Wall clock time and date at job start Mon Mar 30 2020 01:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34227 * 116.99786 * 2 1 4 4 O 1.20827 * 120.00170 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00006 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47470 * 179.97438 * 5 3 2 7 7 C 1.37100 * 119.99992 * 270.00189 * 6 5 3 8 8 H 1.08001 * 119.99425 * 203.17113 * 7 6 5 9 9 C 1.38950 * 119.99874 * 23.17649 * 7 6 5 10 10 N 1.31411 * 120.00060 * 351.35711 * 9 7 6 11 11 Si 1.86801 * 119.99509 * 171.35949 * 9 7 6 12 12 H 1.48496 * 109.47332 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47129 * 119.99928 * 11 9 7 14 14 H 1.48505 * 109.46792 * 239.99653 * 11 9 7 15 15 C 1.34777 * 119.99785 * 89.99999 * 6 5 3 16 16 O 1.21292 * 120.00359 * 4.86677 * 15 6 5 17 17 C 1.50702 * 119.99819 * 184.86827 * 15 6 5 18 18 C 1.53002 * 109.47009 * 173.15799 * 17 15 6 19 19 H 1.08993 * 109.47356 * 54.99886 * 18 17 15 20 20 C 1.53004 * 109.47104 * 294.99822 * 18 17 15 21 21 C 1.52995 * 109.47040 * 175.00222 * 18 17 15 22 22 C 1.53005 * 117.49814 * 299.99822 * 21 18 17 23 23 C 1.53008 * 60.03177 * 252.50066 * 22 21 18 24 24 H 1.08998 * 109.47200 * 300.00098 * 1 2 3 25 25 H 1.08999 * 109.47332 * 60.00181 * 1 2 3 26 26 H 1.09004 * 109.46991 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47324 * 59.99982 * 5 3 2 28 28 H 1.09000 * 109.47727 * 300.00039 * 5 3 2 29 29 H 0.97000 * 119.99705 * 185.01272 * 10 9 7 30 30 H 1.08999 * 109.47327 * 53.16056 * 17 15 6 31 31 H 1.08993 * 109.47118 * 293.15685 * 17 15 6 32 32 H 1.09005 * 109.46756 * 59.99723 * 20 18 17 33 33 H 1.08999 * 109.47211 * 180.02562 * 20 18 17 34 34 H 1.08993 * 109.47066 * 300.00241 * 20 18 17 35 35 H 1.08996 * 115.56456 * 85.68864 * 21 18 17 36 36 H 1.09005 * 117.49501 * 359.97438 * 22 21 18 37 37 H 1.08993 * 117.49809 * 145.00381 * 22 21 18 38 38 H 1.08999 * 117.49754 * 107.49805 * 23 22 21 39 39 H 1.08999 * 117.49594 * 252.52134 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 4.1765 3.3364 -1.1878 8 1 4.8171 4.2050 -1.2257 9 6 3.5496 2.8844 -2.3425 10 7 2.9097 1.7366 -2.3365 11 14 3.6165 3.9083 -3.9035 12 1 4.3920 5.1488 -3.6489 13 1 4.2735 3.1257 -4.9811 14 1 2.2367 4.2645 -4.3213 15 6 4.1722 3.3267 1.1667 16 8 4.0862 2.7238 2.2156 17 6 4.4921 4.7994 1.1683 18 6 4.4909 5.3200 2.6070 19 1 5.1778 4.7254 3.2092 20 6 3.0794 5.2119 3.1873 21 6 4.9369 6.7835 2.6201 22 6 6.3311 7.1020 2.0761 23 6 6.0639 7.1707 3.5811 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.9563 0.7806 -0.8891 28 1 3.9557 0.7810 0.8908 29 1 2.5345 1.3861 -3.1595 30 1 3.7412 5.3350 0.5875 31 1 5.4753 4.9581 0.7253 32 1 2.7616 4.1693 3.1779 33 1 3.0784 5.5832 4.2121 34 1 2.3925 5.8065 2.5851 35 1 4.1494 7.5168 2.4467 36 1 6.9306 6.2689 1.7092 37 1 6.4605 8.0447 1.5445 38 1 6.4874 6.3827 4.2038 39 1 6.0172 8.1585 4.0394 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737860666.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:03 Heat of formation + Delta-G solvation = -111.254005 kcal Electronic energy + Delta-G solvation = -21737.550011 eV Core-core repulsion = 18452.877423 eV Total energy + Delta-G solvation = -3284.672588 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.36458 -40.37428 -38.68011 -37.28252 -36.47609 -33.95076 -33.44818 -30.67960 -28.70388 -27.67815 -26.33155 -24.24590 -23.11211 -22.12916 -21.15749 -20.53336 -18.78757 -18.43584 -18.01953 -17.27910 -16.96896 -16.53704 -16.18529 -15.98588 -15.68499 -15.35763 -14.56163 -14.36127 -14.22363 -13.95642 -13.69853 -13.28259 -13.12782 -12.98975 -12.82010 -12.63670 -12.45861 -12.35235 -12.13611 -11.99747 -11.98592 -11.62170 -11.58099 -11.46591 -11.01504 -10.93208 -10.74588 -10.33704 -9.85474 -8.32411 -6.00078 1.38849 1.46515 1.58525 1.70154 1.85969 2.23157 2.35770 2.85846 3.08546 3.15528 3.79918 4.01350 4.10900 4.23011 4.28790 4.34496 4.37540 4.39646 4.46805 4.54769 4.66473 4.72868 4.73728 4.86166 4.90447 4.96321 5.01847 5.09205 5.19870 5.24737 5.35938 5.43571 5.47459 5.56744 5.66513 5.79386 6.35682 7.08230 7.23763 7.50808 7.90818 8.69559 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.016622 B = 0.007076 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.102465 B = 3955.973844 C = 5168.124661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.376 6.376 3 C 0.493 3.507 4 O -0.549 6.549 5 C 0.151 3.849 6 N -0.449 5.449 7 C -0.337 4.337 8 H 0.116 0.884 9 C -0.004 4.004 10 N -0.908 5.908 11 Si 0.995 3.005 12 H -0.251 1.251 13 H -0.274 1.274 14 H -0.294 1.294 15 C 0.461 3.539 16 O -0.625 6.625 17 C -0.102 4.102 18 C -0.037 4.037 19 H 0.060 0.940 20 C -0.138 4.138 21 C -0.155 4.155 22 C -0.179 4.179 23 C -0.170 4.170 24 H 0.050 0.950 25 H 0.043 0.957 26 H 0.134 0.866 27 H 0.132 0.868 28 H 0.079 0.921 29 H 0.271 0.729 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.034 0.966 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.413 5.021 3.418 6.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.293 6.293 3 C 0.337 3.663 4 O -0.438 6.438 5 C 0.026 3.974 6 N -0.168 5.168 7 C -0.464 4.464 8 H 0.134 0.866 9 C -0.204 4.204 10 N -0.549 5.549 11 Si 0.819 3.181 12 H -0.175 1.175 13 H -0.199 1.199 14 H -0.220 1.220 15 C 0.253 3.747 16 O -0.513 6.513 17 C -0.142 4.142 18 C -0.056 4.056 19 H 0.079 0.921 20 C -0.195 4.195 21 C -0.174 4.174 22 C -0.216 4.216 23 C -0.207 4.207 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.152 0.848 27 H 0.150 0.850 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.128 0.872 36 H 0.106 0.894 37 H 0.126 0.874 38 H 0.108 0.892 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.002 4.929 3.785 6.529 hybrid contribution -0.642 -0.006 -1.067 1.245 sum 1.360 4.923 2.718 5.786 Atomic orbital electron populations 1.23277 0.76390 1.04809 1.01063 1.86429 1.23940 1.33932 1.85005 1.24058 0.92624 0.80622 0.69037 1.90461 1.67494 1.37685 1.48194 1.20620 0.86926 0.86272 1.03629 1.43635 1.58473 1.08609 1.06123 1.20088 1.27717 1.13467 0.85153 0.86630 1.26143 0.93968 0.97151 1.03090 1.69704 1.37037 1.19226 1.28922 0.84820 0.77398 0.78896 0.76944 1.17456 1.19917 1.22039 1.21110 0.80342 0.90776 0.82520 1.90474 1.58754 1.69831 1.32203 1.21411 1.03247 0.90808 0.98722 1.20365 0.97408 0.93855 0.93983 0.92147 1.21741 0.96127 1.00884 1.00730 1.22294 0.92735 0.95806 1.06516 1.23009 0.98294 1.03433 0.96846 1.23078 1.01736 1.03240 0.92616 0.93135 0.93770 0.84833 0.85045 0.90355 0.91897 0.90156 0.88869 0.94668 0.91493 0.93277 0.87191 0.89419 0.87376 0.89225 0.87174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.33 10.56 113.37 1.20 2.53 16 2 O -0.38 -16.70 10.57 -51.38 -0.54 -17.24 16 3 C 0.49 25.34 5.91 71.23 0.42 25.76 16 4 O -0.55 -31.36 15.93 21.96 0.35 -31.01 16 5 C 0.15 7.60 5.29 85.63 0.45 8.05 16 6 N -0.45 -22.97 2.11 -639.59 -1.35 -24.32 16 7 C -0.34 -16.80 8.97 84.04 0.75 -16.04 16 8 H 0.12 5.28 6.77 -2.91 -0.02 5.26 16 9 C 0.00 -0.18 5.41 84.93 0.46 0.28 16 10 N -0.91 -47.08 8.20 21.66 0.18 -46.91 16 11 Si 1.00 39.76 29.56 68.60 2.03 41.79 16 12 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 13 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 14 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 15 C 0.46 22.51 7.22 87.66 0.63 23.14 16 16 O -0.62 -32.89 13.80 -3.07 -0.04 -32.94 16 17 C -0.10 -4.02 3.62 29.85 0.11 -3.91 16 18 C -0.04 -1.27 2.19 -10.79 -0.02 -1.29 16 19 H 0.06 2.21 7.61 -2.39 -0.02 2.20 16 20 C -0.14 -4.90 8.92 71.98 0.64 -4.26 16 21 C -0.16 -4.08 5.15 -10.77 -0.06 -4.13 16 22 C -0.18 -4.10 9.67 30.60 0.30 -3.81 16 23 C -0.17 -3.69 10.18 30.62 0.31 -3.38 16 24 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 25 H 0.04 1.61 8.13 -2.39 -0.02 1.59 16 26 H 0.13 3.30 8.14 -2.38 -0.02 3.28 16 27 H 0.13 6.66 6.30 -2.39 -0.02 6.64 16 28 H 0.08 3.79 7.36 -2.39 -0.02 3.78 16 29 H 0.27 13.49 8.32 -92.71 -0.77 12.72 16 30 H 0.08 3.25 7.98 -2.39 -0.02 3.23 16 31 H 0.09 3.34 6.81 -2.39 -0.02 3.32 16 32 H 0.03 1.52 6.20 -2.38 -0.01 1.50 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.11 2.70 8.11 -2.39 -0.02 2.68 16 36 H 0.09 2.15 7.59 -2.38 -0.02 2.13 16 37 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.09 2.00 8.05 -2.39 -0.02 1.98 16 39 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -64.90 322.65 6.85 -58.05 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 1.04 Total: 29.66 kcal Atomic # 6 Polarization: 17.73 SS G_CDS: 5.19 Total: 22.93 kcal Atomic # 7 Polarization: -70.06 SS G_CDS: -1.17 Total: -71.23 kcal Atomic # 8 Polarization: -80.96 SS G_CDS: -0.24 Total: -81.19 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal Total: -64.90 6.85 -58.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737860666.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.208 kcal (2) G-P(sol) polarization free energy of solvation -64.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds