Wall clock time and date at job start Mon Mar 30 2020 01:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.46862 * 2 1 4 4 C 1.53006 * 109.47223 * 119.99147 * 2 1 3 5 5 C 1.52997 * 109.47164 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46978 * 299.99874 * 5 4 2 7 7 C 1.52996 * 109.46891 * 60.00410 * 6 5 4 8 8 H 1.09001 * 109.47372 * 59.99964 * 7 6 5 9 9 C 1.50703 * 109.46946 * 179.97438 * 7 6 5 10 10 O 1.20824 * 120.00141 * 119.99972 * 9 7 6 11 11 O 1.34226 * 119.99900 * 299.99539 * 9 7 6 12 12 C 1.45203 * 116.99798 * 180.02562 * 11 9 7 13 13 C 1.50706 * 109.46928 * 180.02562 * 12 11 9 14 14 O 1.21291 * 119.99799 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99972 * 179.97438 * 13 12 11 16 16 C 1.37096 * 119.99883 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00381 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99653 * 179.97438 * 16 15 13 19 19 N 1.31417 * 120.00418 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99867 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47102 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46906 * 120.00192 * 20 18 16 23 23 H 1.48500 * 109.47343 * 240.00395 * 20 18 16 24 24 C 1.52997 * 109.47482 * 239.99435 * 2 1 3 25 25 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47747 * 300.00400 * 1 2 3 27 27 H 1.09002 * 109.47103 * 60.00812 * 1 2 3 28 28 H 1.09001 * 109.47002 * 60.00080 * 4 2 1 29 29 H 1.09000 * 109.47050 * 300.00346 * 4 2 1 30 30 H 1.09002 * 109.47045 * 180.02562 * 5 4 2 31 31 H 1.09001 * 109.47375 * 59.99966 * 5 4 2 32 32 H 1.08992 * 109.47056 * 300.00064 * 6 5 4 33 33 H 1.09004 * 109.47006 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.47246 * 300.00228 * 12 11 9 35 35 H 1.09003 * 109.47398 * 60.00414 * 12 11 9 36 36 H 0.97003 * 119.99963 * 0.02562 * 15 13 12 37 37 H 0.96995 * 120.00026 * 179.97438 * 19 18 16 38 38 H 1.09002 * 109.47153 * 59.99783 * 24 2 1 39 39 H 1.09001 * 109.46832 * 299.99974 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5699 -0.7205 1.2497 6 6 4.0804 -1.4416 0.0006 7 6 3.5705 -0.7205 -1.2487 8 1 3.9335 0.3073 -1.2487 9 6 4.0738 -1.4304 -2.4791 10 8 3.2893 -1.8900 -3.2749 11 8 5.3936 -1.5520 -2.6910 12 6 5.8063 -2.2473 -3.8971 13 6 7.3113 -2.2862 -3.9645 14 8 7.9712 -1.7784 -3.0825 15 7 7.9241 -2.8862 -5.0043 16 6 9.2932 -2.9221 -5.0652 17 1 9.8808 -2.4700 -4.2800 18 6 9.9248 -3.5411 -6.1369 19 7 9.2099 -4.0918 -7.0923 20 14 11.7903 -3.5894 -6.2204 21 1 12.3570 -2.9034 -5.0315 22 1 12.2484 -5.0019 -6.2415 23 1 12.2486 -2.9019 -7.4543 24 6 2.0400 -0.7213 -1.2491 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.6766 -1.7488 1.2495 29 1 1.6766 -0.2072 2.1393 30 1 3.9333 -1.2346 2.1395 31 1 3.9329 0.3073 1.2498 32 1 3.7175 -2.4693 0.0005 33 1 5.1705 -1.4416 0.0010 34 1 5.4172 -3.2653 -3.8808 35 1 5.4166 -1.7233 -4.7700 36 1 7.3963 -3.2926 -5.7094 37 1 9.6509 -4.5235 -7.8406 38 1 1.6767 -0.2076 -2.1392 39 1 1.6767 -1.7490 -1.2490 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745156463.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:44 Heat of formation + Delta-G solvation = -175.301212 kcal Electronic energy + Delta-G solvation = -20420.308693 eV Core-core repulsion = 17132.858809 eV Total energy + Delta-G solvation = -3287.449884 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.89723 -40.21381 -39.27876 -37.48322 -36.05419 -33.78303 -33.42747 -32.10362 -30.05103 -27.31100 -26.71020 -24.96337 -22.66043 -21.64513 -21.42603 -20.67946 -20.09479 -18.70385 -17.94393 -17.71595 -17.22185 -16.50708 -16.11209 -15.82192 -15.66528 -15.39528 -15.04729 -14.75290 -14.30006 -14.03965 -13.76437 -13.58573 -13.40070 -13.28098 -12.95322 -12.74109 -12.49090 -12.45301 -12.19518 -12.11567 -11.93825 -11.86851 -11.67037 -11.60245 -11.36558 -11.13670 -10.97201 -10.53104 -10.13893 -8.54220 -6.05090 1.07049 1.33471 1.36236 1.45118 1.58742 1.84365 2.28772 3.00667 3.11116 3.52160 3.65969 3.69224 3.93479 4.09522 4.12877 4.14081 4.18865 4.22969 4.35067 4.45653 4.53130 4.67345 4.79281 4.85877 4.98652 5.07106 5.14860 5.16931 5.28707 5.28969 5.34952 5.35619 5.41163 5.44662 5.60575 5.87115 6.43450 6.62488 7.00910 7.37397 7.90752 8.63149 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.049281 B = 0.003196 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.038782 B = 8759.244714 C = 9187.339745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.081 0.919 4 C -0.114 4.114 5 C -0.113 4.113 6 C -0.112 4.112 7 C -0.072 4.072 8 H 0.123 0.877 9 C 0.459 3.541 10 O -0.534 6.534 11 O -0.342 6.342 12 C 0.069 3.931 13 C 0.437 3.563 14 O -0.617 6.617 15 N -0.558 5.558 16 C -0.338 4.338 17 H 0.085 0.915 18 C -0.009 4.009 19 N -0.916 5.916 20 Si 0.999 3.001 21 H -0.271 1.271 22 H -0.269 1.269 23 H -0.269 1.269 24 C -0.094 4.094 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.400 0.600 37 H 0.281 0.719 38 H 0.065 0.935 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.839 6.301 13.010 21.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 H 0.100 0.900 4 C -0.152 4.152 5 C -0.150 4.150 6 C -0.150 4.150 7 C -0.091 4.091 8 H 0.141 0.859 9 C 0.303 3.697 10 O -0.424 6.424 11 O -0.258 6.258 12 C -0.008 4.008 13 C 0.224 3.776 14 O -0.503 6.503 15 N -0.196 5.196 16 C -0.467 4.467 17 H 0.102 0.898 18 C -0.210 4.210 19 N -0.556 5.556 20 Si 0.822 3.178 21 H -0.195 1.195 22 H -0.194 1.194 23 H -0.194 1.194 24 C -0.131 4.131 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.234 0.766 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.563 6.379 13.156 21.354 hybrid contribution 0.670 -0.599 -1.096 1.417 sum -14.893 5.781 12.060 20.016 Atomic orbital electron populations 1.21798 0.94124 1.02015 1.02313 1.21141 0.96290 0.99803 0.93363 0.90047 1.21650 0.94789 1.00944 0.97802 1.21525 0.96101 1.01177 0.96194 1.21551 1.01013 0.99374 0.93078 1.21276 0.97924 1.00997 0.88915 0.85907 1.24719 0.79605 0.76997 0.88337 1.90621 1.57074 1.47027 1.47635 1.86573 1.26538 1.69867 1.42775 1.22508 0.92386 0.99034 0.86880 1.20085 0.89316 0.84123 0.84115 1.90521 1.67456 1.51497 1.40873 1.41758 1.07291 1.49650 1.20854 1.19764 0.82001 1.36543 1.08355 0.89753 1.26152 1.05434 0.95158 0.94266 1.69680 1.38266 1.36543 1.11112 0.84785 0.76062 0.78479 0.78485 1.19511 1.19401 1.19388 1.21517 0.90421 1.01860 0.99321 0.92875 0.91285 0.92673 0.92069 0.90093 0.90462 0.90734 0.91877 0.91667 0.87885 0.87784 0.76599 0.90932 0.91607 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.19 71.98 0.66 -1.08 16 2 C -0.09 -1.21 2.72 -10.79 -0.03 -1.24 16 3 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 4 C -0.11 -1.45 5.20 30.60 0.16 -1.29 16 5 C -0.11 -1.66 5.92 30.59 0.18 -1.48 16 6 C -0.11 -2.36 5.14 30.59 0.16 -2.21 16 7 C -0.07 -1.65 2.63 -11.52 -0.03 -1.68 16 8 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 9 C 0.46 14.63 7.26 71.24 0.52 15.15 16 10 O -0.53 -18.85 15.73 21.97 0.35 -18.51 16 11 O -0.34 -13.04 9.66 -45.03 -0.43 -13.48 16 12 C 0.07 2.70 5.94 71.24 0.42 3.13 16 13 C 0.44 21.78 7.86 87.66 0.69 22.47 16 14 O -0.62 -35.58 16.08 15.74 0.25 -35.33 16 15 N -0.56 -29.08 5.29 -306.98 -1.62 -30.70 16 16 C -0.34 -19.13 9.68 84.04 0.81 -18.32 16 17 H 0.08 5.07 7.16 -2.91 -0.02 5.05 16 18 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 19 N -0.92 -48.98 13.05 21.66 0.28 -48.70 16 20 Si 1.00 42.21 29.55 68.60 2.03 44.24 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 23 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 24 C -0.09 -1.82 3.78 30.61 0.12 -1.70 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.61 8.11 -2.38 -0.02 1.59 16 34 H 0.10 3.65 8.13 -2.39 -0.02 3.63 16 35 H 0.10 3.67 8.13 -2.39 -0.02 3.65 16 36 H 0.40 19.65 7.90 -92.71 -0.73 18.91 16 37 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 38 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 39 H 0.06 1.33 8.10 -2.39 -0.02 1.32 16 Total: -1.00 -68.18 326.87 5.28 -62.90 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: 0.31 Total: 27.86 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 4.13 Total: 11.72 kcal Atomic # 7 Polarization: -78.06 SS G_CDS: -1.34 Total: -79.40 kcal Atomic # 8 Polarization: -67.48 SS G_CDS: 0.16 Total: -67.31 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -68.18 5.28 -62.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745156463.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.403 kcal (2) G-P(sol) polarization free energy of solvation -68.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds