 H 0.09 3.14 6.82 -2.39 -0.02 3.13 16 30 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.07 2.43 7.48 -2.39 -0.02 2.41 16 32 H 0.05 2.39 4.50 -2.39 -0.01 2.37 16 33 H 0.03 1.17 7.07 -2.38 -0.02 1.15 16 34 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 35 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 2.50 7.93 -2.39 -0.02 2.49 16 37 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -76.26 314.84 0.05 -76.22 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -0.62 Total: 6.94 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 5.77 Total: 11.33 kcal Atomic # 7 Polarization: -111.66 SS G_CDS: -5.27 Total: -116.94 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 1.67 Total: 50.10 kcal Atomic # 16 Polarization: -26.15 SS G_CDS: -1.50 Total: -27.65 kcal Total: -76.26 0.05 -76.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730438908.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.100 kcal (2) G-P(sol) polarization free energy of solvation -76.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds