Wall clock time and date at job start Mon Mar 30 2020 01:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.52996 * 109.47224 * 300.00294 * 4 2 1 6 6 C 1.53002 * 109.46969 * 299.99553 * 5 4 2 7 7 C 1.52997 * 109.47092 * 60.00060 * 6 5 4 8 8 H 1.09000 * 109.47140 * 59.99774 * 7 6 5 9 9 C 1.50699 * 109.47265 * 180.02562 * 7 6 5 10 10 O 1.20828 * 120.00000 * 120.00032 * 9 7 6 11 11 O 1.34230 * 119.99729 * 299.99598 * 9 7 6 12 12 C 1.45206 * 116.99717 * 179.97438 * 11 9 7 13 13 C 1.50695 * 109.46854 * 180.02562 * 12 11 9 14 14 O 1.21288 * 120.00396 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99993 * 180.02562 * 13 12 11 16 16 C 1.37095 * 120.00293 * 180.02562 * 15 13 12 17 17 H 1.07998 * 119.99858 * 359.97438 * 16 15 13 18 18 C 1.38947 * 120.00148 * 180.02562 * 16 15 13 19 19 N 1.31412 * 120.00190 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00179 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47077 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47193 * 119.99588 * 20 18 16 23 23 H 1.48500 * 109.47130 * 239.99962 * 20 18 16 24 24 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 4 2 1 30 30 H 1.09004 * 109.47552 * 59.99646 * 5 4 2 31 31 H 1.09004 * 109.47298 * 179.97438 * 5 4 2 32 32 H 1.09002 * 109.47067 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.47312 * 299.99939 * 6 5 4 34 34 H 1.08995 * 109.47299 * 300.00676 * 12 11 9 35 35 H 1.09005 * 109.46741 * 60.01020 * 12 11 9 36 36 H 0.97005 * 119.99781 * 0.02562 * 15 13 12 37 37 H 0.97002 * 120.00211 * 180.02562 * 19 18 16 38 38 H 1.09000 * 109.47486 * 180.02562 * 24 2 1 39 39 H 1.09001 * 109.47362 * 300.00732 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.5300 -2.1637 -1.2492 6 6 2.0401 -2.8850 0.0001 7 6 1.5300 -2.1637 1.2493 8 1 0.4400 -2.1637 1.2493 9 6 2.0329 -2.8737 2.4798 10 8 2.7274 -2.2861 3.2749 11 8 1.7090 -4.1589 2.6925 12 6 2.2292 -4.7789 3.8981 13 6 1.7656 -6.2111 3.9665 14 8 1.0662 -6.6649 3.0856 15 7 2.1283 -6.9879 5.0065 16 6 1.7070 -8.2911 5.0685 17 1 1.0842 -8.6951 4.2841 18 6 2.0805 -9.0917 6.1409 19 7 2.8379 -8.5999 7.0956 20 14 1.5059 -10.8671 6.2257 21 1 0.6699 -11.1742 5.0373 22 1 2.6857 -11.7687 6.2479 23 1 0.7047 -11.0697 7.4596 24 6 2.0400 -0.7212 1.2493 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.6768 -0.2074 -2.1391 29 1 3.1300 -0.7209 -1.2494 30 1 0.4400 -2.1638 -1.2492 31 1 1.8931 -2.6775 -2.1394 32 1 1.6764 -3.9125 0.0003 33 1 3.1301 -2.8850 0.0001 34 1 3.3186 -4.7503 3.8804 35 1 1.8656 -4.2369 4.7712 36 1 2.6874 -6.6249 5.7112 37 1 3.0989 -9.1590 7.8441 38 1 3.1300 -0.7208 1.2495 39 1 1.6766 -0.2074 2.1393 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745156458.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:40 Heat of formation + Delta-G solvation = -171.166035 kcal Electronic energy + Delta-G solvation = -20587.515903 eV Core-core repulsion = 17300.245334 eV Total energy + Delta-G solvation = -3287.270569 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.93822 -40.27094 -39.48046 -37.49436 -36.05334 -33.46341 -33.22725 -32.06557 -30.03462 -27.64481 -26.72552 -24.95708 -23.20406 -21.81476 -21.44443 -20.09707 -19.56161 -18.85434 -17.97982 -17.71239 -17.37497 -16.60010 -16.17812 -15.84179 -15.53785 -15.36631 -14.97216 -14.73559 -14.34809 -14.08253 -13.69299 -13.58524 -13.57245 -13.36944 -12.95297 -12.72938 -12.52170 -12.48178 -12.11516 -12.05133 -12.00425 -11.86482 -11.70560 -11.60200 -11.21591 -11.04749 -10.91618 -10.52991 -10.13793 -8.54146 -6.05046 1.06891 1.33545 1.36498 1.45300 1.58865 1.84413 2.28873 3.00950 3.11185 3.51509 3.66507 3.69676 3.93587 4.11200 4.14982 4.17957 4.19024 4.25667 4.33028 4.42526 4.43878 4.64872 4.80266 4.90909 5.02041 5.09348 5.14015 5.15885 5.26780 5.28448 5.35563 5.35836 5.43246 5.46693 5.63498 5.87166 6.43516 6.62463 7.00973 7.37437 7.90831 8.63185 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.045483 B = 0.003302 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.471448 B = 8477.952595 C = 8797.813457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.085 4.085 3 H 0.086 0.914 4 C -0.115 4.115 5 C -0.115 4.115 6 C -0.112 4.112 7 C -0.073 4.073 8 H 0.122 0.878 9 C 0.458 3.542 10 O -0.534 6.534 11 O -0.343 6.343 12 C 0.069 3.931 13 C 0.437 3.563 14 O -0.617 6.617 15 N -0.558 5.558 16 C -0.339 4.339 17 H 0.085 0.915 18 C -0.009 4.009 19 N -0.916 5.916 20 Si 0.999 3.001 21 H -0.271 1.271 22 H -0.269 1.269 23 H -0.269 1.269 24 C -0.095 4.095 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.400 0.600 37 H 0.281 0.719 38 H 0.063 0.937 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.233 16.610 -13.026 21.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.104 4.104 3 H 0.105 0.895 4 C -0.152 4.152 5 C -0.152 4.152 6 C -0.150 4.150 7 C -0.092 4.092 8 H 0.140 0.860 9 C 0.303 3.697 10 O -0.423 6.423 11 O -0.258 6.258 12 C -0.008 4.008 13 C 0.223 3.777 14 O -0.503 6.503 15 N -0.195 5.195 16 C -0.468 4.468 17 H 0.103 0.897 18 C -0.210 4.210 19 N -0.556 5.556 20 Si 0.822 3.178 21 H -0.195 1.195 22 H -0.194 1.194 23 H -0.194 1.194 24 C -0.132 4.132 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.234 0.766 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.404 16.373 -13.171 21.060 hybrid contribution 0.330 -0.820 1.096 1.408 sum -1.073 15.553 -12.075 19.720 Atomic orbital electron populations 1.21997 0.94689 1.02244 1.02353 1.21107 0.96430 0.99508 0.93323 0.89532 1.21614 1.00774 0.95016 0.97831 1.21568 1.01711 0.95793 0.96150 1.21546 1.01068 0.99294 0.93068 1.21299 1.03554 0.95416 0.88930 0.86010 1.24743 0.77034 0.79570 0.88364 1.90620 1.36966 1.67084 1.47678 1.86575 1.69200 1.27179 1.42819 1.22506 1.00360 0.91047 0.86889 1.20083 0.85547 0.87915 0.84124 1.90520 1.43031 1.75833 1.40952 1.41754 1.45930 1.10989 1.20846 1.19773 1.31339 0.87264 1.08379 0.89736 1.26147 0.96060 1.04514 0.94241 1.69680 1.35588 1.39183 1.11120 0.84786 0.78319 0.76226 0.78484 1.19500 1.19392 1.19405 1.21485 1.01017 0.91350 0.99381 0.92365 0.91296 0.92730 0.90086 0.91886 0.90603 0.90546 0.91741 0.91782 0.87876 0.87804 0.76604 0.90931 0.91794 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 8.50 71.98 0.61 -1.35 16 2 C -0.09 -1.17 3.19 -10.80 -0.03 -1.20 16 3 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.11 -1.44 5.45 30.59 0.17 -1.28 16 5 C -0.11 -1.72 5.65 30.59 0.17 -1.54 16 6 C -0.11 -2.37 5.14 30.59 0.16 -2.21 16 7 C -0.07 -1.69 2.36 -11.54 -0.03 -1.71 16 8 H 0.12 2.54 6.43 -2.39 -0.02 2.52 16 9 C 0.46 14.68 7.25 71.24 0.52 15.20 16 10 O -0.53 -18.87 15.73 21.96 0.35 -18.53 16 11 O -0.34 -13.09 9.66 -45.06 -0.44 -13.53 16 12 C 0.07 2.71 5.94 71.23 0.42 3.13 16 13 C 0.44 21.79 7.86 87.66 0.69 22.48 16 14 O -0.62 -35.59 16.08 15.74 0.25 -35.34 16 15 N -0.56 -29.07 5.29 -307.00 -1.62 -30.69 16 16 C -0.34 -19.19 9.68 84.04 0.81 -18.38 16 17 H 0.08 5.08 7.16 -2.91 -0.02 5.06 16 18 C -0.01 -0.47 5.50 84.93 0.47 -0.01 16 19 N -0.92 -48.94 13.05 21.66 0.28 -48.66 16 20 Si 1.00 42.20 29.55 68.60 2.03 44.23 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 22 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 24 C -0.09 -1.84 4.02 30.60 0.12 -1.71 16 25 H 0.06 0.79 4.81 -2.39 -0.01 0.78 16 26 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 1.06 6.43 -2.39 -0.02 1.04 16 31 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.06 1.60 8.11 -2.39 -0.02 1.58 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.10 3.66 8.13 -2.39 -0.02 3.64 16 35 H 0.10 3.67 8.13 -2.38 -0.02 3.65 16 36 H 0.40 19.65 7.90 -92.70 -0.73 18.92 16 37 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 38 H 0.06 1.35 8.10 -2.39 -0.02 1.33 16 39 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 Total: -1.00 -68.14 319.82 5.25 -62.88 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: 0.32 Total: 28.23 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 4.08 Total: 11.41 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -1.34 Total: -79.35 kcal Atomic # 8 Polarization: -67.56 SS G_CDS: 0.16 Total: -67.39 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -68.14 5.25 -62.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745156458.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.281 kcal (2) G-P(sol) polarization free energy of solvation -68.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds