Wall clock time and date at job start Mon Mar 30 2020 01:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.43632 * 2 1 4 4 C 1.54892 * 110.48623 * 122.68237 * 2 1 3 5 5 C 1.54893 * 102.74908 * 156.62162 * 4 2 1 6 6 C 1.54269 * 104.19601 * 322.06180 * 5 4 2 7 7 H 1.09001 * 110.02855 * 264.32411 * 6 5 4 8 8 C 1.52994 * 110.07176 * 142.91708 * 6 5 4 9 9 C 1.50699 * 109.47033 * 67.80981 * 8 6 5 10 10 O 1.20819 * 120.00442 * 359.97438 * 9 8 6 11 11 O 1.34234 * 119.99584 * 179.97438 * 9 8 6 12 12 C 1.45200 * 117.00059 * 179.97438 * 11 9 8 13 13 C 1.50693 * 109.47430 * 180.02562 * 12 11 9 14 14 O 1.21290 * 119.99973 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00090 * 179.97438 * 13 12 11 16 16 C 1.37098 * 120.00033 * 179.97438 * 15 13 12 17 17 H 1.07997 * 119.99692 * 0.02562 * 16 15 13 18 18 C 1.38950 * 120.00008 * 180.02562 * 16 15 13 19 19 N 1.31411 * 119.99902 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99933 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47355 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47522 * 120.00099 * 20 18 16 23 23 H 1.48506 * 109.46813 * 240.00315 * 20 18 16 24 24 C 1.53873 * 106.59739 * 23.60384 * 6 5 4 25 25 H 1.09002 * 109.47153 * 182.54082 * 1 2 3 26 26 H 1.09001 * 109.46832 * 62.54273 * 1 2 3 27 27 H 1.09004 * 109.47261 * 302.54255 * 1 2 3 28 28 H 1.09006 * 110.75509 * 274.93413 * 4 2 1 29 29 H 1.08994 * 110.75559 * 38.30451 * 4 2 1 30 30 H 1.08996 * 110.48467 * 203.38049 * 5 4 2 31 31 H 1.08999 * 110.59761 * 80.79225 * 5 4 2 32 32 H 1.09008 * 109.46661 * 187.80154 * 8 6 5 33 33 H 1.08993 * 109.47421 * 307.80061 * 8 6 5 34 34 H 1.09010 * 109.46858 * 300.00401 * 12 11 9 35 35 H 1.09001 * 109.46824 * 59.99980 * 12 11 9 36 36 H 0.96996 * 120.00243 * 0.02562 * 15 13 12 37 37 H 0.96999 * 119.99783 * 180.02562 * 19 18 16 38 38 H 1.09000 * 110.03271 * 240.71599 * 24 6 5 39 39 H 1.09005 * 110.06553 * 119.30968 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7835 1.2212 5 6 3.4907 -1.1989 0.7586 6 6 3.3166 -1.5395 -0.7359 7 1 3.1693 -2.6124 -0.8596 8 6 4.5464 -1.0854 -1.5247 9 6 5.7344 -1.9241 -1.1296 10 8 5.6104 -2.7953 -0.3017 11 8 6.9305 -1.7032 -1.6975 12 6 8.0302 -2.5487 -1.2684 13 6 9.2834 -2.1568 -2.0080 14 8 9.2528 -1.2536 -2.8168 15 7 10.4383 -2.8094 -1.7699 16 6 11.5783 -2.4533 -2.4431 17 1 11.5508 -1.6496 -3.1639 18 6 12.7689 -3.1265 -2.1981 19 7 12.8021 -4.1048 -1.3213 20 14 14.3222 -2.6407 -3.1149 21 1 14.0207 -1.5191 -4.0401 22 1 15.3591 -2.2146 -2.1411 23 1 14.8216 -3.8029 -3.8929 24 6 2.0699 -0.7773 -1.2181 25 1 -0.3633 -1.0267 0.0456 26 1 -0.3633 0.4739 -0.9119 27 1 -0.3634 0.5528 0.8663 28 1 2.1251 -0.1407 2.1000 29 1 1.4580 -1.6617 1.4203 30 1 3.8315 -2.0738 1.3121 31 1 4.1915 -0.3733 0.8825 32 1 4.3574 -1.2031 -2.5918 33 1 4.7521 -0.0378 -1.3056 34 1 8.1873 -2.4245 -0.1968 35 1 7.7923 -3.5906 -1.4824 36 1 10.4629 -3.5315 -1.1227 37 1 13.6333 -4.5744 -1.1500 38 1 1.3177 -1.4803 -1.5759 39 1 2.3405 -0.0833 -2.0140 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759426453.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:21 Heat of formation + Delta-G solvation = -152.413240 kcal Electronic energy + Delta-G solvation = -20056.250126 eV Core-core repulsion = 16769.792739 eV Total energy + Delta-G solvation = -3286.457387 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.44184 -38.78463 -38.00077 -36.02554 -33.99109 -32.90401 -31.37229 -30.00156 -28.62998 -27.21564 -24.81649 -24.22513 -21.21476 -20.38440 -19.58960 -19.47073 -18.05439 -17.52317 -16.53518 -16.37946 -15.69841 -15.42068 -14.93467 -14.41208 -14.26126 -13.91376 -13.80169 -13.48591 -13.20857 -12.89491 -12.74462 -12.21212 -12.00039 -11.82276 -11.62149 -11.29711 -11.14746 -11.02998 -10.96180 -10.89234 -10.74767 -10.57570 -10.38676 -10.34867 -10.31852 -10.18850 -9.61061 -8.50756 -8.07628 -6.49489 -3.91421 2.39751 2.79971 3.12129 3.24120 3.31857 3.74952 4.11994 4.31812 4.35961 4.48856 4.74689 4.85282 4.99826 5.10703 5.15800 5.24347 5.27279 5.32114 5.40052 5.44069 5.44729 5.58602 5.64047 5.66288 5.72199 5.74281 5.84095 5.91230 5.92422 6.07326 6.13932 6.19783 6.29640 6.72148 7.48529 7.89868 8.00719 8.49574 9.07924 9.40383 9.90421 10.67900 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.063874 B = 0.002799 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.256978 B =10000.608930 C =10237.511179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.121 4.121 5 C -0.119 4.119 6 C -0.081 4.081 7 H 0.082 0.918 8 C -0.107 4.107 9 C 0.456 3.544 10 O -0.513 6.513 11 O -0.329 6.329 12 C 0.061 3.939 13 C 0.439 3.561 14 O -0.576 6.576 15 N -0.554 5.554 16 C -0.301 4.301 17 H 0.106 0.894 18 C 0.024 3.976 19 N -0.897 5.897 20 Si 0.933 3.067 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.117 4.117 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.395 0.605 37 H 0.273 0.727 38 H 0.067 0.933 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.704 4.587 3.881 21.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.092 0.908 4 C -0.158 4.158 5 C -0.156 4.156 6 C -0.099 4.099 7 H 0.100 0.900 8 C -0.145 4.145 9 C 0.299 3.701 10 O -0.402 6.402 11 O -0.243 6.243 12 C -0.017 4.017 13 C 0.223 3.777 14 O -0.460 6.460 15 N -0.191 5.191 16 C -0.430 4.430 17 H 0.124 0.876 18 C -0.178 4.178 19 N -0.538 5.538 20 Si 0.760 3.240 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.154 4.154 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.228 0.772 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.557 4.807 3.626 21.421 hybrid contribution 0.967 -0.478 0.111 1.085 sum -19.590 4.329 3.737 20.408 Atomic orbital electron populations 1.21810 0.95163 1.01728 1.01472 1.21987 0.95311 0.99363 0.95088 0.90769 1.22588 0.96385 0.99609 0.97259 1.22442 0.96571 1.01628 0.94973 1.21626 0.92360 1.00911 0.95041 0.89983 1.21582 0.89867 1.00184 1.02847 1.23823 0.84616 0.82883 0.78796 1.90631 1.85258 1.32493 1.31835 1.86561 1.17636 1.57673 1.62442 1.22714 0.85123 0.94143 0.99714 1.19356 0.84106 0.86786 0.87412 1.90558 1.85190 1.32407 1.37874 1.41722 1.06953 1.32287 1.38174 1.19775 0.85267 1.17612 1.20392 0.87579 1.25318 0.99612 0.95817 0.97102 1.69624 1.28599 1.22079 1.33518 0.85739 0.80530 0.78621 0.79099 1.19092 1.20622 1.20628 1.22297 0.96471 0.98878 0.97773 0.92661 0.92778 0.92826 0.91763 0.91486 0.90698 0.91811 0.87680 0.87629 0.89656 0.89650 0.77169 0.91692 0.91389 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.12 37.16 0.34 -0.59 16 2 C -0.10 -0.74 3.46 -88.96 -0.31 -1.05 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.12 -1.00 6.33 -24.73 -0.16 -1.16 16 5 C -0.12 -1.21 5.43 -25.07 -0.14 -1.35 16 6 C -0.08 -0.80 2.54 -89.50 -0.23 -1.03 16 7 H 0.08 0.89 7.93 -51.93 -0.41 0.48 16 8 C -0.11 -1.18 4.94 -27.89 -0.14 -1.31 16 9 C 0.46 7.07 7.74 36.01 0.28 7.35 16 10 O -0.51 -8.75 14.58 -18.74 -0.27 -9.03 16 11 O -0.33 -6.19 9.76 -45.91 -0.45 -6.64 16 12 C 0.06 1.18 5.94 36.00 0.21 1.39 16 13 C 0.44 10.74 7.86 -10.99 -0.09 10.65 16 14 O -0.58 -16.24 16.08 -14.11 -0.23 -16.46 16 15 N -0.55 -14.18 5.29 -10.97 -0.06 -14.24 16 16 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 17 H 0.11 3.09 7.16 -52.49 -0.38 2.71 16 18 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 19 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 20 Si 0.93 20.81 29.55 -169.99 -5.02 15.78 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 C -0.12 -0.91 6.03 -25.62 -0.15 -1.06 16 25 H 0.05 0.35 8.12 -51.93 -0.42 -0.07 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.54 8.04 -51.93 -0.42 0.12 16 30 H 0.07 0.88 7.66 -51.93 -0.40 0.49 16 31 H 0.06 0.67 7.76 -51.93 -0.40 0.26 16 32 H 0.10 1.00 8.14 -51.92 -0.42 0.57 16 33 H 0.11 1.03 8.01 -51.93 -0.42 0.62 16 34 H 0.09 1.52 8.14 -51.92 -0.42 1.09 16 35 H 0.09 1.52 8.13 -51.93 -0.42 1.10 16 36 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 37 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 38 H 0.07 0.50 7.84 -51.93 -0.41 0.09 16 39 H 0.07 0.49 7.67 -51.93 -0.40 0.09 16 LS Contribution 327.57 15.07 4.94 4.94 Total: -1.00 -31.88 327.57 -7.05 -38.93 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.06 Total: 6.38 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -0.62 Total: 3.86 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.67 Total: -37.75 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.95 Total: -32.13 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.88 -7.05 -38.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759426453.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.487 kcal (2) G-P(sol) polarization free energy of solvation -31.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds