Wall clock time and date at job start Mon Mar 30 2020 01:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47015 * 2 1 4 4 C 1.52997 * 109.46923 * 240.00120 * 2 1 3 5 5 C 1.52996 * 109.47216 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47003 * 60.00266 * 5 4 2 7 7 C 1.52997 * 109.46917 * 299.99917 * 6 5 4 8 8 H 1.09003 * 109.47203 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47206 * 299.99834 * 7 6 5 10 10 O 1.21301 * 120.00051 * 105.95624 * 9 7 6 11 11 N 1.34776 * 120.00488 * 285.95728 * 9 7 6 12 12 C 1.37092 * 120.00456 * 175.61320 * 11 9 7 13 13 H 1.08010 * 119.99483 * 322.36846 * 12 11 9 14 14 C 1.38949 * 120.00391 * 142.37383 * 12 11 9 15 15 N 1.31411 * 120.00084 * 158.34145 * 14 12 11 16 16 Si 1.86802 * 119.99764 * 338.33724 * 14 12 11 17 17 H 1.48502 * 109.47027 * 95.34524 * 16 14 12 18 18 H 1.48500 * 109.47129 * 215.34582 * 16 14 12 19 19 H 1.48500 * 109.47115 * 335.34349 * 16 14 12 20 20 C 1.46504 * 119.99629 * 355.60857 * 11 9 7 21 21 C 1.50693 * 109.46907 * 95.65833 * 20 11 9 22 22 O 1.20824 * 120.00538 * 5.40395 * 21 20 11 23 23 O 1.34240 * 120.00233 * 185.67159 * 21 20 11 24 24 C 1.52998 * 109.47396 * 120.00033 * 2 1 3 25 25 H 1.09002 * 109.47015 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46838 * 299.99818 * 1 2 3 27 27 H 1.08996 * 109.47504 * 59.99441 * 1 2 3 28 28 H 1.09002 * 109.47048 * 59.99763 * 4 2 1 29 29 H 1.09002 * 109.47176 * 299.99781 * 4 2 1 30 30 H 1.08996 * 109.47581 * 300.00316 * 5 4 2 31 31 H 1.09002 * 109.47130 * 180.02562 * 5 4 2 32 32 H 1.09001 * 109.47176 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.47219 * 59.99917 * 6 5 4 34 34 H 0.96994 * 120.00024 * 180.02562 * 15 14 12 35 35 H 1.09006 * 109.46734 * 335.66183 * 20 11 9 36 36 H 1.08999 * 109.46960 * 215.66347 * 20 11 9 37 37 H 0.96698 * 117.00334 * 179.72775 * 23 21 20 38 38 H 1.09002 * 109.47066 * 59.99997 * 24 2 1 39 39 H 1.09005 * 109.47253 * 300.00426 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5699 -0.7207 -1.2496 6 6 4.0805 -1.4417 -0.0004 7 6 3.5705 -0.7205 1.2488 8 1 3.9339 -1.2344 2.1388 9 6 4.0724 0.7005 1.2486 10 8 3.3135 1.6117 0.9937 11 7 5.3646 0.9589 1.5315 12 6 5.8425 2.2408 1.4436 13 1 5.4973 2.8929 0.6548 14 6 6.7710 2.7011 2.3691 15 7 7.5401 3.7251 2.0746 16 14 6.9259 1.8644 4.0321 17 1 8.0163 0.8577 3.9800 18 1 7.2386 2.8796 5.0698 19 1 5.6459 1.1909 4.3684 20 6 6.2584 -0.1302 1.9331 21 6 7.0111 -0.6324 0.7281 22 8 6.8945 -0.0698 -0.3348 23 8 7.8072 -1.7080 0.8342 24 6 2.0401 -0.7212 1.2492 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.6766 -0.2074 -2.1392 29 1 1.6766 -1.7489 -1.2492 30 1 3.9330 0.3070 -1.2498 31 1 3.9332 -1.2341 -2.1399 32 1 5.1705 -1.4417 -0.0009 33 1 3.7175 -2.4695 -0.0002 34 1 8.1886 4.0463 2.7206 35 1 5.6713 -0.9435 2.3596 36 1 6.9660 0.2361 2.6769 37 1 8.2664 -1.9952 0.0331 38 1 1.6768 -1.7489 1.2492 39 1 1.6767 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736773358.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:32 Heat of formation + Delta-G solvation = -145.092119 kcal Electronic energy + Delta-G solvation = -22664.476080 eV Core-core repulsion = 19378.336161 eV Total energy + Delta-G solvation = -3286.139919 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.97247 -40.71109 -38.53578 -37.11659 -36.46844 -34.38715 -33.37086 -31.87723 -29.71356 -27.50033 -27.03129 -23.99134 -23.18910 -22.63779 -21.32592 -19.86791 -19.15404 -19.12660 -18.19060 -17.50473 -17.02135 -16.74240 -16.28130 -15.62808 -15.52330 -15.24285 -14.72717 -14.59327 -14.34473 -14.22338 -13.93624 -13.65568 -13.18604 -13.06345 -12.82400 -12.78079 -12.71572 -12.39796 -12.31045 -12.27911 -11.90037 -11.80572 -11.68993 -11.44601 -10.99113 -10.91666 -10.86105 -9.99070 -9.81227 -8.52146 -6.16396 1.13299 1.20645 1.32173 1.44232 1.70317 2.11327 2.18579 2.65392 2.99902 3.63579 3.76261 3.82287 3.88174 4.04406 4.11055 4.32158 4.33520 4.46629 4.51512 4.57824 4.68992 4.71537 4.87726 4.94388 5.00272 5.02883 5.08694 5.16703 5.34341 5.38756 5.45373 5.51928 5.56866 5.66797 5.83507 6.07063 6.47793 6.92786 7.05932 7.23734 7.83281 8.66027 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020609 B = 0.008285 C = 0.006968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.312558 B = 3378.660346 C = 4017.131286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.125 4.125 3 H 0.068 0.932 4 C -0.099 4.099 5 C -0.118 4.118 6 C -0.105 4.105 7 C -0.110 4.110 8 H 0.117 0.883 9 C 0.478 3.522 10 O -0.584 6.584 11 N -0.465 5.465 12 C -0.320 4.320 13 H 0.034 0.966 14 C 0.003 3.997 15 N -0.913 5.913 16 Si 0.934 3.066 17 H -0.233 1.233 18 H -0.283 1.283 19 H -0.241 1.241 20 C 0.088 3.912 21 C 0.466 3.534 22 O -0.527 6.527 23 O -0.506 6.506 24 C -0.083 4.083 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.087 0.913 30 H 0.013 0.987 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.111 0.889 34 H 0.280 0.720 35 H 0.157 0.843 36 H 0.100 0.900 37 H 0.424 0.576 38 H 0.101 0.899 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.543 -18.460 1.294 19.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.143 4.143 3 H 0.086 0.914 4 C -0.137 4.137 5 C -0.156 4.156 6 C -0.142 4.142 7 C -0.131 4.131 8 H 0.135 0.865 9 C 0.270 3.730 10 O -0.466 6.466 11 N -0.188 5.188 12 C -0.449 4.449 13 H 0.052 0.948 14 C -0.198 4.198 15 N -0.550 5.550 16 Si 0.756 3.244 17 H -0.158 1.158 18 H -0.209 1.209 19 H -0.164 1.164 20 C -0.037 4.037 21 C 0.307 3.693 22 O -0.415 6.415 23 O -0.320 6.320 24 C -0.120 4.120 25 H 0.091 0.909 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.031 0.969 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.129 0.871 34 H 0.089 0.911 35 H 0.174 0.826 36 H 0.117 0.883 37 H 0.286 0.714 38 H 0.119 0.881 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.014 -17.569 1.251 18.612 hybrid contribution 1.032 0.957 -0.329 1.445 sum -4.982 -16.612 0.922 17.368 Atomic orbital electron populations 1.21714 0.94261 1.02170 1.00963 1.21571 0.96172 1.01624 0.94924 0.91395 1.21493 0.93757 1.01251 0.97171 1.21447 0.97153 0.98689 0.98296 1.21594 0.99894 1.00303 0.92409 1.21555 0.98995 0.91241 1.01326 0.86490 1.21379 0.80820 0.92348 0.78500 1.90419 1.55130 1.49417 1.51616 1.43478 1.06967 1.05242 1.63093 1.18472 1.24812 0.89232 1.12346 0.94802 1.26253 0.94391 0.97190 1.01984 1.69899 1.19952 1.28537 1.36656 0.86034 0.80897 0.79264 0.78220 1.15835 1.20917 1.16359 1.21800 0.95445 0.93142 0.93272 1.24142 0.77031 0.77315 0.90836 1.90754 1.62388 1.57060 1.31313 1.84488 1.57494 1.44159 1.45843 1.21352 0.91222 1.01667 0.97792 0.90938 0.93568 0.93365 0.93121 0.89461 0.96853 0.91393 0.93118 0.87075 0.91088 0.82559 0.88250 0.71414 0.88082 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 9.19 71.98 0.66 -2.69 16 2 C -0.12 -3.92 2.43 -10.79 -0.03 -3.95 16 3 H 0.07 2.93 5.05 -2.39 -0.01 2.91 16 4 C -0.10 -2.77 5.20 30.59 0.16 -2.61 16 5 C -0.12 -3.89 5.70 30.59 0.17 -3.71 16 6 C -0.10 -2.94 5.35 30.60 0.16 -2.78 16 7 C -0.11 -3.43 2.22 -11.53 -0.03 -3.46 16 8 H 0.12 2.80 6.49 -2.39 -0.02 2.79 16 9 C 0.48 21.87 5.50 87.66 0.48 22.35 16 10 O -0.58 -31.77 13.13 -3.09 -0.04 -31.81 16 11 N -0.47 -22.53 1.75 -639.59 -1.12 -23.65 16 12 C -0.32 -19.28 9.08 84.04 0.76 -18.52 16 13 H 0.03 2.45 7.96 -2.91 -0.02 2.43 16 14 C 0.00 0.18 5.34 84.93 0.45 0.64 16 15 N -0.91 -55.70 13.96 21.66 0.30 -55.39 16 16 Si 0.93 39.96 25.00 68.60 1.71 41.67 16 17 H -0.23 -8.53 6.69 99.48 0.67 -7.86 16 18 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.24 -9.52 7.11 99.48 0.71 -8.81 16 20 C 0.09 3.28 4.60 85.63 0.39 3.68 16 21 C 0.47 16.83 6.02 71.23 0.43 17.26 16 22 O -0.53 -23.97 16.22 21.97 0.36 -23.62 16 23 O -0.51 -12.58 13.42 -51.51 -0.69 -13.27 16 24 C -0.08 -2.30 4.50 30.61 0.14 -2.17 16 25 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.01 0.57 7.19 -2.39 -0.02 0.55 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.05 1.54 3.96 -2.39 -0.01 1.53 16 33 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 35 H 0.16 4.13 5.90 -2.38 -0.01 4.11 16 36 H 0.10 3.78 2.99 -2.39 -0.01 3.77 16 37 H 0.42 6.76 9.10 -74.06 -0.67 6.09 16 38 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -81.24 299.75 4.65 -76.59 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.36 Total: 25.45 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 3.77 Total: 4.04 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -0.82 Total: -79.05 kcal Atomic # 8 Polarization: -68.33 SS G_CDS: -0.38 Total: -68.70 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 1.71 Total: 41.67 kcal Total: -81.24 4.65 -76.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736773358.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.501 kcal (2) G-P(sol) polarization free energy of solvation -81.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds