Wall clock time and date at job start Mon Mar 30 2020 01:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34226 * 117.00266 * 2 1 4 4 O 1.20831 * 119.99565 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00607 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.47837 * 180.02562 * 5 3 2 7 7 C 1.37098 * 119.99989 * 270.00591 * 6 5 3 8 8 H 1.07997 * 120.00399 * 142.88781 * 7 6 5 9 9 C 1.38950 * 119.99706 * 322.88765 * 7 6 5 10 10 N 1.31415 * 119.99991 * 160.96418 * 9 7 6 11 11 Si 1.86801 * 120.00010 * 340.95477 * 9 7 6 12 12 H 1.48505 * 109.46670 * 92.90059 * 11 9 7 13 13 H 1.48500 * 109.47150 * 212.89641 * 11 9 7 14 14 H 1.48494 * 109.47318 * 332.90267 * 11 9 7 15 15 C 1.34780 * 120.00041 * 89.99696 * 6 5 3 16 16 O 1.21295 * 119.99542 * 355.69877 * 15 6 5 17 17 C 1.50699 * 119.99893 * 175.70064 * 15 6 5 18 18 C 1.52998 * 109.46867 * 186.04044 * 17 15 6 19 19 H 1.09004 * 109.47115 * 305.79621 * 18 17 15 20 20 C 1.52998 * 109.47289 * 65.79827 * 18 17 15 21 21 C 1.52997 * 109.47313 * 185.80028 * 18 17 15 22 22 C 1.53001 * 117.50374 * 134.90046 * 21 18 17 23 23 C 1.52999 * 117.49809 * 66.27676 * 21 18 17 24 24 H 1.09007 * 109.47137 * 299.99855 * 1 2 3 25 25 H 1.08994 * 109.47295 * 60.00210 * 1 2 3 26 26 H 1.09010 * 109.47347 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47334 * 59.99805 * 5 3 2 28 28 H 1.09005 * 109.47518 * 300.00387 * 5 3 2 29 29 H 0.96999 * 119.99915 * 179.97438 * 10 9 7 30 30 H 1.08998 * 109.47078 * 66.04307 * 17 15 6 31 31 H 1.09001 * 109.46753 * 306.03646 * 17 15 6 32 32 H 1.09004 * 109.47209 * 59.99852 * 20 18 17 33 33 H 1.09002 * 109.47358 * 299.99909 * 20 18 17 34 34 H 1.09002 * 109.47596 * 179.97438 * 20 18 17 35 35 H 1.08999 * 115.54756 * 280.61546 * 21 18 17 36 36 H 1.09000 * 117.49282 * 0.02562 * 22 21 18 37 37 H 1.08995 * 117.49633 * 145.01769 * 22 21 18 38 38 H 1.08996 * 117.50317 * 214.98065 * 23 21 18 39 39 H 1.08997 * 117.50108 * 0.02562 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.1764 3.3374 -1.1860 8 1 3.8951 4.3758 -1.2806 9 6 4.7358 2.6679 -2.2675 10 7 4.5879 3.1444 -3.4832 11 14 5.6983 1.0906 -1.9932 12 1 4.7898 -0.0751 -2.1382 13 1 6.7893 0.9957 -2.9962 14 1 6.2808 1.0973 -0.6273 15 6 4.1723 3.3257 1.1685 16 8 3.9250 2.7686 2.2172 17 6 4.6926 4.7400 1.1709 18 6 4.9594 5.1829 2.6109 19 1 4.0591 5.0382 3.2082 20 6 6.1002 4.3493 3.1978 21 6 5.3488 6.6623 2.6257 22 6 4.6945 7.5547 3.6823 23 6 4.2811 7.6781 2.2144 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.9564 0.7806 -0.8891 28 1 3.9557 0.7809 0.8908 29 1 4.9788 2.6773 -4.2381 30 1 3.9524 5.4002 0.7190 31 1 5.6192 4.7872 0.5987 32 1 7.0005 4.4939 2.6005 33 1 5.8227 3.2952 3.1873 34 1 6.2906 4.6650 4.2236 35 1 6.3815 6.8793 2.3527 36 1 3.9868 7.0876 4.3672 37 1 5.2969 8.3588 4.1049 38 1 4.6114 8.5635 1.6713 39 1 3.3011 7.2923 1.9337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737860662.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:02 Heat of formation + Delta-G solvation = -90.768517 kcal Electronic energy + Delta-G solvation = -21532.400243 eV Core-core repulsion = 18248.615972 eV Total energy + Delta-G solvation = -3283.784271 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.02585 -38.97002 -37.48009 -35.89983 -34.89231 -32.66451 -32.03282 -29.30772 -27.41464 -26.14468 -24.79013 -22.98008 -22.10549 -20.93010 -19.58898 -18.88530 -17.46739 -17.08794 -16.56328 -15.82416 -15.56754 -15.36720 -15.09611 -14.44280 -14.36283 -13.60163 -13.27677 -13.15583 -12.78769 -12.65818 -12.42621 -12.13403 -11.83588 -11.72710 -11.49051 -11.34904 -11.03785 -10.82760 -10.68993 -10.50252 -10.33566 -10.29879 -10.09515 -9.89872 -9.88692 -9.61739 -9.28265 -8.66184 -8.00081 -6.55688 -4.18001 2.86151 2.93311 3.03328 3.14976 3.18264 3.73278 3.97630 4.02065 4.32227 4.85207 4.96115 5.16347 5.18730 5.36982 5.44102 5.45289 5.48910 5.65672 5.75287 5.75935 5.79608 5.81697 5.84579 5.99233 6.13792 6.16814 6.31164 6.32917 6.41335 6.47576 6.62173 6.84953 6.85805 6.89786 7.14522 7.96729 8.16385 8.41252 8.84385 9.20523 9.53549 10.55049 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.016021 B = 0.006890 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.255384 B = 4062.838831 C = 4904.971627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.371 6.371 3 C 0.449 3.551 4 O -0.488 6.488 5 C 0.105 3.895 6 N -0.452 5.452 7 C -0.336 4.336 8 H 0.108 0.892 9 C 0.063 3.937 10 N -0.855 5.855 11 Si 0.865 3.135 12 H -0.269 1.269 13 H -0.281 1.281 14 H -0.256 1.256 15 C 0.495 3.505 16 O -0.591 6.591 17 C -0.109 4.109 18 C -0.047 4.047 19 H 0.074 0.926 20 C -0.143 4.143 21 C -0.141 4.141 22 C -0.184 4.184 23 C -0.181 4.181 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.111 0.889 29 H 0.277 0.723 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.045 0.955 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.090 0.021 7.267 7.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.288 6.288 3 C 0.289 3.711 4 O -0.372 6.372 5 C -0.020 4.020 6 N -0.173 5.173 7 C -0.463 4.463 8 H 0.126 0.874 9 C -0.144 4.144 10 N -0.490 5.490 11 Si 0.692 3.308 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.180 1.180 15 C 0.286 3.714 16 O -0.476 6.476 17 C -0.149 4.149 18 C -0.065 4.065 19 H 0.092 0.908 20 C -0.201 4.201 21 C -0.160 4.160 22 C -0.221 4.221 23 C -0.218 4.218 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.112 0.888 27 H 0.120 0.880 28 H 0.129 0.871 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.227 0.061 7.554 7.558 hybrid contribution 0.132 -0.715 -0.400 0.830 sum -0.095 -0.655 7.154 7.185 Atomic orbital electron populations 1.23130 0.77613 1.02794 1.02240 1.86522 1.22643 1.34640 1.84975 1.24764 0.92843 0.81180 0.72280 1.90610 1.66549 1.36250 1.43836 1.21428 0.86919 0.88918 1.04728 1.43495 1.58639 1.08329 1.06859 1.19116 1.41692 0.98697 0.86836 0.87408 1.25380 0.95992 0.98233 0.94825 1.69733 1.40619 1.40394 0.98206 0.87135 0.80807 0.83093 0.79729 1.19655 1.20786 1.17985 1.20549 0.79184 0.89074 0.82560 1.90524 1.55933 1.69412 1.31692 1.21381 1.03044 0.93628 0.96799 1.20503 0.99202 0.90852 0.95986 0.90798 1.21823 0.97294 1.01536 0.99402 1.22383 0.97683 0.92472 1.03422 1.22964 1.04087 1.02738 0.92311 1.22926 1.00298 1.01283 0.97298 0.92363 0.92204 0.88756 0.87965 0.87090 0.91287 0.89593 0.88955 0.93425 0.90964 0.93587 0.88031 0.89060 0.89384 0.89093 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.56 101.05 1.07 1.60 16 2 O -0.37 -7.08 10.56 -39.25 -0.41 -7.49 16 3 C 0.45 10.12 8.02 36.00 0.29 10.41 16 4 O -0.49 -12.28 16.18 -18.75 -0.30 -12.58 16 5 C 0.11 2.37 4.75 -5.20 -0.02 2.34 16 6 N -0.45 -10.93 1.69 -116.10 -0.20 -11.13 16 7 C -0.34 -8.70 9.00 -14.93 -0.13 -8.84 16 8 H 0.11 2.95 7.40 -52.49 -0.39 2.57 16 9 C 0.06 1.64 5.36 -17.47 -0.09 1.54 16 10 N -0.85 -23.21 13.96 55.50 0.77 -22.43 16 11 Si 0.87 19.24 24.88 -169.99 -4.23 15.01 16 12 H -0.27 -5.73 6.61 56.52 0.37 -5.35 16 13 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 14 H -0.26 -5.59 7.11 56.52 0.40 -5.18 16 15 C 0.49 11.38 7.23 -10.98 -0.08 11.30 16 16 O -0.59 -14.26 13.88 5.54 0.08 -14.18 16 17 C -0.11 -2.11 3.82 -27.88 -0.11 -2.22 16 18 C -0.05 -0.78 2.13 -90.62 -0.19 -0.97 16 19 H 0.07 1.34 7.65 -51.93 -0.40 0.94 16 20 C -0.14 -2.30 8.95 37.16 0.33 -1.97 16 21 C -0.14 -1.98 5.06 -90.62 -0.46 -2.44 16 22 C -0.18 -2.28 10.18 -26.73 -0.27 -2.55 16 23 C -0.18 -2.40 9.75 -26.73 -0.26 -2.66 16 24 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 25 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 26 H 0.09 1.02 8.14 -51.92 -0.42 0.59 16 27 H 0.10 2.28 2.88 -51.93 -0.15 2.13 16 28 H 0.11 2.30 7.48 -51.93 -0.39 1.91 16 29 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.09 1.68 7.27 -51.93 -0.38 1.30 16 31 H 0.09 1.77 8.00 -51.93 -0.42 1.35 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.33 6.24 -51.93 -0.32 1.00 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.09 1.13 8.09 -51.93 -0.42 0.71 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.09 1.34 7.99 -51.93 -0.41 0.93 16 LS Contribution 323.22 15.07 4.87 4.87 Total: -1.00 -29.96 323.22 -5.18 -35.13 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -5.82 Total: 7.25 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 0.06 Total: 5.56 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.58 Total: -33.56 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -0.64 Total: -34.26 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.23 Total: 15.01 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.96 -5.18 -35.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737860662.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.636 kcal (2) G-P(sol) polarization free energy of solvation -29.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds