Wall clock time and date at job start Mon Mar 30 2020 01:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.46862 * 2 1 4 4 C 1.53006 * 109.47223 * 119.99147 * 2 1 3 5 5 C 1.52997 * 109.47164 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46978 * 299.99874 * 5 4 2 7 7 C 1.52996 * 109.46891 * 60.00410 * 6 5 4 8 8 H 1.09001 * 109.47372 * 59.99964 * 7 6 5 9 9 C 1.50703 * 109.46946 * 179.97438 * 7 6 5 10 10 O 1.20824 * 120.00141 * 119.99972 * 9 7 6 11 11 O 1.34226 * 119.99900 * 299.99539 * 9 7 6 12 12 C 1.45203 * 116.99798 * 180.02562 * 11 9 7 13 13 C 1.50706 * 109.46928 * 180.02562 * 12 11 9 14 14 O 1.21291 * 119.99799 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99972 * 179.97438 * 13 12 11 16 16 C 1.37096 * 119.99883 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00381 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99653 * 179.97438 * 16 15 13 19 19 N 1.31417 * 120.00418 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99867 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47102 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46906 * 120.00192 * 20 18 16 23 23 H 1.48500 * 109.47343 * 240.00395 * 20 18 16 24 24 C 1.52997 * 109.47482 * 239.99435 * 2 1 3 25 25 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47747 * 300.00400 * 1 2 3 27 27 H 1.09002 * 109.47103 * 60.00812 * 1 2 3 28 28 H 1.09001 * 109.47002 * 60.00080 * 4 2 1 29 29 H 1.09000 * 109.47050 * 300.00346 * 4 2 1 30 30 H 1.09002 * 109.47045 * 180.02562 * 5 4 2 31 31 H 1.09001 * 109.47375 * 59.99966 * 5 4 2 32 32 H 1.08992 * 109.47056 * 300.00064 * 6 5 4 33 33 H 1.09004 * 109.47006 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.47246 * 300.00228 * 12 11 9 35 35 H 1.09003 * 109.47398 * 60.00414 * 12 11 9 36 36 H 0.97003 * 119.99963 * 0.02562 * 15 13 12 37 37 H 0.96995 * 120.00026 * 179.97438 * 19 18 16 38 38 H 1.09002 * 109.47153 * 59.99783 * 24 2 1 39 39 H 1.09001 * 109.46832 * 299.99974 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5699 -0.7205 1.2497 6 6 4.0804 -1.4416 0.0006 7 6 3.5705 -0.7205 -1.2487 8 1 3.9335 0.3073 -1.2487 9 6 4.0738 -1.4304 -2.4791 10 8 3.2893 -1.8900 -3.2749 11 8 5.3936 -1.5520 -2.6910 12 6 5.8063 -2.2473 -3.8971 13 6 7.3113 -2.2862 -3.9645 14 8 7.9712 -1.7784 -3.0825 15 7 7.9241 -2.8862 -5.0043 16 6 9.2932 -2.9221 -5.0652 17 1 9.8808 -2.4700 -4.2800 18 6 9.9248 -3.5411 -6.1369 19 7 9.2099 -4.0918 -7.0923 20 14 11.7903 -3.5894 -6.2204 21 1 12.3570 -2.9034 -5.0315 22 1 12.2484 -5.0019 -6.2415 23 1 12.2486 -2.9019 -7.4543 24 6 2.0400 -0.7213 -1.2491 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.6766 -1.7488 1.2495 29 1 1.6766 -0.2072 2.1393 30 1 3.9333 -1.2346 2.1395 31 1 3.9329 0.3073 1.2498 32 1 3.7175 -2.4693 0.0005 33 1 5.1705 -1.4416 0.0010 34 1 5.4172 -3.2653 -3.8808 35 1 5.4166 -1.7233 -4.7700 36 1 7.3963 -3.2926 -5.7094 37 1 9.6509 -4.5235 -7.8406 38 1 1.6767 -0.2076 -2.1392 39 1 1.6767 -1.7490 -1.2490 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745156463.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:45 Heat of formation + Delta-G solvation = -156.941976 kcal Electronic energy + Delta-G solvation = -20419.512577 eV Core-core repulsion = 17132.858809 eV Total energy + Delta-G solvation = -3286.653767 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.59716 -38.71098 -37.93682 -36.02387 -33.99203 -33.00410 -31.39813 -31.25303 -28.39017 -26.60033 -24.88322 -23.78582 -21.90271 -20.50926 -19.85654 -19.55639 -18.05670 -17.36417 -16.37184 -16.29167 -15.59442 -15.12735 -14.74806 -14.57188 -14.46035 -14.02661 -13.85253 -13.51993 -13.21059 -12.71322 -12.62382 -12.20591 -12.06671 -11.97294 -11.69341 -11.61556 -11.37745 -11.17779 -11.14396 -10.77251 -10.64148 -10.38679 -10.36084 -10.31640 -10.28368 -10.06231 -9.60975 -8.50644 -8.07547 -6.49435 -3.91399 2.36690 2.77122 3.12115 3.24094 3.31757 3.74946 4.11466 4.42125 4.45389 4.47948 4.81295 4.86035 4.91341 5.08768 5.15801 5.17703 5.22335 5.27261 5.40429 5.44092 5.48981 5.60022 5.62458 5.71638 5.76186 5.83307 5.92186 5.97447 6.01455 6.06427 6.09914 6.14164 6.26615 6.69897 7.48536 7.88943 7.99674 8.49550 9.07921 9.40395 9.90378 10.67959 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.049281 B = 0.003196 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.038782 B = 8759.244714 C = 9187.339745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.072 0.928 4 C -0.117 4.117 5 C -0.117 4.117 6 C -0.114 4.114 7 C -0.077 4.077 8 H 0.108 0.892 9 C 0.460 3.540 10 O -0.515 6.515 11 O -0.324 6.324 12 C 0.059 3.941 13 C 0.439 3.561 14 O -0.576 6.576 15 N -0.554 5.554 16 C -0.301 4.301 17 H 0.106 0.894 18 C 0.024 3.976 19 N -0.898 5.898 20 Si 0.933 3.067 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.098 4.098 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.395 0.605 37 H 0.273 0.727 38 H 0.071 0.929 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.200 5.880 12.377 20.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.091 0.909 4 C -0.155 4.155 5 C -0.155 4.155 6 C -0.151 4.151 7 C -0.096 4.096 8 H 0.126 0.874 9 C 0.303 3.697 10 O -0.404 6.404 11 O -0.239 6.239 12 C -0.018 4.018 13 C 0.224 3.776 14 O -0.460 6.460 15 N -0.191 5.191 16 C -0.430 4.430 17 H 0.124 0.876 18 C -0.178 4.178 19 N -0.538 5.538 20 Si 0.760 3.240 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.136 4.136 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.228 0.772 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.889 5.968 12.540 20.360 hybrid contribution 0.521 -0.457 -0.887 1.126 sum -14.368 5.511 11.652 19.303 Atomic orbital electron populations 1.21808 0.94974 1.01952 1.01646 1.21145 0.95641 0.99698 0.94546 0.90949 1.21654 0.95610 1.00846 0.97357 1.21532 0.95442 1.01039 0.97459 1.21554 1.02140 0.99223 0.92233 1.21073 0.96935 1.00827 0.90735 0.87395 1.23825 0.80932 0.77454 0.87482 1.90637 1.57065 1.46059 1.46664 1.86556 1.24587 1.69625 1.43112 1.22737 0.96083 0.97462 0.85549 1.19339 0.87297 0.85659 0.85310 1.90558 1.65824 1.50021 1.39566 1.41720 1.07655 1.49411 1.20339 1.19775 0.80908 1.34606 1.07756 0.87572 1.25316 1.00922 0.96367 0.95220 1.69624 1.36442 1.36882 1.10880 0.85744 0.81796 0.78019 0.78459 1.19083 1.20625 1.20620 1.21516 0.91826 1.02131 0.98104 0.92605 0.92670 0.92587 0.91820 0.91898 0.91369 0.91532 0.91412 0.89847 0.89662 0.89652 0.77173 0.91690 0.91019 0.90931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.19 37.15 0.34 -0.70 16 2 C -0.09 -0.74 2.72 -90.62 -0.25 -0.98 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 4 C -0.12 -0.89 5.20 -26.73 -0.14 -1.03 16 5 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 6 C -0.11 -1.24 5.14 -26.73 -0.14 -1.37 16 7 C -0.08 -0.91 2.63 -91.75 -0.24 -1.15 16 8 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 9 C 0.46 7.41 7.26 36.01 0.26 7.67 16 10 O -0.52 -9.20 15.73 -18.75 -0.29 -9.50 16 11 O -0.32 -6.16 9.66 -45.89 -0.44 -6.60 16 12 C 0.06 1.16 5.94 36.01 0.21 1.37 16 13 C 0.44 10.74 7.86 -10.98 -0.09 10.65 16 14 O -0.58 -16.14 16.08 -14.11 -0.23 -16.37 16 15 N -0.55 -14.16 5.29 -10.96 -0.06 -14.22 16 16 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 17 H 0.11 3.08 7.16 -52.49 -0.38 2.71 16 18 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 19 N -0.90 -24.25 13.05 55.50 0.72 -23.52 16 20 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 C -0.10 -1.01 3.78 -26.71 -0.10 -1.11 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 34 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 35 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 36 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 37 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 39 H 0.07 0.81 8.10 -51.93 -0.42 0.38 16 LS Contribution 326.87 15.07 4.93 4.93 Total: -1.00 -31.76 326.87 -7.10 -38.86 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.17 Total: 6.44 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -0.53 Total: 4.22 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.67 Total: -37.74 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -0.97 Total: -32.47 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.76 -7.10 -38.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745156463.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.084 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds