Wall clock time and date at job start Mon Mar 30 2020 01:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46866 * 2 1 4 4 C 1.52999 * 109.46997 * 120.00212 * 2 1 3 5 5 C 1.52997 * 109.47317 * 60.00177 * 4 2 1 6 6 C 1.53000 * 109.47060 * 59.99960 * 5 4 2 7 7 C 1.53002 * 109.47233 * 299.99657 * 6 5 4 8 8 H 1.09002 * 109.47075 * 300.00932 * 7 6 5 9 9 C 1.50693 * 109.47531 * 180.02562 * 7 6 5 10 10 O 1.20825 * 120.00633 * 240.00288 * 9 7 6 11 11 O 1.34232 * 119.99602 * 60.00321 * 9 7 6 12 12 C 1.45203 * 116.99871 * 180.02562 * 11 9 7 13 13 C 1.50701 * 109.46969 * 180.02562 * 12 11 9 14 14 O 1.21291 * 120.00149 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99602 * 179.97438 * 13 12 11 16 16 C 1.37102 * 119.99463 * 179.97438 * 15 13 12 17 17 H 1.07994 * 120.00266 * 359.97438 * 16 15 13 18 18 C 1.38958 * 119.99790 * 180.02562 * 16 15 13 19 19 N 1.31414 * 119.99503 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00037 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47016 * 59.99738 * 20 18 16 22 22 H 1.48506 * 109.47030 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47120 * 299.99540 * 20 18 16 24 24 C 1.52997 * 109.46817 * 60.00194 * 7 6 5 25 25 H 1.09000 * 109.46866 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47261 * 299.99608 * 1 2 3 27 27 H 1.09001 * 109.47377 * 60.00149 * 1 2 3 28 28 H 1.08996 * 109.46929 * 299.99280 * 4 2 1 29 29 H 1.09002 * 109.46716 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.47153 * 299.99641 * 5 4 2 31 31 H 1.09001 * 109.46832 * 179.97438 * 5 4 2 32 32 H 1.08992 * 109.47399 * 59.99823 * 6 5 4 33 33 H 1.09004 * 109.46724 * 180.02562 * 6 5 4 34 34 H 1.09005 * 109.46608 * 299.99583 * 12 11 9 35 35 H 1.08998 * 109.47280 * 59.99955 * 12 11 9 36 36 H 0.96994 * 120.00550 * 359.97438 * 15 13 12 37 37 H 0.97003 * 119.99646 * 180.02562 * 19 18 16 38 38 H 1.09002 * 109.47153 * 60.00231 * 24 7 6 39 39 H 1.09001 * 109.47289 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5301 -2.1638 1.2492 6 6 2.0401 -2.8850 -0.0001 7 6 1.5301 -2.1638 -1.2493 8 1 0.4401 -2.1637 -1.2493 9 6 2.0319 -2.8744 -2.4798 10 8 2.7265 -2.2876 -3.2754 11 8 1.7071 -4.1594 -2.6920 12 6 2.2262 -4.7802 -3.8976 13 6 1.7606 -6.2118 -3.9660 14 8 1.0606 -6.6646 -3.0850 15 7 2.1222 -6.9890 -5.0061 16 6 1.6990 -8.2916 -5.0680 17 1 1.0764 -8.6950 -4.2832 18 6 2.0721 -9.0931 -6.1400 19 7 2.8302 -8.6023 -7.0947 20 14 1.4962 -10.8681 -6.2241 21 1 0.0118 -10.9063 -6.2470 22 1 2.0265 -11.5027 -7.4576 23 1 1.9921 -11.6062 -5.0348 24 6 2.0400 -0.7213 -1.2493 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6768 -0.2074 2.1392 29 1 3.1300 -0.7209 1.2494 30 1 0.4401 -2.1638 1.2492 31 1 1.8938 -2.6777 2.1389 32 1 3.1301 -2.8849 -0.0001 33 1 1.6764 -3.9125 -0.0003 34 1 1.8627 -4.2382 -4.7707 35 1 3.3157 -4.7524 -3.8804 36 1 2.6817 -6.6268 -5.7108 37 1 3.0904 -9.1617 -7.8433 38 1 3.1300 -0.7212 -1.2493 39 1 1.6763 -0.2073 -2.1390 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745156462.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:43 Heat of formation + Delta-G solvation = -152.515149 kcal Electronic energy + Delta-G solvation = -20586.237577 eV Core-core repulsion = 17299.775771 eV Total energy + Delta-G solvation = -3286.461806 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.66639 -38.89914 -37.97787 -36.02513 -33.98762 -32.43555 -31.38450 -31.24466 -28.36839 -26.97786 -24.87400 -23.78126 -22.45202 -20.60621 -19.55583 -18.79487 -18.05095 -17.56764 -16.54379 -16.29894 -15.67318 -15.13040 -14.75991 -14.56806 -14.16465 -14.01317 -13.88287 -13.72818 -13.01216 -12.90316 -12.66678 -12.21362 -12.12215 -11.81996 -11.77666 -11.61111 -11.30929 -11.24126 -11.10464 -10.80034 -10.48504 -10.43031 -10.34727 -10.29619 -10.19397 -10.06247 -9.58598 -8.50316 -8.07295 -6.49061 -3.91132 2.37135 2.78121 3.16057 3.23145 3.28070 3.75368 4.11767 4.40006 4.47928 4.49348 4.83091 4.91751 4.92684 5.10410 5.14208 5.16056 5.18379 5.24369 5.34097 5.47189 5.55965 5.60530 5.69223 5.72383 5.78609 5.81559 5.92778 5.98624 6.00562 6.06958 6.11558 6.16926 6.28275 6.70480 7.48350 7.89086 7.99841 8.49897 9.07919 9.40550 9.90710 10.68182 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.045470 B = 0.003302 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.642182 B = 8477.911537 C = 8797.694032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.091 4.091 3 H 0.073 0.927 4 C -0.117 4.117 5 C -0.119 4.119 6 C -0.113 4.113 7 C -0.078 4.078 8 H 0.110 0.890 9 C 0.460 3.540 10 O -0.516 6.516 11 O -0.325 6.325 12 C 0.059 3.941 13 C 0.439 3.561 14 O -0.576 6.576 15 N -0.553 5.553 16 C -0.303 4.303 17 H 0.106 0.894 18 C 0.025 3.975 19 N -0.898 5.898 20 Si 0.935 3.065 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 C -0.098 4.098 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.395 0.605 37 H 0.274 0.726 38 H 0.072 0.928 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.086 15.818 12.351 20.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.109 4.109 3 H 0.092 0.908 4 C -0.155 4.155 5 C -0.156 4.156 6 C -0.151 4.151 7 C -0.097 4.097 8 H 0.128 0.872 9 C 0.303 3.697 10 O -0.405 6.405 11 O -0.239 6.239 12 C -0.018 4.018 13 C 0.224 3.776 14 O -0.460 6.460 15 N -0.190 5.190 16 C -0.432 4.432 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.538 5.538 20 Si 0.761 3.239 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.197 1.197 24 C -0.136 4.136 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.228 0.772 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.271 15.552 12.502 19.994 hybrid contribution 0.258 -0.627 -0.864 1.099 sum -1.013 14.925 11.637 18.953 Atomic orbital electron populations 1.21990 0.95215 1.02365 1.01660 1.21116 0.96053 0.99197 0.94529 0.90815 1.21614 1.00747 0.95740 0.97385 1.21571 1.01325 0.95344 0.97409 1.21548 1.01284 1.00033 0.92240 1.21103 1.02935 0.94956 0.90713 0.87203 1.23849 0.77638 0.80728 0.87516 1.90635 1.36008 1.67115 1.46702 1.86557 1.68679 1.25514 1.43142 1.22733 0.99497 0.94024 0.85566 1.19337 0.86757 0.86239 0.85315 1.90556 1.41329 1.74464 1.39652 1.41702 1.45770 1.11242 1.20330 1.19684 1.29889 0.85861 1.07807 0.87670 1.25312 0.96553 1.00681 0.95196 1.69611 1.35545 1.37810 1.10871 0.85857 0.79107 0.81280 0.77634 1.19750 1.20871 1.19747 1.21474 1.01540 0.92441 0.98142 0.91863 0.92690 0.92635 0.91896 0.91850 0.91238 0.91459 0.91418 0.89875 0.89671 0.89666 0.77170 0.91583 0.90954 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 8.50 37.16 0.32 -0.85 16 2 C -0.09 -0.72 3.20 -90.61 -0.29 -1.01 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 4 C -0.12 -0.89 5.45 -26.73 -0.15 -1.04 16 5 C -0.12 -1.00 5.65 -26.73 -0.15 -1.15 16 6 C -0.11 -1.24 5.14 -26.73 -0.14 -1.37 16 7 C -0.08 -0.93 2.35 -91.78 -0.22 -1.14 16 8 H 0.11 1.20 6.43 -51.93 -0.33 0.87 16 9 C 0.46 7.42 7.26 36.00 0.26 7.68 16 10 O -0.52 -9.23 15.73 -18.75 -0.29 -9.52 16 11 O -0.32 -6.17 9.66 -45.91 -0.44 -6.62 16 12 C 0.06 1.16 5.94 36.01 0.21 1.38 16 13 C 0.44 10.74 7.86 -10.98 -0.09 10.65 16 14 O -0.58 -16.14 16.08 -14.11 -0.23 -16.37 16 15 N -0.55 -14.16 5.29 -10.96 -0.06 -14.21 16 16 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 17 H 0.11 3.04 7.16 -52.49 -0.38 2.67 16 18 C 0.03 0.66 5.50 -17.46 -0.10 0.57 16 19 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 20 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 C -0.10 -1.02 4.02 -26.73 -0.11 -1.12 16 25 H 0.06 0.50 4.81 -51.93 -0.25 0.25 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.56 6.43 -51.93 -0.33 0.23 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 34 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 35 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 36 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 37 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 39 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 319.83 15.07 4.82 4.82 Total: -1.00 -31.72 319.83 -6.90 -38.62 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -5.82 Total: 7.03 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -0.58 Total: 4.00 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.67 Total: -37.74 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.97 Total: -32.51 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.72 -6.90 -38.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745156462.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.894 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds