Wall clock time and date at job start Mon Mar 30 2020 01:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34227 * 116.99786 * 2 1 4 4 O 1.20827 * 120.00170 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00006 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47470 * 179.97438 * 5 3 2 7 7 C 1.37100 * 119.99992 * 270.00189 * 6 5 3 8 8 H 1.08001 * 119.99425 * 203.17113 * 7 6 5 9 9 C 1.38950 * 119.99874 * 23.17649 * 7 6 5 10 10 N 1.31411 * 120.00060 * 351.35711 * 9 7 6 11 11 Si 1.86801 * 119.99509 * 171.35949 * 9 7 6 12 12 H 1.48496 * 109.47332 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47129 * 119.99928 * 11 9 7 14 14 H 1.48505 * 109.46792 * 239.99653 * 11 9 7 15 15 C 1.34777 * 119.99785 * 89.99999 * 6 5 3 16 16 O 1.21292 * 120.00359 * 4.86677 * 15 6 5 17 17 C 1.50702 * 119.99819 * 184.86827 * 15 6 5 18 18 C 1.53002 * 109.47009 * 173.15799 * 17 15 6 19 19 H 1.08993 * 109.47356 * 54.99886 * 18 17 15 20 20 C 1.53004 * 109.47104 * 294.99822 * 18 17 15 21 21 C 1.52995 * 109.47040 * 175.00222 * 18 17 15 22 22 C 1.53005 * 117.49814 * 299.99822 * 21 18 17 23 23 C 1.53008 * 60.03177 * 252.50066 * 22 21 18 24 24 H 1.08998 * 109.47200 * 300.00098 * 1 2 3 25 25 H 1.08999 * 109.47332 * 60.00181 * 1 2 3 26 26 H 1.09004 * 109.46991 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47324 * 59.99982 * 5 3 2 28 28 H 1.09000 * 109.47727 * 300.00039 * 5 3 2 29 29 H 0.97000 * 119.99705 * 185.01272 * 10 9 7 30 30 H 1.08999 * 109.47327 * 53.16056 * 17 15 6 31 31 H 1.08993 * 109.47118 * 293.15685 * 17 15 6 32 32 H 1.09005 * 109.46756 * 59.99723 * 20 18 17 33 33 H 1.08999 * 109.47211 * 180.02562 * 20 18 17 34 34 H 1.08993 * 109.47066 * 300.00241 * 20 18 17 35 35 H 1.08996 * 115.56456 * 85.68864 * 21 18 17 36 36 H 1.09005 * 117.49501 * 359.97438 * 22 21 18 37 37 H 1.08993 * 117.49809 * 145.00381 * 22 21 18 38 38 H 1.08999 * 117.49754 * 107.49805 * 23 22 21 39 39 H 1.08999 * 117.49594 * 252.52134 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 4.1765 3.3364 -1.1878 8 1 4.8171 4.2050 -1.2257 9 6 3.5496 2.8844 -2.3425 10 7 2.9097 1.7366 -2.3365 11 14 3.6165 3.9083 -3.9035 12 1 4.3920 5.1488 -3.6489 13 1 4.2735 3.1257 -4.9811 14 1 2.2367 4.2645 -4.3213 15 6 4.1722 3.3267 1.1667 16 8 4.0862 2.7238 2.2156 17 6 4.4921 4.7994 1.1683 18 6 4.4909 5.3200 2.6070 19 1 5.1778 4.7254 3.2092 20 6 3.0794 5.2119 3.1873 21 6 4.9369 6.7835 2.6201 22 6 6.3311 7.1020 2.0761 23 6 6.0639 7.1707 3.5811 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.9563 0.7806 -0.8891 28 1 3.9557 0.7810 0.8908 29 1 2.5345 1.3861 -3.1595 30 1 3.7412 5.3350 0.5875 31 1 5.4753 4.9581 0.7253 32 1 2.7616 4.1693 3.1779 33 1 3.0784 5.5832 4.2121 34 1 2.3925 5.8065 2.5851 35 1 4.1494 7.5168 2.4467 36 1 6.9306 6.2689 1.7092 37 1 6.4605 8.0447 1.5445 38 1 6.4874 6.3827 4.2038 39 1 6.0172 8.1585 4.0394 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737860666.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:04 Heat of formation + Delta-G solvation = -95.546282 kcal Electronic energy + Delta-G solvation = -21736.868873 eV Core-core repulsion = 18452.877423 eV Total energy + Delta-G solvation = -3283.991450 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.48164 -38.63222 -37.35226 -35.43114 -34.53891 -32.53685 -31.52767 -28.88559 -27.13125 -25.96794 -24.50421 -22.89454 -22.12579 -20.37557 -19.45403 -18.99181 -16.94351 -16.53987 -16.19431 -15.45931 -15.31250 -15.14605 -14.56753 -14.29394 -14.02288 -13.86317 -13.03174 -12.68763 -12.50603 -12.27443 -12.19952 -11.61920 -11.42654 -11.37470 -11.27830 -11.19500 -10.88980 -10.75234 -10.64230 -10.50722 -10.36866 -10.21419 -9.86835 -9.79456 -9.64553 -9.43451 -8.98370 -8.47694 -7.91633 -6.43679 -4.05887 3.07688 3.18361 3.21660 3.53165 3.76382 4.01050 4.05124 4.12561 4.69802 4.99498 5.03550 5.16775 5.20555 5.53152 5.72277 5.77438 5.79718 5.80366 5.84433 5.97579 6.00902 6.13396 6.19950 6.29558 6.32341 6.38624 6.44446 6.52648 6.55884 6.68185 6.93228 6.93662 7.00901 7.33800 7.52687 7.68090 8.27314 8.99615 9.17251 9.40050 9.80132 10.58316 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.016622 B = 0.007076 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.102465 B = 3955.973844 C = 5168.124661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.374 6.374 3 C 0.491 3.509 4 O -0.515 6.515 5 C 0.153 3.847 6 N -0.437 5.437 7 C -0.322 4.322 8 H 0.103 0.897 9 C 0.041 3.959 10 N -0.886 5.886 11 Si 0.931 3.069 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.281 1.281 15 C 0.474 3.526 16 O -0.601 6.601 17 C -0.111 4.111 18 C -0.044 4.044 19 H 0.074 0.926 20 C -0.142 4.142 21 C -0.142 4.142 22 C -0.182 4.182 23 C -0.184 4.184 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.136 0.864 28 H 0.076 0.924 29 H 0.272 0.728 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.045 0.955 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.846 3.532 3.663 5.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.291 6.291 3 C 0.333 3.667 4 O -0.401 6.401 5 C 0.028 3.972 6 N -0.156 5.156 7 C -0.449 4.449 8 H 0.120 0.880 9 C -0.162 4.162 10 N -0.526 5.526 11 Si 0.758 3.242 12 H -0.192 1.192 13 H -0.207 1.207 14 H -0.206 1.206 15 C 0.264 3.736 16 O -0.488 6.488 17 C -0.151 4.151 18 C -0.063 4.063 19 H 0.092 0.908 20 C -0.199 4.199 21 C -0.160 4.160 22 C -0.219 4.219 23 C -0.221 4.221 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.103 0.897 27 H 0.154 0.846 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.418 3.459 4.021 5.491 hybrid contribution -0.404 0.570 -1.191 1.380 sum 1.015 4.029 2.830 5.027 Atomic orbital electron populations 1.22908 0.79032 1.01711 1.01443 1.86466 1.21381 1.35612 1.85658 1.23998 0.92380 0.80369 0.69947 1.90495 1.66723 1.36459 1.46387 1.20619 0.86854 0.85882 1.03843 1.43379 1.58331 1.08374 1.05491 1.19710 1.27175 1.12981 0.85079 0.87964 1.25293 0.94364 0.96332 1.00230 1.69606 1.36504 1.18082 1.28438 0.85795 0.78136 0.79725 0.80539 1.19216 1.20703 1.20645 1.20328 0.81012 0.89130 0.83151 1.90502 1.57866 1.68887 1.31511 1.21411 1.02888 0.93949 0.96852 1.20460 0.98053 0.91682 0.96070 0.90792 1.21813 0.95664 1.03389 0.99078 1.22446 0.91588 0.98117 1.03862 1.22927 0.99987 1.02869 0.96105 1.22993 1.03990 1.02247 0.92863 0.93277 0.92828 0.89670 0.84613 0.90632 0.91698 0.89597 0.90363 0.90728 0.93787 0.93595 0.88160 0.88679 0.89225 0.88982 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.85 16 2 O -0.37 -8.28 10.57 -39.25 -0.41 -8.69 16 3 C 0.49 12.37 5.91 36.00 0.21 12.58 16 4 O -0.51 -14.36 15.93 -18.75 -0.30 -14.66 16 5 C 0.15 3.76 5.29 -5.19 -0.03 3.73 16 6 N -0.44 -10.98 2.11 -116.09 -0.25 -11.22 16 7 C -0.32 -8.02 8.97 -14.93 -0.13 -8.16 16 8 H 0.10 2.38 6.77 -52.49 -0.36 2.03 16 9 C 0.04 1.01 5.41 -17.47 -0.09 0.92 16 10 N -0.89 -22.77 8.20 55.50 0.46 -22.31 16 11 Si 0.93 19.67 29.56 -169.99 -5.03 14.64 16 12 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 13 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 14 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 15 C 0.47 11.36 7.22 -10.98 -0.08 11.28 16 16 O -0.60 -15.39 13.80 5.55 0.08 -15.32 16 17 C -0.11 -2.20 3.62 -27.88 -0.10 -2.30 16 18 C -0.04 -0.76 2.19 -90.62 -0.20 -0.96 16 19 H 0.07 1.36 7.61 -51.93 -0.40 0.97 16 20 C -0.14 -2.54 8.92 37.16 0.33 -2.21 16 21 C -0.14 -2.02 5.15 -90.58 -0.47 -2.49 16 22 C -0.18 -2.34 9.67 -26.72 -0.26 -2.60 16 23 C -0.18 -2.27 10.18 -26.69 -0.27 -2.54 16 24 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 25 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 26 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.14 3.34 6.30 -51.93 -0.33 3.02 16 28 H 0.08 1.77 7.36 -51.93 -0.38 1.38 16 29 H 0.27 6.73 8.32 -40.82 -0.34 6.39 16 30 H 0.09 1.75 7.98 -51.93 -0.41 1.34 16 31 H 0.08 1.44 6.81 -51.93 -0.35 1.09 16 32 H 0.07 1.58 6.20 -51.93 -0.32 1.26 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.10 1.37 8.11 -51.93 -0.42 0.94 16 36 H 0.09 1.26 7.59 -51.93 -0.39 0.87 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.09 1.14 8.05 -51.93 -0.42 0.72 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 322.65 15.07 4.86 4.86 Total: -1.00 -29.86 322.65 -6.49 -36.35 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -5.88 Total: 7.25 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: -0.02 Total: 9.10 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.21 Total: -33.53 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -0.64 Total: -38.67 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.86 -6.49 -36.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737860666.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.194 kcal (2) G-P(sol) polarization free energy of solvation -29.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds