Wall clock time and date at job start Mon Mar 30 2020 01:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.43632 * 2 1 4 4 C 1.54892 * 110.48623 * 122.68237 * 2 1 3 5 5 C 1.54893 * 102.74908 * 156.62162 * 4 2 1 6 6 C 1.54269 * 104.19601 * 322.06180 * 5 4 2 7 7 H 1.09001 * 110.02855 * 264.32411 * 6 5 4 8 8 C 1.52994 * 110.07176 * 142.91708 * 6 5 4 9 9 C 1.50699 * 109.47033 * 67.80981 * 8 6 5 10 10 O 1.20819 * 120.00442 * 359.97438 * 9 8 6 11 11 O 1.34234 * 119.99584 * 179.97438 * 9 8 6 12 12 C 1.45200 * 117.00059 * 179.97438 * 11 9 8 13 13 C 1.50693 * 109.47430 * 180.02562 * 12 11 9 14 14 O 1.21290 * 119.99973 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00090 * 179.97438 * 13 12 11 16 16 C 1.37098 * 120.00033 * 179.97438 * 15 13 12 17 17 H 1.07997 * 119.99692 * 0.02562 * 16 15 13 18 18 C 1.38950 * 120.00008 * 180.02562 * 16 15 13 19 19 N 1.31411 * 119.99902 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99933 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47355 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47522 * 120.00099 * 20 18 16 23 23 H 1.48506 * 109.46813 * 240.00315 * 20 18 16 24 24 C 1.53873 * 106.59739 * 23.60384 * 6 5 4 25 25 H 1.09002 * 109.47153 * 182.54082 * 1 2 3 26 26 H 1.09001 * 109.46832 * 62.54273 * 1 2 3 27 27 H 1.09004 * 109.47261 * 302.54255 * 1 2 3 28 28 H 1.09006 * 110.75509 * 274.93413 * 4 2 1 29 29 H 1.08994 * 110.75559 * 38.30451 * 4 2 1 30 30 H 1.08996 * 110.48467 * 203.38049 * 5 4 2 31 31 H 1.08999 * 110.59761 * 80.79225 * 5 4 2 32 32 H 1.09008 * 109.46661 * 187.80154 * 8 6 5 33 33 H 1.08993 * 109.47421 * 307.80061 * 8 6 5 34 34 H 1.09010 * 109.46858 * 300.00401 * 12 11 9 35 35 H 1.09001 * 109.46824 * 59.99980 * 12 11 9 36 36 H 0.96996 * 120.00243 * 0.02562 * 15 13 12 37 37 H 0.96999 * 119.99783 * 180.02562 * 19 18 16 38 38 H 1.09000 * 110.03271 * 240.71599 * 24 6 5 39 39 H 1.09005 * 110.06553 * 119.30968 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7835 1.2212 5 6 3.4907 -1.1989 0.7586 6 6 3.3166 -1.5395 -0.7359 7 1 3.1693 -2.6124 -0.8596 8 6 4.5464 -1.0854 -1.5247 9 6 5.7344 -1.9241 -1.1296 10 8 5.6104 -2.7953 -0.3017 11 8 6.9305 -1.7032 -1.6975 12 6 8.0302 -2.5487 -1.2684 13 6 9.2834 -2.1568 -2.0080 14 8 9.2528 -1.2536 -2.8168 15 7 10.4383 -2.8094 -1.7699 16 6 11.5783 -2.4533 -2.4431 17 1 11.5508 -1.6496 -3.1639 18 6 12.7689 -3.1265 -2.1981 19 7 12.8021 -4.1048 -1.3213 20 14 14.3222 -2.6407 -3.1149 21 1 14.0207 -1.5191 -4.0401 22 1 15.3591 -2.2146 -2.1411 23 1 14.8216 -3.8029 -3.8929 24 6 2.0699 -0.7773 -1.2181 25 1 -0.3633 -1.0267 0.0456 26 1 -0.3633 0.4739 -0.9119 27 1 -0.3634 0.5528 0.8663 28 1 2.1251 -0.1407 2.1000 29 1 1.4580 -1.6617 1.4203 30 1 3.8315 -2.0738 1.3121 31 1 4.1915 -0.3733 0.8825 32 1 4.3574 -1.2031 -2.5918 33 1 4.7521 -0.0378 -1.3056 34 1 8.1873 -2.4245 -0.1968 35 1 7.7923 -3.5906 -1.4824 36 1 10.4629 -3.5315 -1.1227 37 1 13.6333 -4.5744 -1.1500 38 1 1.3177 -1.4803 -1.5759 39 1 2.3405 -0.0833 -2.0140 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759426453.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:21 Heat of formation + Delta-G solvation = -170.854908 kcal Electronic energy + Delta-G solvation = -20057.049816 eV Core-core repulsion = 16769.792739 eV Total energy + Delta-G solvation = -3287.257078 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.72868 -40.17130 -39.35016 -37.42732 -36.04916 -33.69959 -33.42305 -30.84137 -30.03238 -28.17589 -26.55146 -25.15288 -22.37614 -21.44097 -21.14401 -20.25378 -20.07683 -18.82415 -17.93641 -17.78259 -17.30445 -16.58690 -16.20777 -15.99007 -15.71336 -15.50302 -14.59604 -14.54743 -14.37686 -13.97351 -13.74093 -13.59014 -13.51176 -13.27584 -12.94959 -12.61052 -12.48281 -12.11489 -12.07238 -11.86537 -11.73171 -11.66870 -11.60049 -11.57990 -11.52370 -11.30714 -11.18369 -10.52768 -10.13654 -8.54024 -6.04844 1.16355 1.33748 1.39150 1.47730 1.59799 1.84977 2.29385 3.04959 3.11397 3.57046 3.62973 3.75331 3.85908 4.09793 4.13657 4.19431 4.21361 4.29190 4.53090 4.58474 4.64794 4.73837 4.75622 4.79713 4.95692 5.01879 5.12687 5.18223 5.22932 5.32433 5.35664 5.39500 5.46081 5.54327 5.62065 5.87655 6.44395 6.69750 7.01289 7.37935 7.91362 8.63322 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.063874 B = 0.002799 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.256978 B =10000.608930 C =10237.511179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.077 0.923 4 C -0.118 4.118 5 C -0.122 4.122 6 C -0.078 4.078 7 H 0.069 0.931 8 C -0.102 4.102 9 C 0.454 3.546 10 O -0.531 6.531 11 O -0.348 6.348 12 C 0.071 3.929 13 C 0.436 3.564 14 O -0.618 6.618 15 N -0.559 5.559 16 C -0.338 4.338 17 H 0.084 0.916 18 C -0.010 4.010 19 N -0.916 5.916 20 Si 1.000 3.000 21 H -0.271 1.271 22 H -0.269 1.269 23 H -0.269 1.269 24 C -0.112 4.112 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.400 0.600 37 H 0.281 0.719 38 H 0.075 0.925 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.494 4.949 3.755 22.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.096 0.904 4 C -0.155 4.155 5 C -0.160 4.160 6 C -0.097 4.097 7 H 0.088 0.912 8 C -0.139 4.139 9 C 0.299 3.701 10 O -0.420 6.420 11 O -0.264 6.264 12 C -0.006 4.006 13 C 0.223 3.777 14 O -0.505 6.505 15 N -0.196 5.196 16 C -0.467 4.467 17 H 0.102 0.898 18 C -0.211 4.211 19 N -0.556 5.556 20 Si 0.822 3.178 21 H -0.195 1.195 22 H -0.194 1.194 23 H -0.194 1.194 24 C -0.149 4.149 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.234 0.766 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.367 5.144 3.530 22.259 hybrid contribution 1.170 -0.618 0.198 1.338 sum -20.197 4.526 3.728 21.031 Atomic orbital electron populations 1.21791 0.94220 1.01919 1.02051 1.21990 0.96073 0.99247 0.94261 0.90428 1.22572 0.95066 0.99902 0.97970 1.22433 0.97745 1.00527 0.95270 1.21624 0.92853 1.00545 0.94659 0.91200 1.21794 0.87893 1.00065 1.04146 1.24740 0.84303 0.82994 0.78082 1.90625 1.85244 1.33516 1.32645 1.86576 1.18509 1.57941 1.63374 1.22462 0.83503 0.94990 0.99628 1.20139 0.85190 0.85642 0.86752 1.90520 1.86101 1.34126 1.39746 1.41767 1.07105 1.32552 1.38187 1.19761 0.86909 1.18404 1.21583 0.89773 1.26157 1.02071 0.95325 0.97522 1.69680 1.29815 1.22262 1.33837 0.84778 0.76612 0.78393 0.77985 1.19528 1.19398 1.19408 1.22280 0.95388 0.99040 0.98201 0.92664 0.92075 0.92433 0.91271 0.91406 0.92916 0.92214 0.85675 0.86002 0.87881 0.87829 0.76592 0.90942 0.90657 0.90130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.12 71.98 0.66 -0.85 16 2 C -0.10 -1.24 3.46 -9.72 -0.03 -1.27 16 3 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 4 C -0.12 -1.79 6.33 31.89 0.20 -1.59 16 5 C -0.12 -2.42 5.43 31.67 0.17 -2.25 16 6 C -0.08 -1.43 2.54 -10.07 -0.03 -1.46 16 7 H 0.07 1.46 7.93 -2.39 -0.02 1.44 16 8 C -0.10 -2.06 4.94 29.85 0.15 -1.91 16 9 C 0.45 13.72 7.74 71.24 0.55 14.27 16 10 O -0.53 -17.85 14.58 21.98 0.32 -17.53 16 11 O -0.35 -12.97 9.76 -45.10 -0.44 -13.41 16 12 C 0.07 2.76 5.94 71.23 0.42 3.18 16 13 C 0.44 21.67 7.86 87.65 0.69 22.36 16 14 O -0.62 -35.65 16.08 15.74 0.25 -35.40 16 15 N -0.56 -29.07 5.29 -306.99 -1.62 -30.70 16 16 C -0.34 -19.12 9.68 84.04 0.81 -18.31 16 17 H 0.08 5.06 7.16 -2.91 -0.02 5.04 16 18 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 19 N -0.92 -48.96 13.05 21.66 0.28 -48.67 16 20 Si 1.00 42.22 29.55 68.60 2.03 44.24 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 24 C -0.11 -1.48 6.03 31.32 0.19 -1.29 16 25 H 0.05 0.59 8.12 -2.39 -0.02 0.57 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.07 1.02 8.04 -2.39 -0.02 1.00 16 30 H 0.05 1.26 7.66 -2.39 -0.02 1.24 16 31 H 0.06 1.21 7.76 -2.39 -0.02 1.19 16 32 H 0.13 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.12 2.12 8.01 -2.39 -0.02 2.10 16 34 H 0.10 3.60 8.14 -2.38 -0.02 3.58 16 35 H 0.10 3.61 8.13 -2.39 -0.02 3.59 16 36 H 0.40 19.61 7.90 -92.71 -0.73 18.88 16 37 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 38 H 0.07 0.91 7.84 -2.39 -0.02 0.89 16 39 H 0.08 0.90 7.67 -2.38 -0.02 0.88 16 Total: -1.00 -68.51 327.57 5.38 -63.13 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: 0.31 Total: 27.52 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 4.25 Total: 10.82 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -1.34 Total: -79.37 kcal Atomic # 8 Polarization: -66.47 SS G_CDS: 0.13 Total: -66.34 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Total: -68.51 5.38 -63.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759426453.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.729 kcal (2) G-P(sol) polarization free energy of solvation -68.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds