Wall clock time and date at job start Mon Mar 30 2020 01:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.01579 * 2 1 4 4 C 1.54269 * 110.02939 * 238.61194 * 2 1 3 5 5 C 1.54883 * 104.19618 * 217.05565 * 4 2 1 6 6 C 1.54887 * 102.74744 * 37.94131 * 5 4 2 7 7 H 1.09000 * 110.48500 * 80.87594 * 6 5 4 8 8 C 1.53009 * 110.48526 * 203.37784 * 6 5 4 9 9 C 1.50695 * 109.47097 * 291.75989 * 8 6 5 10 10 O 1.20825 * 120.00224 * 0.02562 * 9 8 6 11 11 O 1.34232 * 119.99727 * 180.02562 * 9 8 6 12 12 C 1.45206 * 116.99878 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.47021 * 179.97438 * 12 11 9 14 14 O 1.21297 * 119.99980 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00033 * 180.02562 * 13 12 11 16 16 C 1.37088 * 120.00081 * 180.02562 * 15 13 12 17 17 H 1.08003 * 119.99914 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00230 * 179.97438 * 16 15 13 19 19 N 1.31408 * 120.00498 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99920 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47208 * 89.99447 * 20 18 16 22 22 H 1.48495 * 109.46914 * 210.00201 * 20 18 16 23 23 H 1.48500 * 109.46598 * 329.99692 * 20 18 16 24 24 C 1.54085 * 109.97076 * 121.45635 * 2 1 3 25 25 H 1.08995 * 109.47124 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47074 * 299.93099 * 1 2 3 27 27 H 1.08998 * 109.47545 * 59.93359 * 1 2 3 28 28 H 1.08998 * 110.48418 * 98.37860 * 4 2 1 29 29 H 1.08999 * 110.60162 * 335.79463 * 4 2 1 30 30 H 1.09002 * 110.75472 * 279.63227 * 5 4 2 31 31 H 1.08994 * 110.91747 * 156.33372 * 5 4 2 32 32 H 1.09003 * 109.46737 * 171.76171 * 8 6 5 33 33 H 1.09001 * 109.46838 * 51.76441 * 8 6 5 34 34 H 1.09004 * 109.47122 * 299.99817 * 12 11 9 35 35 H 1.09000 * 109.47070 * 59.99842 * 12 11 9 36 36 H 0.97004 * 119.99472 * 359.97438 * 15 13 12 37 37 H 0.97002 * 120.00283 * 180.02562 * 19 18 16 38 38 H 1.08993 * 110.16211 * 0.14303 * 24 2 1 39 39 H 1.09004 * 110.00515 * 238.64323 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0584 -0.7549 -1.2373 5 6 3.3143 -1.4994 -0.7203 6 6 2.8891 -1.9398 0.7024 7 1 2.2814 -2.8435 0.6563 8 6 4.1197 -2.1681 1.5825 9 6 4.8737 -3.3756 1.0883 10 8 4.4687 -3.9903 0.1302 11 8 5.9953 -3.7683 1.7126 12 6 6.6698 -4.9394 1.1815 13 6 7.8995 -5.2268 2.0038 14 8 8.1797 -4.5150 2.9451 15 7 8.6881 -6.2748 1.6932 16 6 9.8065 -6.5366 2.4415 17 1 10.0560 -5.9027 3.2797 18 6 10.6192 -7.6173 2.1217 19 7 11.6916 -7.8679 2.8386 20 14 10.1874 -8.7140 0.6724 21 1 10.8299 -8.1849 -0.5574 22 1 10.6751 -10.0923 0.9322 23 1 8.7137 -8.7364 0.4906 24 6 2.0563 -0.7557 1.2354 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5128 0.8907 27 1 -0.3634 0.5148 -0.8893 28 1 2.3288 -0.0527 -2.0258 29 1 1.3155 -1.4657 -1.5991 30 1 4.1712 -0.8271 -0.6765 31 1 3.5367 -2.3661 -1.3427 32 1 3.8040 -2.3334 2.6127 33 1 4.7665 -1.2920 1.5369 34 1 5.9968 -5.7960 1.2221 35 1 6.9598 -4.7539 0.1473 36 1 8.4638 -6.8442 0.9406 37 1 12.2591 -8.6222 2.6151 38 1 1.2230 -1.1245 1.8333 39 1 2.6846 -0.0975 1.8355 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759426451.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:19 Heat of formation + Delta-G solvation = -165.523347 kcal Electronic energy + Delta-G solvation = -20109.846474 eV Core-core repulsion = 16822.820590 eV Total energy + Delta-G solvation = -3287.025884 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.72893 -40.28840 -39.36392 -37.43672 -36.09710 -33.89058 -33.68974 -30.86211 -30.13368 -28.18942 -26.41720 -25.14314 -22.38755 -21.55252 -21.08537 -20.53593 -20.25315 -18.78705 -17.92554 -17.77988 -17.32880 -16.76528 -16.14431 -16.04316 -15.73545 -15.22803 -14.67794 -14.63379 -14.29511 -14.22731 -13.99857 -13.78004 -13.56254 -13.24097 -13.01201 -12.67556 -12.47484 -12.06090 -12.01706 -11.85544 -11.75926 -11.65807 -11.60501 -11.53065 -11.46712 -11.34148 -11.17262 -10.61685 -10.35697 -8.47388 -6.10636 1.16897 1.28709 1.32460 1.40219 1.47899 1.74251 2.18991 2.82466 3.06849 3.56849 3.63184 3.77478 3.83905 3.98217 4.11201 4.12885 4.21264 4.32163 4.52228 4.59758 4.62386 4.71584 4.77483 4.81185 4.90618 5.05871 5.09672 5.18539 5.23920 5.33283 5.37575 5.42972 5.50025 5.53178 5.63454 5.83816 6.45620 6.69081 6.76870 7.24150 7.76083 8.69213 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.051405 B = 0.003005 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.565930 B = 9316.065181 C = 9682.391713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.077 0.923 4 C -0.118 4.118 5 C -0.125 4.125 6 C -0.078 4.078 7 H 0.072 0.928 8 C -0.103 4.103 9 C 0.457 3.543 10 O -0.528 6.528 11 O -0.350 6.350 12 C 0.068 3.932 13 C 0.448 3.552 14 O -0.609 6.609 15 N -0.576 5.576 16 C -0.334 4.334 17 H 0.061 0.939 18 C -0.008 4.008 19 N -0.925 5.925 20 Si 0.962 3.038 21 H -0.255 1.255 22 H -0.271 1.271 23 H -0.232 1.232 24 C -0.113 4.113 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.393 0.607 37 H 0.282 0.718 38 H 0.075 0.925 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.510 11.985 -9.957 27.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.096 0.904 4 C -0.156 4.156 5 C -0.163 4.163 6 C -0.096 4.096 7 H 0.091 0.909 8 C -0.140 4.140 9 C 0.302 3.698 10 O -0.418 6.418 11 O -0.266 6.266 12 C -0.009 4.009 13 C 0.235 3.765 14 O -0.494 6.494 15 N -0.218 5.218 16 C -0.463 4.463 17 H 0.079 0.921 18 C -0.208 4.208 19 N -0.564 5.564 20 Si 0.781 3.219 21 H -0.179 1.179 22 H -0.196 1.196 23 H -0.156 1.156 24 C -0.150 4.150 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.229 0.771 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.239 12.139 -9.557 27.079 hybrid contribution 0.575 -1.072 -0.514 1.321 sum -21.664 11.067 -10.071 26.329 Atomic orbital electron populations 1.21882 0.94543 1.01730 1.01989 1.21786 0.96083 0.99466 0.94150 0.90432 1.22422 0.96680 0.98830 0.97628 1.22602 0.98224 0.99570 0.95862 1.21825 0.94057 0.99395 0.94347 0.90941 1.21686 0.96449 0.93030 1.02859 1.24641 0.78210 0.86353 0.80610 1.90621 1.67424 1.56087 1.27624 1.86587 1.38419 1.44678 1.56900 1.22545 0.92283 0.88340 0.97765 1.20230 0.86225 0.82896 0.87184 1.90576 1.74865 1.50902 1.33044 1.41828 1.23235 1.26853 1.29906 1.19004 1.01333 1.13529 1.12410 0.92129 1.26098 0.94752 0.98428 1.01521 1.69779 1.15168 1.30345 1.41148 0.85409 0.80738 0.77982 0.77738 1.17898 1.19588 1.15574 1.22322 0.99330 0.95702 0.97640 0.92947 0.92100 0.92495 0.91304 0.91836 0.91507 0.92623 0.85794 0.85983 0.86881 0.86818 0.77102 0.90782 0.90653 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.84 71.98 0.64 -0.89 16 2 C -0.10 -1.16 3.51 -10.00 -0.04 -1.20 16 3 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.12 -1.70 6.36 31.67 0.20 -1.50 16 5 C -0.13 -2.26 5.69 31.88 0.18 -2.08 16 6 C -0.08 -1.31 2.45 -9.72 -0.02 -1.34 16 7 H 0.07 1.40 7.96 -2.39 -0.02 1.38 16 8 C -0.10 -1.92 5.17 29.85 0.15 -1.76 16 9 C 0.46 12.64 7.76 71.23 0.55 13.20 16 10 O -0.53 -16.07 14.36 21.97 0.32 -15.76 16 11 O -0.35 -12.09 9.76 -45.09 -0.44 -12.53 16 12 C 0.07 2.33 5.94 71.24 0.42 2.75 16 13 C 0.45 20.97 7.86 87.66 0.69 21.66 16 14 O -0.61 -34.96 16.08 15.72 0.25 -34.71 16 15 N -0.58 -27.40 5.09 -306.98 -1.56 -28.97 16 16 C -0.33 -19.46 10.16 84.04 0.85 -18.60 16 17 H 0.06 4.19 7.39 -2.91 -0.02 4.16 16 18 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 19 N -0.92 -54.81 13.96 21.66 0.30 -54.51 16 20 Si 0.96 38.12 27.74 68.60 1.90 40.02 16 21 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 22 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 23 H -0.23 -7.81 6.52 99.48 0.65 -7.17 16 24 C -0.11 -1.39 6.04 31.39 0.19 -1.20 16 25 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.95 7.86 -2.39 -0.02 0.93 16 30 H 0.07 1.16 8.00 -2.39 -0.02 1.14 16 31 H 0.05 1.25 7.16 -2.39 -0.02 1.23 16 32 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.12 1.94 8.06 -2.39 -0.02 1.92 16 34 H 0.11 3.32 8.13 -2.38 -0.02 3.30 16 35 H 0.11 3.32 8.13 -2.39 -0.02 3.30 16 36 H 0.39 15.35 5.76 -92.71 -0.53 14.81 16 37 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 38 H 0.07 0.84 7.68 -2.39 -0.02 0.83 16 39 H 0.08 0.83 7.84 -2.39 -0.02 0.81 16 Total: -1.00 -75.29 324.12 5.51 -69.77 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.45 Total: 27.61 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 4.29 Total: 9.07 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -1.26 Total: -83.48 kcal Atomic # 8 Polarization: -63.12 SS G_CDS: 0.13 Total: -63.00 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 1.90 Total: 40.02 kcal Total: -75.29 5.51 -69.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759426451.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.750 kcal (2) G-P(sol) polarization free energy of solvation -75.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds