Wall clock time and date at job start Mon Mar 30 2020 01:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47716 * 2 1 4 4 C 1.50702 * 109.47534 * 239.99605 * 2 1 3 5 5 O 1.20826 * 120.00303 * 240.00372 * 4 2 1 6 6 O 1.34228 * 119.99603 * 60.00095 * 4 2 1 7 7 C 1.45206 * 117.00001 * 180.02562 * 6 4 2 8 8 C 1.50703 * 109.47147 * 180.02562 * 7 6 4 9 9 O 1.21296 * 119.99996 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99773 * 179.97438 * 8 7 6 11 11 C 1.37099 * 119.99644 * 180.02562 * 10 8 7 12 12 H 1.07998 * 120.00405 * 359.97438 * 11 10 8 13 13 C 1.38956 * 119.99908 * 180.02562 * 11 10 8 14 14 N 1.31411 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86790 * 120.00116 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47279 * 59.99899 * 15 13 11 17 17 H 1.48496 * 109.47389 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47348 * 299.99946 * 15 13 11 19 19 C 1.53001 * 109.47129 * 119.99997 * 2 1 3 20 20 C 1.54270 * 110.03061 * 297.16638 * 19 2 1 21 21 C 1.54888 * 104.19621 * 217.10331 * 20 19 2 22 22 C 1.54890 * 102.74995 * 37.94065 * 21 20 19 23 23 C 1.53877 * 110.03470 * 179.97438 * 19 2 1 24 24 H 1.09001 * 109.47443 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47242 * 300.00500 * 1 2 3 26 26 H 1.08999 * 109.46749 * 60.00417 * 1 2 3 27 27 H 1.09001 * 109.47157 * 299.99890 * 7 6 4 28 28 H 1.09004 * 109.47122 * 60.00023 * 7 6 4 29 29 H 0.96998 * 120.00166 * 0.02562 * 10 8 7 30 30 H 0.96996 * 120.00275 * 179.97438 * 14 13 11 31 31 H 1.09002 * 110.01952 * 58.60507 * 19 2 1 32 32 H 1.08993 * 110.48829 * 335.78414 * 20 19 2 33 33 H 1.09002 * 110.48312 * 98.42601 * 20 19 2 34 34 H 1.09004 * 110.75661 * 279.63167 * 21 20 19 35 35 H 1.09000 * 110.91825 * 156.33080 * 21 20 19 36 36 H 1.08995 * 110.49087 * 203.37952 * 22 21 20 37 37 H 1.08998 * 110.59590 * 80.79210 * 22 21 20 38 38 H 1.09005 * 110.03165 * 238.56808 * 23 19 2 39 39 H 1.08994 * 110.03127 * 359.94656 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7270 -1.6929 -1.1195 6 8 1.7081 -0.2519 -2.4495 7 6 2.2269 -0.9865 -3.5896 8 6 1.7630 -0.3292 -4.8640 9 8 1.0636 0.6606 -4.8161 10 7 2.1254 -0.8413 -6.0568 11 6 1.7038 -0.2430 -7.2161 12 1 1.0811 0.6383 -7.1735 13 6 2.0769 -0.7713 -8.4460 14 7 2.8342 -1.8440 -8.4979 15 14 1.5020 0.0433 -10.0255 16 1 1.9987 1.4421 -10.0703 17 1 2.0320 -0.7082 -11.1915 18 1 0.0176 0.0435 -10.0706 19 6 2.0399 -0.7213 1.2492 20 6 1.5922 0.0361 2.5165 21 6 2.7933 -0.1002 3.4848 22 6 4.0122 0.0241 2.5371 23 6 3.5786 -0.7294 1.2620 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 3.3164 -0.9862 -3.5568 28 1 1.8626 -2.0133 -3.5565 29 1 2.6844 -1.6331 -6.0951 30 1 3.0944 -2.2130 -9.3564 31 1 1.6613 -1.7432 1.2708 32 1 1.4038 1.0849 2.2875 33 1 0.7031 -0.4277 2.9438 34 1 2.7844 -1.0727 3.9769 35 1 2.7929 0.7036 4.2210 36 1 4.8892 -0.4483 2.9795 37 1 4.2169 1.0706 2.3110 38 1 3.9464 -1.7551 1.2908 39 1 3.9620 -0.2203 0.3778 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750474593.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:33 Heat of formation + Delta-G solvation = -167.809978 kcal Electronic energy + Delta-G solvation = -20501.458408 eV Core-core repulsion = 17214.333369 eV Total energy + Delta-G solvation = -3287.125039 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.89892 -40.21258 -39.17703 -37.37054 -36.05073 -34.47617 -33.43290 -30.16375 -29.64196 -28.47969 -26.75026 -25.24067 -22.14103 -21.45504 -21.43524 -20.45879 -20.08840 -18.74045 -18.00757 -17.67283 -17.20593 -16.64352 -16.27584 -16.02222 -15.79445 -15.71013 -14.79437 -14.38879 -14.22251 -14.11287 -13.74824 -13.57279 -13.46310 -13.10414 -12.94215 -12.57450 -12.50656 -12.13674 -12.07811 -11.95027 -11.86252 -11.78582 -11.62890 -11.58639 -11.43367 -11.35480 -11.26055 -10.52961 -10.14128 -8.53968 -6.05050 1.12105 1.36489 1.37105 1.45423 1.56091 1.84962 2.28882 3.01901 3.11319 3.47630 3.65568 3.68960 3.84976 4.04123 4.10778 4.15840 4.19169 4.22266 4.37579 4.59919 4.68966 4.71662 4.79202 4.85015 4.89834 4.98534 5.10025 5.14352 5.22852 5.30588 5.33109 5.35616 5.43479 5.48632 5.55364 5.86935 6.43868 6.66421 7.00656 7.37397 7.90835 8.62950 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.049304 B = 0.003217 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.772806 B = 8702.681041 C = 8997.144899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.071 4.071 3 H 0.121 0.879 4 C 0.456 3.544 5 O -0.528 6.528 6 O -0.344 6.344 7 C 0.071 3.929 8 C 0.436 3.564 9 O -0.617 6.617 10 N -0.558 5.558 11 C -0.340 4.340 12 H 0.085 0.915 13 C -0.009 4.009 14 N -0.916 5.916 15 Si 0.999 3.001 16 H -0.269 1.269 17 H -0.269 1.269 18 H -0.269 1.269 19 C -0.074 4.074 20 C -0.113 4.113 21 C -0.121 4.121 22 C -0.126 4.126 23 C -0.116 4.116 24 H 0.058 0.942 25 H 0.102 0.898 26 H 0.056 0.944 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.399 0.601 30 H 0.281 0.719 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.270 1.387 21.271 21.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.090 4.090 3 H 0.139 0.861 4 C 0.300 3.700 5 O -0.417 6.417 6 O -0.260 6.260 7 C -0.007 4.007 8 C 0.223 3.777 9 O -0.504 6.504 10 N -0.195 5.195 11 C -0.469 4.469 12 H 0.103 0.897 13 C -0.209 4.209 14 N -0.556 5.556 15 Si 0.822 3.178 16 H -0.194 1.194 17 H -0.193 1.193 18 H -0.194 1.194 19 C -0.092 4.092 20 C -0.150 4.150 21 C -0.159 4.159 22 C -0.164 4.164 23 C -0.154 4.154 24 H 0.077 0.923 25 H 0.121 0.879 26 H 0.076 0.924 27 H 0.120 0.880 28 H 0.121 0.879 29 H 0.234 0.766 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.437 1.615 21.128 21.194 hybrid contribution 0.424 -0.517 -1.330 1.489 sum -0.013 1.098 19.798 19.828 Atomic orbital electron populations 1.21814 0.90743 1.03156 1.04301 1.21409 0.99177 1.00962 0.87415 0.86133 1.24732 0.76981 0.83079 0.85169 1.90627 1.36625 1.26976 1.87435 1.86574 1.69345 1.55161 1.14886 1.22477 1.00290 0.95626 0.82284 1.20097 0.85553 0.86960 0.85092 1.90519 1.43060 1.29319 1.87483 1.41746 1.45926 1.27729 1.04100 1.19706 1.31471 1.11980 0.83756 0.89708 1.26151 0.96036 0.96518 1.02241 1.69667 1.35523 1.21900 1.28496 0.84903 0.78698 0.78197 0.76047 1.19418 1.19328 1.19420 1.21715 0.95493 0.99410 0.92600 1.22452 0.98683 1.00821 0.93047 1.22491 0.93714 1.02383 0.97264 1.22427 0.98620 1.00343 0.95002 1.22162 0.95024 1.00316 0.97874 0.92277 0.87891 0.92443 0.87968 0.87918 0.76619 0.90911 0.91087 0.90075 0.89948 0.91324 0.90048 0.91489 0.91326 0.92737 0.93972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 8.93 71.98 0.64 -2.11 16 2 C -0.07 -1.57 2.13 -11.54 -0.02 -1.60 16 3 H 0.12 2.40 8.12 -2.39 -0.02 2.38 16 4 C 0.46 14.38 6.64 71.24 0.47 14.85 16 5 O -0.53 -18.22 14.41 21.96 0.32 -17.90 16 6 O -0.34 -13.10 9.66 -45.04 -0.43 -13.53 16 7 C 0.07 2.76 5.94 71.24 0.42 3.19 16 8 C 0.44 21.79 7.86 87.66 0.69 22.48 16 9 O -0.62 -35.63 16.08 15.72 0.25 -35.37 16 10 N -0.56 -29.12 5.29 -306.98 -1.62 -30.74 16 11 C -0.34 -19.30 9.68 84.04 0.81 -18.49 16 12 H 0.08 5.07 7.16 -2.91 -0.02 5.05 16 13 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 14 N -0.92 -49.08 13.05 21.66 0.28 -48.80 16 15 Si 1.00 42.22 29.55 68.60 2.03 44.25 16 16 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 17 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 18 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 19 C -0.07 -1.41 2.12 -10.07 -0.02 -1.43 16 20 C -0.11 -1.44 5.32 31.67 0.17 -1.27 16 21 C -0.12 -1.48 6.91 31.89 0.22 -1.26 16 22 C -0.13 -1.97 6.83 31.69 0.22 -1.76 16 23 C -0.12 -2.46 5.09 31.34 0.16 -2.30 16 24 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.10 1.33 7.27 -2.39 -0.02 1.31 16 26 H 0.06 1.33 8.11 -2.39 -0.02 1.31 16 27 H 0.10 3.63 8.13 -2.39 -0.02 3.61 16 28 H 0.10 3.64 8.13 -2.38 -0.02 3.63 16 29 H 0.40 19.70 7.90 -92.71 -0.73 18.97 16 30 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 31 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 32 H 0.08 0.90 7.75 -2.39 -0.02 0.88 16 33 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.04 1.04 6.90 -2.39 -0.02 1.03 16 Total: -1.00 -68.45 325.21 5.36 -63.08 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 0.31 Total: 28.72 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 4.23 Total: 10.31 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -1.34 Total: -79.55 kcal Atomic # 8 Polarization: -66.95 SS G_CDS: 0.13 Total: -66.81 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -68.45 5.36 -63.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750474593.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.726 kcal (2) G-P(sol) polarization free energy of solvation -68.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds