Wall clock time and date at job start Mon Mar 30 2020 01:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34226 * 117.00266 * 2 1 4 4 O 1.20831 * 119.99565 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00607 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.47837 * 180.02562 * 5 3 2 7 7 C 1.37098 * 119.99989 * 270.00591 * 6 5 3 8 8 H 1.07997 * 120.00399 * 142.88781 * 7 6 5 9 9 C 1.38950 * 119.99706 * 322.88765 * 7 6 5 10 10 N 1.31415 * 119.99991 * 160.96418 * 9 7 6 11 11 Si 1.86801 * 120.00010 * 340.95477 * 9 7 6 12 12 H 1.48505 * 109.46670 * 92.90059 * 11 9 7 13 13 H 1.48500 * 109.47150 * 212.89641 * 11 9 7 14 14 H 1.48494 * 109.47318 * 332.90267 * 11 9 7 15 15 C 1.34780 * 120.00041 * 89.99696 * 6 5 3 16 16 O 1.21295 * 119.99542 * 355.69877 * 15 6 5 17 17 C 1.50699 * 119.99893 * 175.70064 * 15 6 5 18 18 C 1.52998 * 109.46867 * 186.04044 * 17 15 6 19 19 H 1.09004 * 109.47115 * 305.79621 * 18 17 15 20 20 C 1.52998 * 109.47289 * 65.79827 * 18 17 15 21 21 C 1.52997 * 109.47313 * 185.80028 * 18 17 15 22 22 C 1.53001 * 117.50374 * 134.90046 * 21 18 17 23 23 C 1.52999 * 117.49809 * 66.27676 * 21 18 17 24 24 H 1.09007 * 109.47137 * 299.99855 * 1 2 3 25 25 H 1.08994 * 109.47295 * 60.00210 * 1 2 3 26 26 H 1.09010 * 109.47347 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47334 * 59.99805 * 5 3 2 28 28 H 1.09005 * 109.47518 * 300.00387 * 5 3 2 29 29 H 0.96999 * 119.99915 * 179.97438 * 10 9 7 30 30 H 1.08998 * 109.47078 * 66.04307 * 17 15 6 31 31 H 1.09001 * 109.46753 * 306.03646 * 17 15 6 32 32 H 1.09004 * 109.47209 * 59.99852 * 20 18 17 33 33 H 1.09002 * 109.47358 * 299.99909 * 20 18 17 34 34 H 1.09002 * 109.47596 * 179.97438 * 20 18 17 35 35 H 1.08999 * 115.54756 * 280.61546 * 21 18 17 36 36 H 1.09000 * 117.49282 * 0.02562 * 22 21 18 37 37 H 1.08995 * 117.49633 * 145.01769 * 22 21 18 38 38 H 1.08996 * 117.50317 * 214.98065 * 23 21 18 39 39 H 1.08997 * 117.50108 * 0.02562 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.1764 3.3374 -1.1860 8 1 3.8951 4.3758 -1.2806 9 6 4.7358 2.6679 -2.2675 10 7 4.5879 3.1444 -3.4832 11 14 5.6983 1.0906 -1.9932 12 1 4.7898 -0.0751 -2.1382 13 1 6.7893 0.9957 -2.9962 14 1 6.2808 1.0973 -0.6273 15 6 4.1723 3.3257 1.1685 16 8 3.9250 2.7686 2.2172 17 6 4.6926 4.7400 1.1709 18 6 4.9594 5.1829 2.6109 19 1 4.0591 5.0382 3.2082 20 6 6.1002 4.3493 3.1978 21 6 5.3488 6.6623 2.6257 22 6 4.6945 7.5547 3.6823 23 6 4.2811 7.6781 2.2144 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.9564 0.7806 -0.8891 28 1 3.9557 0.7809 0.8908 29 1 4.9788 2.6773 -4.2381 30 1 3.9524 5.4002 0.7190 31 1 5.6192 4.7872 0.5987 32 1 7.0005 4.4939 2.6005 33 1 5.8227 3.2952 3.1873 34 1 6.2906 4.6650 4.2236 35 1 6.3815 6.8793 2.3527 36 1 3.9868 7.0876 4.3672 37 1 5.2969 8.3588 4.1049 38 1 4.6114 8.5635 1.6713 39 1 3.3011 7.2923 1.9337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737860662.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:01 Heat of formation + Delta-G solvation = -107.728876 kcal Electronic energy + Delta-G solvation = -21533.135699 eV Core-core repulsion = 18248.615972 eV Total energy + Delta-G solvation = -3284.519727 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.76527 -40.64719 -38.75907 -37.57593 -36.75099 -34.13085 -33.92300 -30.96521 -28.82936 -27.71051 -26.64518 -24.28433 -23.13641 -22.55996 -21.10915 -20.53220 -19.22180 -18.86080 -18.30384 -17.46464 -17.15969 -17.05996 -16.48999 -15.98272 -15.91309 -15.19378 -14.81654 -14.70829 -14.46776 -14.22999 -13.83530 -13.78231 -13.50003 -13.14366 -13.00223 -12.73591 -12.42577 -12.36905 -12.10981 -11.99770 -11.89962 -11.85002 -11.71122 -11.64440 -11.16708 -11.02362 -10.79847 -10.46795 -9.92929 -8.53855 -6.20924 1.09686 1.16824 1.30921 1.41084 1.48069 1.95438 2.13533 2.51647 2.91793 3.01461 3.73995 3.84860 3.90795 3.97367 4.05687 4.10798 4.23776 4.27045 4.28217 4.37718 4.48531 4.61352 4.65301 4.70364 4.83514 4.92553 4.99304 5.06940 5.16478 5.22358 5.25745 5.29194 5.32128 5.47693 5.58040 6.01728 6.13947 6.69461 6.88070 7.27142 7.64544 8.60427 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.016021 B = 0.006890 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.255384 B = 4062.838831 C = 4904.971627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.450 3.550 4 O -0.524 6.524 5 C 0.097 3.903 6 N -0.463 5.463 7 C -0.339 4.339 8 H 0.078 0.922 9 C 0.024 3.976 10 N -0.895 5.895 11 Si 0.918 3.082 12 H -0.250 1.250 13 H -0.275 1.275 14 H -0.249 1.249 15 C 0.488 3.512 16 O -0.603 6.603 17 C -0.104 4.104 18 C -0.040 4.040 19 H 0.055 0.945 20 C -0.138 4.138 21 C -0.151 4.151 22 C -0.166 4.166 23 C -0.189 4.189 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.142 0.858 27 H 0.107 0.893 28 H 0.129 0.871 29 H 0.282 0.718 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.849 -0.806 8.281 8.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.292 3.708 4 O -0.412 6.412 5 C -0.028 4.028 6 N -0.184 5.184 7 C -0.467 4.467 8 H 0.096 0.904 9 C -0.181 4.181 10 N -0.531 5.531 11 Si 0.741 3.259 12 H -0.176 1.176 13 H -0.201 1.201 14 H -0.172 1.172 15 C 0.280 3.720 16 O -0.489 6.489 17 C -0.143 4.143 18 C -0.059 4.059 19 H 0.073 0.927 20 C -0.196 4.196 21 C -0.169 4.169 22 C -0.203 4.203 23 C -0.225 4.225 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.160 0.840 27 H 0.125 0.875 28 H 0.146 0.854 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.134 0.866 36 H 0.107 0.893 37 H 0.131 0.869 38 H 0.125 0.875 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.520 -0.791 8.579 8.631 hybrid contribution -0.237 -0.476 -0.695 0.875 sum 0.284 -1.267 7.883 7.990 Atomic orbital electron populations 1.23563 0.74894 1.05921 1.02167 1.86489 1.25174 1.32444 1.84108 1.24713 0.92982 0.81606 0.71490 1.90595 1.67300 1.37607 1.45727 1.21560 0.87394 0.88166 1.05699 1.43566 1.59266 1.09062 1.06526 1.18881 1.42131 0.97920 0.87746 0.90438 1.25988 0.96350 1.01535 0.94182 1.69815 1.41784 1.42388 0.99117 0.86279 0.79763 0.79808 0.80004 1.17619 1.20124 1.17248 1.21161 0.78564 0.90144 0.82089 1.90503 1.56388 1.70042 1.31945 1.21404 1.02523 0.91455 0.98921 1.20420 0.98831 0.93111 0.93552 0.92683 1.21762 0.97247 0.99650 1.00906 1.22312 0.98528 0.90649 1.05390 1.23043 1.03384 1.02315 0.91554 1.22970 0.99333 1.01562 0.98685 0.92294 0.92546 0.84000 0.87540 0.85367 0.90781 0.90431 0.88780 0.92282 0.93616 0.91469 0.86597 0.89319 0.86885 0.87537 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.56 113.37 1.20 1.95 16 2 O -0.37 -13.37 10.56 -51.38 -0.54 -13.91 16 3 C 0.45 20.12 8.02 71.23 0.57 20.70 16 4 O -0.52 -26.76 16.18 21.95 0.36 -26.40 16 5 C 0.10 4.28 4.75 85.63 0.41 4.68 16 6 N -0.46 -22.59 1.69 -639.60 -1.08 -23.67 16 7 C -0.34 -17.99 9.00 84.04 0.76 -17.23 16 8 H 0.08 4.47 7.40 -2.91 -0.02 4.45 16 9 C 0.02 1.25 5.36 84.93 0.46 1.70 16 10 N -0.89 -49.29 13.96 21.66 0.30 -48.99 16 11 Si 0.92 38.76 24.88 68.60 1.71 40.47 16 12 H -0.25 -9.77 6.61 99.48 0.66 -9.11 16 13 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 14 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 15 C 0.49 22.77 7.23 87.66 0.63 23.40 16 16 O -0.60 -29.32 13.88 -3.08 -0.04 -29.36 16 17 C -0.10 -4.10 3.82 29.85 0.11 -3.98 16 18 C -0.04 -1.33 2.13 -10.80 -0.02 -1.35 16 19 H 0.05 2.01 7.65 -2.39 -0.02 2.00 16 20 C -0.14 -4.29 8.95 71.98 0.64 -3.65 16 21 C -0.15 -3.99 5.06 -10.79 -0.05 -4.05 16 22 C -0.17 -3.74 10.18 30.59 0.31 -3.43 16 23 C -0.19 -4.81 9.75 30.59 0.30 -4.51 16 24 H 0.06 1.62 8.13 -2.38 -0.02 1.60 16 25 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 26 H 0.14 2.54 8.14 -2.38 -0.02 2.52 16 27 H 0.11 4.59 2.88 -2.39 -0.01 4.58 16 28 H 0.13 5.16 7.48 -2.38 -0.02 5.15 16 29 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 30 H 0.08 3.17 7.27 -2.39 -0.02 3.16 16 31 H 0.09 3.65 8.00 -2.39 -0.02 3.63 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.04 1.65 6.24 -2.39 -0.01 1.64 16 34 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.09 2.05 8.09 -2.39 -0.02 2.04 16 37 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.08 2.24 7.99 -2.39 -0.02 2.22 16 Total: -1.00 -65.21 323.22 7.00 -58.21 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: 0.99 Total: 29.42 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 5.31 Total: 14.23 kcal Atomic # 7 Polarization: -71.88 SS G_CDS: -0.78 Total: -72.66 kcal Atomic # 8 Polarization: -69.44 SS G_CDS: -0.23 Total: -69.67 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 1.71 Total: 40.47 kcal Total: -65.21 7.00 -58.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737860662.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.516 kcal (2) G-P(sol) polarization free energy of solvation -65.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds