Wall clock time and date at job start Mon Mar 30 2020 01:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47015 * 2 1 4 4 C 1.52997 * 109.46923 * 240.00120 * 2 1 3 5 5 C 1.52996 * 109.47216 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47003 * 60.00266 * 5 4 2 7 7 C 1.52997 * 109.46917 * 299.99917 * 6 5 4 8 8 H 1.09003 * 109.47203 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47206 * 299.99834 * 7 6 5 10 10 O 1.21301 * 120.00051 * 105.95624 * 9 7 6 11 11 N 1.34776 * 120.00488 * 285.95728 * 9 7 6 12 12 C 1.37092 * 120.00456 * 175.61320 * 11 9 7 13 13 H 1.08010 * 119.99483 * 322.36846 * 12 11 9 14 14 C 1.38949 * 120.00391 * 142.37383 * 12 11 9 15 15 N 1.31411 * 120.00084 * 158.34145 * 14 12 11 16 16 Si 1.86802 * 119.99764 * 338.33724 * 14 12 11 17 17 H 1.48502 * 109.47027 * 95.34524 * 16 14 12 18 18 H 1.48500 * 109.47129 * 215.34582 * 16 14 12 19 19 H 1.48500 * 109.47115 * 335.34349 * 16 14 12 20 20 C 1.46504 * 119.99629 * 355.60857 * 11 9 7 21 21 C 1.50693 * 109.46907 * 95.65833 * 20 11 9 22 22 O 1.20824 * 120.00538 * 5.40395 * 21 20 11 23 23 O 1.34240 * 120.00233 * 185.67159 * 21 20 11 24 24 C 1.52998 * 109.47396 * 120.00033 * 2 1 3 25 25 H 1.09002 * 109.47015 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46838 * 299.99818 * 1 2 3 27 27 H 1.08996 * 109.47504 * 59.99441 * 1 2 3 28 28 H 1.09002 * 109.47048 * 59.99763 * 4 2 1 29 29 H 1.09002 * 109.47176 * 299.99781 * 4 2 1 30 30 H 1.08996 * 109.47581 * 300.00316 * 5 4 2 31 31 H 1.09002 * 109.47130 * 180.02562 * 5 4 2 32 32 H 1.09001 * 109.47176 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.47219 * 59.99917 * 6 5 4 34 34 H 0.96994 * 120.00024 * 180.02562 * 15 14 12 35 35 H 1.09006 * 109.46734 * 335.66183 * 20 11 9 36 36 H 1.08999 * 109.46960 * 215.66347 * 20 11 9 37 37 H 0.96698 * 117.00334 * 179.72775 * 23 21 20 38 38 H 1.09002 * 109.47066 * 59.99997 * 24 2 1 39 39 H 1.09005 * 109.47253 * 300.00426 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5699 -0.7207 -1.2496 6 6 4.0805 -1.4417 -0.0004 7 6 3.5705 -0.7205 1.2488 8 1 3.9339 -1.2344 2.1388 9 6 4.0724 0.7005 1.2486 10 8 3.3135 1.6117 0.9937 11 7 5.3646 0.9589 1.5315 12 6 5.8425 2.2408 1.4436 13 1 5.4973 2.8929 0.6548 14 6 6.7710 2.7011 2.3691 15 7 7.5401 3.7251 2.0746 16 14 6.9259 1.8644 4.0321 17 1 8.0163 0.8577 3.9800 18 1 7.2386 2.8796 5.0698 19 1 5.6459 1.1909 4.3684 20 6 6.2584 -0.1302 1.9331 21 6 7.0111 -0.6324 0.7281 22 8 6.8945 -0.0698 -0.3348 23 8 7.8072 -1.7080 0.8342 24 6 2.0401 -0.7212 1.2492 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.6766 -0.2074 -2.1392 29 1 1.6766 -1.7489 -1.2492 30 1 3.9330 0.3070 -1.2498 31 1 3.9332 -1.2341 -2.1399 32 1 5.1705 -1.4417 -0.0009 33 1 3.7175 -2.4695 -0.0002 34 1 8.1886 4.0463 2.7206 35 1 5.6713 -0.9435 2.3596 36 1 6.9660 0.2361 2.6769 37 1 8.2664 -1.9952 0.0331 38 1 1.6768 -1.7489 1.2492 39 1 1.6767 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736773358.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:32 Heat of formation + Delta-G solvation = -121.664768 kcal Electronic energy + Delta-G solvation = -22663.460194 eV Core-core repulsion = 19378.336161 eV Total energy + Delta-G solvation = -3285.124033 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.43209 -39.24800 -37.04360 -35.66114 -34.70234 -32.63552 -31.83959 -30.55257 -28.06107 -26.14925 -25.36470 -22.50179 -21.71313 -21.30200 -19.97641 -18.21079 -17.68784 -17.33465 -16.54464 -15.98817 -15.44965 -15.09449 -14.89470 -14.15966 -14.04081 -13.82242 -13.16790 -13.00852 -12.79823 -12.67960 -12.37595 -12.13719 -12.02047 -11.74720 -11.49935 -11.36116 -11.11809 -11.00378 -10.97295 -10.58090 -10.48643 -10.17707 -10.09145 -9.91482 -9.70234 -9.63931 -9.06843 -8.28516 -7.90708 -6.43696 -4.01555 2.71206 2.92856 3.12425 3.16478 3.23249 3.78794 4.05023 4.29210 4.90561 5.02049 5.04866 5.13368 5.30683 5.40668 5.51511 5.58336 5.62262 5.72804 5.76326 5.82836 5.90521 5.93474 5.98114 6.15664 6.16603 6.18957 6.25832 6.32854 6.57790 6.63786 6.71726 6.76068 6.91215 7.16293 7.44754 8.23598 8.35278 8.45293 8.90652 9.22688 9.65704 10.68492 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020609 B = 0.008285 C = 0.006968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.312558 B = 3378.660346 C = 4017.131286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 H 0.122 0.878 4 C -0.106 4.106 5 C -0.118 4.118 6 C -0.108 4.108 7 C -0.115 4.115 8 H 0.081 0.919 9 C 0.487 3.513 10 O -0.539 6.539 11 N -0.451 5.451 12 C -0.306 4.306 13 H 0.108 0.892 14 C 0.058 3.942 15 N -0.857 5.857 16 Si 0.859 3.141 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.259 1.259 20 C 0.096 3.904 21 C 0.455 3.545 22 O -0.480 6.480 23 O -0.530 6.530 24 C -0.084 4.084 25 H 0.042 0.958 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.274 0.726 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.400 0.600 38 H 0.056 0.944 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.998 -13.404 -0.633 14.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.137 4.137 3 H 0.139 0.861 4 C -0.144 4.144 5 C -0.155 4.155 6 C -0.146 4.146 7 C -0.137 4.137 8 H 0.099 0.901 9 C 0.277 3.723 10 O -0.419 6.419 11 N -0.173 5.173 12 C -0.433 4.433 13 H 0.125 0.875 14 C -0.148 4.148 15 N -0.493 5.493 16 Si 0.686 3.314 17 H -0.199 1.199 18 H -0.207 1.207 19 H -0.183 1.183 20 C -0.030 4.030 21 C 0.294 3.706 22 O -0.365 6.365 23 O -0.342 6.342 24 C -0.122 4.122 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.258 0.742 38 H 0.075 0.925 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.491 -12.458 -0.665 13.630 hybrid contribution 0.866 -0.653 0.433 1.168 sum -4.625 -13.111 -0.232 13.905 Atomic orbital electron populations 1.21783 0.96410 1.00424 1.01153 1.21672 0.94287 1.04234 0.93476 0.86057 1.21527 0.95380 0.99478 0.97985 1.21468 0.95598 1.01852 0.96584 1.21549 1.00418 0.98452 0.94192 1.21432 0.97827 0.95392 0.99062 0.90130 1.20162 0.81538 0.89970 0.80651 1.90407 1.53914 1.47110 1.50472 1.43449 1.05650 1.05852 1.62340 1.19010 1.23938 0.87018 1.13309 0.87485 1.25364 0.95526 0.96159 0.97750 1.69754 1.18670 1.25951 1.34925 0.87208 0.78996 0.79603 0.85553 1.19948 1.20655 1.18275 1.21630 0.95178 0.93120 0.93051 1.24465 0.77161 0.77001 0.91929 1.90738 1.60739 1.55305 1.29676 1.84585 1.58596 1.46464 1.44525 1.21290 0.92521 0.99508 0.98896 0.93850 0.93055 0.93295 0.92667 0.93145 0.90904 0.92708 0.92146 0.91828 0.91519 0.87556 0.87884 0.74208 0.92527 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.19 37.16 0.34 -1.55 16 2 C -0.12 -1.92 2.43 -90.62 -0.22 -2.14 16 3 H 0.12 2.45 5.05 -51.93 -0.26 2.19 16 4 C -0.11 -1.58 5.20 -26.73 -0.14 -1.72 16 5 C -0.12 -1.97 5.70 -26.73 -0.15 -2.12 16 6 C -0.11 -1.71 5.35 -26.73 -0.14 -1.86 16 7 C -0.12 -1.97 2.22 -91.75 -0.20 -2.18 16 8 H 0.08 1.20 6.49 -51.93 -0.34 0.86 16 9 C 0.49 10.93 5.50 -10.99 -0.06 10.87 16 10 O -0.54 -13.66 13.13 5.54 0.07 -13.59 16 11 N -0.45 -10.72 1.75 -116.09 -0.20 -10.92 16 12 C -0.31 -8.59 9.08 -14.94 -0.14 -8.73 16 13 H 0.11 3.43 7.96 -52.48 -0.42 3.01 16 14 C 0.06 1.59 5.34 -17.47 -0.09 1.50 16 15 N -0.86 -24.75 13.96 55.50 0.77 -23.98 16 16 Si 0.86 19.58 25.00 -169.99 -4.25 15.33 16 17 H -0.27 -5.74 6.69 56.52 0.38 -5.36 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 20 C 0.10 1.91 4.60 -5.20 -0.02 1.89 16 21 C 0.46 8.67 6.02 36.00 0.22 8.89 16 22 O -0.48 -10.77 16.22 -18.75 -0.30 -11.07 16 23 O -0.53 -7.66 13.42 -39.28 -0.53 -8.19 16 24 C -0.08 -1.31 4.50 -26.71 -0.12 -1.43 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.51 7.19 -51.93 -0.37 1.14 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 1.01 3.96 -51.93 -0.21 0.80 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.11 1.69 5.90 -51.93 -0.31 1.38 16 36 H 0.10 2.14 2.99 -51.93 -0.16 1.98 16 37 H 0.40 3.97 9.10 45.56 0.41 4.39 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 299.75 15.07 4.52 4.52 Total: -1.00 -32.28 299.75 -5.26 -37.54 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -4.61 Total: 8.96 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -0.73 Total: 1.41 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.57 Total: -34.90 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -0.76 Total: -32.85 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.25 Total: 15.33 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.28 -5.26 -37.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736773358.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.124 kcal (2) G-P(sol) polarization free energy of solvation -32.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds