Wall clock time and date at job start Mon Mar 30 2020 01:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.52996 * 109.47224 * 300.00294 * 4 2 1 6 6 C 1.53002 * 109.46969 * 299.99553 * 5 4 2 7 7 C 1.52997 * 109.47092 * 60.00060 * 6 5 4 8 8 H 1.09000 * 109.47140 * 59.99774 * 7 6 5 9 9 C 1.50699 * 109.47265 * 180.02562 * 7 6 5 10 10 O 1.20828 * 120.00000 * 120.00032 * 9 7 6 11 11 O 1.34230 * 119.99729 * 299.99598 * 9 7 6 12 12 C 1.45206 * 116.99717 * 179.97438 * 11 9 7 13 13 C 1.50695 * 109.46854 * 180.02562 * 12 11 9 14 14 O 1.21288 * 120.00396 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99993 * 180.02562 * 13 12 11 16 16 C 1.37095 * 120.00293 * 180.02562 * 15 13 12 17 17 H 1.07998 * 119.99858 * 359.97438 * 16 15 13 18 18 C 1.38947 * 120.00148 * 180.02562 * 16 15 13 19 19 N 1.31412 * 120.00190 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00179 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47077 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47193 * 119.99588 * 20 18 16 23 23 H 1.48500 * 109.47130 * 239.99962 * 20 18 16 24 24 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 4 2 1 30 30 H 1.09004 * 109.47552 * 59.99646 * 5 4 2 31 31 H 1.09004 * 109.47298 * 179.97438 * 5 4 2 32 32 H 1.09002 * 109.47067 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.47312 * 299.99939 * 6 5 4 34 34 H 1.08995 * 109.47299 * 300.00676 * 12 11 9 35 35 H 1.09005 * 109.46741 * 60.01020 * 12 11 9 36 36 H 0.97005 * 119.99781 * 0.02562 * 15 13 12 37 37 H 0.97002 * 120.00211 * 180.02562 * 19 18 16 38 38 H 1.09000 * 109.47486 * 180.02562 * 24 2 1 39 39 H 1.09001 * 109.47362 * 300.00732 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.5300 -2.1637 -1.2492 6 6 2.0401 -2.8850 0.0001 7 6 1.5300 -2.1637 1.2493 8 1 0.4400 -2.1637 1.2493 9 6 2.0329 -2.8737 2.4798 10 8 2.7274 -2.2861 3.2749 11 8 1.7090 -4.1589 2.6925 12 6 2.2292 -4.7789 3.8981 13 6 1.7656 -6.2111 3.9665 14 8 1.0662 -6.6649 3.0856 15 7 2.1283 -6.9879 5.0065 16 6 1.7070 -8.2911 5.0685 17 1 1.0842 -8.6951 4.2841 18 6 2.0805 -9.0917 6.1409 19 7 2.8379 -8.5999 7.0956 20 14 1.5059 -10.8671 6.2257 21 1 0.6699 -11.1742 5.0373 22 1 2.6857 -11.7687 6.2479 23 1 0.7047 -11.0697 7.4596 24 6 2.0400 -0.7212 1.2493 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.6768 -0.2074 -2.1391 29 1 3.1300 -0.7209 -1.2494 30 1 0.4400 -2.1638 -1.2492 31 1 1.8931 -2.6775 -2.1394 32 1 1.6764 -3.9125 0.0003 33 1 3.1301 -2.8850 0.0001 34 1 3.3186 -4.7503 3.8804 35 1 1.8656 -4.2369 4.7712 36 1 2.6874 -6.6249 5.7112 37 1 3.0989 -9.1590 7.8441 38 1 3.1300 -0.7208 1.2495 39 1 1.6766 -0.2074 2.1393 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745156458.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:41 Heat of formation + Delta-G solvation = -152.596036 kcal Electronic energy + Delta-G solvation = -20586.710647 eV Core-core repulsion = 17300.245334 eV Total energy + Delta-G solvation = -3286.465313 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.66741 -38.90058 -37.98100 -36.02652 -33.99039 -32.43620 -31.38512 -31.24472 -28.37067 -26.97849 -24.87684 -23.78237 -22.45278 -20.60744 -19.55854 -18.79550 -18.05203 -17.56859 -16.54542 -16.30033 -15.67548 -15.13273 -14.76091 -14.57183 -14.15904 -14.01288 -13.87988 -13.73070 -13.01262 -12.90748 -12.66916 -12.21588 -12.12292 -11.82157 -11.77721 -11.61703 -11.31013 -11.24174 -11.14574 -10.80032 -10.43143 -10.38591 -10.35015 -10.30765 -10.19428 -10.06407 -9.60904 -8.50517 -8.07457 -6.49360 -3.91330 2.37027 2.78066 3.12173 3.24154 3.31812 3.75052 4.11666 4.39912 4.47908 4.49294 4.82986 4.91686 4.92646 5.10357 5.14185 5.15924 5.18280 5.24249 5.34051 5.47147 5.55862 5.60481 5.69146 5.72224 5.78585 5.81547 5.92740 5.98584 6.00506 6.06802 6.11513 6.16897 6.28247 6.70326 7.48588 7.89173 7.99909 8.49647 9.08002 9.40482 9.90489 10.68011 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.045483 B = 0.003302 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.471448 B = 8477.952595 C = 8797.813457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.091 4.091 3 H 0.073 0.927 4 C -0.117 4.117 5 C -0.119 4.119 6 C -0.113 4.113 7 C -0.078 4.078 8 H 0.110 0.890 9 C 0.460 3.540 10 O -0.516 6.516 11 O -0.325 6.325 12 C 0.059 3.941 13 C 0.439 3.561 14 O -0.576 6.576 15 N -0.554 5.554 16 C -0.302 4.302 17 H 0.107 0.893 18 C 0.024 3.976 19 N -0.897 5.897 20 Si 0.933 3.067 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.098 4.098 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.395 0.605 37 H 0.273 0.727 38 H 0.072 0.928 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.125 15.839 -12.396 20.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.109 4.109 3 H 0.092 0.908 4 C -0.155 4.155 5 C -0.157 4.157 6 C -0.151 4.151 7 C -0.097 4.097 8 H 0.128 0.872 9 C 0.303 3.697 10 O -0.405 6.405 11 O -0.239 6.239 12 C -0.018 4.018 13 C 0.224 3.776 14 O -0.460 6.460 15 N -0.191 5.191 16 C -0.431 4.431 17 H 0.124 0.876 18 C -0.178 4.178 19 N -0.538 5.538 20 Si 0.760 3.240 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.136 4.136 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.228 0.772 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.316 15.573 -12.558 20.049 hybrid contribution 0.273 -0.624 0.888 1.119 sum -1.043 14.949 -11.670 18.993 Atomic orbital electron populations 1.21989 0.95215 1.02364 1.01660 1.21111 0.96053 0.99198 0.94529 0.90816 1.21612 1.00747 0.95740 0.97385 1.21571 1.01327 0.95346 0.97407 1.21548 1.01285 1.00032 0.92239 1.21106 1.02929 0.94957 0.90711 0.87197 1.23852 0.77645 0.80725 0.87510 1.90636 1.36017 1.67077 1.46729 1.86558 1.68673 1.25515 1.43145 1.22733 0.99496 0.94027 0.85572 1.19337 0.86726 0.86242 0.85309 1.90556 1.41320 1.74439 1.39647 1.41719 1.45822 1.11235 1.20339 1.19778 1.29764 0.85784 1.07759 0.87566 1.25313 0.96594 1.00691 0.95204 1.69624 1.35672 1.37626 1.10894 0.85746 0.78476 0.81345 0.78461 1.19076 1.20622 1.20629 1.21475 1.01544 0.92445 0.98141 0.91862 0.92684 0.92641 0.91897 0.91849 0.91244 0.91460 0.89875 0.91419 0.89667 0.89660 0.77178 0.91692 0.90954 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 8.50 37.16 0.32 -0.85 16 2 C -0.09 -0.72 3.19 -90.63 -0.29 -1.01 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 4 C -0.12 -0.89 5.45 -26.74 -0.15 -1.04 16 5 C -0.12 -1.00 5.65 -26.73 -0.15 -1.15 16 6 C -0.11 -1.24 5.14 -26.73 -0.14 -1.37 16 7 C -0.08 -0.93 2.36 -91.77 -0.22 -1.14 16 8 H 0.11 1.20 6.43 -51.93 -0.33 0.86 16 9 C 0.46 7.41 7.25 36.01 0.26 7.68 16 10 O -0.52 -9.22 15.73 -18.75 -0.29 -9.52 16 11 O -0.32 -6.17 9.66 -45.90 -0.44 -6.61 16 12 C 0.06 1.16 5.94 36.00 0.21 1.37 16 13 C 0.44 10.73 7.86 -10.99 -0.09 10.65 16 14 O -0.58 -16.13 16.08 -14.11 -0.23 -16.36 16 15 N -0.55 -14.16 5.29 -10.97 -0.06 -14.22 16 16 C -0.30 -8.38 9.68 -14.94 -0.14 -8.53 16 17 H 0.11 3.08 7.16 -52.49 -0.38 2.71 16 18 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 19 N -0.90 -24.23 13.05 55.50 0.72 -23.51 16 20 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 C -0.10 -1.02 4.02 -26.73 -0.11 -1.12 16 25 H 0.06 0.50 4.81 -51.93 -0.25 0.25 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.56 6.43 -51.93 -0.33 0.22 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 35 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 36 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 37 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 39 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 319.82 15.07 4.82 4.82 Total: -1.00 -31.75 319.82 -6.90 -38.65 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -5.82 Total: 6.95 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -0.58 Total: 4.03 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.67 Total: -37.72 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.97 Total: -32.48 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.75 -6.90 -38.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745156458.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.943 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds