Wall clock time and date at job start Mon Mar 30 2020 01:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.05456 * 2 1 4 4 C 1.54264 * 110.03139 * 238.58336 * 2 1 3 5 5 C 1.54897 * 104.19493 * 217.10637 * 4 2 1 6 6 C 1.54888 * 102.74764 * 37.94423 * 5 4 2 7 7 C 1.53876 * 110.03252 * 121.41865 * 2 1 3 8 8 H 1.08998 * 110.03128 * 238.56869 * 7 2 1 9 9 C 1.53004 * 110.07333 * 359.97377 * 7 2 1 10 10 C 1.50693 * 109.47244 * 183.64682 * 9 7 2 11 11 O 1.20827 * 120.00056 * 0.02562 * 10 9 7 12 12 O 1.34228 * 119.99874 * 180.02562 * 10 9 7 13 13 C 1.45204 * 117.00032 * 180.02562 * 12 10 9 14 14 C 1.50692 * 109.47497 * 180.02562 * 13 12 10 15 15 O 1.21294 * 119.99826 * 359.97438 * 14 13 12 16 16 N 1.34771 * 120.00408 * 180.02562 * 14 13 12 17 17 C 1.37107 * 120.00191 * 179.97438 * 16 14 13 18 18 H 1.07999 * 119.99947 * 359.97438 * 17 16 14 19 19 C 1.38948 * 119.99733 * 179.97438 * 17 16 14 20 20 N 1.31414 * 120.00417 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99955 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46726 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47167 * 119.99779 * 21 19 17 24 24 H 1.48494 * 109.47105 * 240.00188 * 21 19 17 25 25 H 1.09003 * 109.47056 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47277 * 299.96412 * 1 2 3 27 27 H 1.09005 * 109.47204 * 59.96223 * 1 2 3 28 28 H 1.08998 * 110.49036 * 98.43093 * 4 2 1 29 29 H 1.09000 * 110.49063 * 335.78134 * 4 2 1 30 30 H 1.08999 * 110.75405 * 156.25631 * 5 4 2 31 31 H 1.08998 * 110.75198 * 279.44101 * 5 4 2 32 32 H 1.09001 * 110.48777 * 80.73468 * 6 5 4 33 33 H 1.09004 * 110.48562 * 203.38090 * 6 5 4 34 34 H 1.09003 * 109.47264 * 303.65350 * 9 7 2 35 35 H 1.09010 * 109.46792 * 63.64544 * 9 7 2 36 36 H 1.09004 * 109.46994 * 299.99925 * 13 12 10 37 37 H 1.09001 * 109.47013 * 59.99802 * 13 12 10 38 38 H 0.97004 * 119.99931 * 359.97438 * 16 14 13 39 39 H 0.97000 * 120.00186 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 -1.2368 5 6 3.3137 -1.5008 -0.7191 6 6 2.8874 -1.9407 0.7035 7 6 2.0571 -0.7536 1.2337 8 1 2.6867 -0.0954 1.8324 9 6 0.8868 -1.2669 2.0752 10 6 1.4160 -1.9237 3.3239 11 8 2.6070 -1.9757 3.5209 12 8 0.5644 -2.4512 4.2173 13 6 1.1446 -3.0674 5.3971 14 6 0.0444 -3.6005 6.2781 15 8 -1.1149 -3.4732 5.9447 16 7 0.3483 -4.2178 7.4369 17 6 -0.6527 -4.7024 8.2387 18 1 -1.6849 -4.5890 7.9418 19 6 -0.3392 -5.3393 9.4331 20 7 0.9167 -5.4768 9.7946 21 14 -1.7031 -6.0002 10.5252 22 1 -3.0195 -5.7196 9.8976 23 1 -1.5365 -7.4662 10.6929 24 1 -1.6377 -5.3394 11.8535 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5133 0.8903 27 1 -0.3634 0.5144 -0.8897 28 1 2.3297 -0.0537 -2.0255 29 1 1.3143 -1.4660 -1.5966 30 1 3.5325 -2.3679 -1.3422 31 1 4.1717 -0.8299 -0.6782 32 1 2.2770 -2.8426 0.6571 33 1 3.7637 -2.1038 1.3310 34 1 0.2424 -0.4315 2.3492 35 1 0.3146 -1.9928 1.4973 36 1 1.7971 -3.8868 5.0954 37 1 1.7236 -2.3255 5.9470 38 1 1.2754 -4.3194 7.7037 39 1 1.1355 -5.9211 10.6286 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769167865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:25 Heat of formation + Delta-G solvation = -146.678363 kcal Electronic energy + Delta-G solvation = -20332.058302 eV Core-core repulsion = 17045.849598 eV Total energy + Delta-G solvation = -3286.208704 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.51857 -38.93710 -37.99629 -35.98813 -33.98763 -32.21048 -31.37358 -31.10036 -28.50904 -26.27460 -25.14102 -24.45845 -21.26547 -20.80749 -19.55806 -18.66829 -18.04442 -17.67601 -16.63217 -16.29507 -15.89565 -15.21000 -14.97650 -14.48693 -14.38759 -13.93767 -13.84976 -13.53012 -13.18244 -12.64945 -12.59735 -12.33338 -12.00122 -11.87088 -11.61901 -11.16136 -11.13326 -10.99120 -10.92825 -10.86645 -10.73374 -10.47332 -10.38555 -10.33671 -10.31680 -10.18678 -9.60837 -8.50427 -8.07405 -6.49312 -3.91302 2.40764 2.81023 3.12242 3.24215 3.31928 3.75222 4.12181 4.31882 4.36585 4.46988 4.75078 4.96875 5.08015 5.11384 5.15350 5.16291 5.22495 5.31335 5.38426 5.40357 5.58608 5.59882 5.60999 5.72408 5.73175 5.77154 5.80986 5.94513 6.01106 6.08137 6.16534 6.19853 6.28254 6.73331 7.48640 7.90448 8.01506 8.49764 9.08095 9.40585 9.90641 10.68065 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.049683 B = 0.003068 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.441615 B = 9122.954494 C = 9483.712436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.092 4.092 3 H 0.073 0.927 4 C -0.120 4.120 5 C -0.127 4.127 6 C -0.118 4.118 7 C -0.077 4.077 8 H 0.081 0.919 9 C -0.109 4.109 10 C 0.454 3.546 11 O -0.514 6.514 12 O -0.328 6.328 13 C 0.061 3.939 14 C 0.439 3.561 15 O -0.576 6.576 16 N -0.554 5.554 17 C -0.302 4.302 18 H 0.106 0.894 19 C 0.024 3.976 20 N -0.898 5.898 21 Si 0.933 3.067 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.395 0.605 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.292 8.981 -18.257 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.110 4.110 3 H 0.092 0.908 4 C -0.158 4.158 5 C -0.164 4.164 6 C -0.155 4.155 7 C -0.095 4.095 8 H 0.100 0.900 9 C -0.146 4.146 10 C 0.297 3.703 11 O -0.403 6.403 12 O -0.243 6.243 13 C -0.017 4.017 14 C 0.223 3.777 15 O -0.460 6.460 16 N -0.191 5.191 17 C -0.431 4.431 18 H 0.124 0.876 19 C -0.178 4.178 20 N -0.538 5.538 21 Si 0.760 3.240 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.228 0.772 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.926 8.943 -18.211 20.664 hybrid contribution 0.179 -0.472 0.947 1.073 sum 4.105 8.470 -17.264 19.663 Atomic orbital electron populations 1.22058 0.94945 1.02282 1.01815 1.21781 0.95863 0.99272 0.94118 0.90806 1.22463 0.97496 0.98918 0.96919 1.22503 0.97597 0.99811 0.96506 1.22444 1.00235 0.97144 0.95682 1.21661 0.95072 0.97506 0.95292 0.90027 1.21722 0.99987 1.01721 0.91212 1.23909 0.85343 0.75992 0.85028 1.90630 1.17345 1.55535 1.76783 1.86560 1.39899 1.67154 1.30689 1.22710 0.96159 0.98110 0.84724 1.19356 0.89187 0.85269 0.83840 1.90559 1.20196 1.61603 1.73672 1.41723 1.10224 1.49993 1.17190 1.19779 0.89961 1.33327 1.00000 0.87577 1.25314 0.97439 0.97324 0.97734 1.69623 1.16943 1.43071 1.24191 0.85744 0.80625 0.78327 0.79327 1.19081 1.20621 1.20627 0.91985 0.92098 0.92794 0.91891 0.91446 0.91727 0.91601 0.91846 0.90655 0.87398 0.87476 0.89677 0.89668 0.77173 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 7.87 37.16 0.29 -0.83 16 2 C -0.09 -0.73 3.50 -89.50 -0.31 -1.04 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.12 -0.90 6.36 -25.07 -0.16 -1.06 16 5 C -0.13 -1.05 6.91 -24.73 -0.17 -1.22 16 6 C -0.12 -1.22 5.36 -25.07 -0.13 -1.35 16 7 C -0.08 -0.77 2.55 -89.50 -0.23 -0.99 16 8 H 0.08 0.89 7.97 -51.93 -0.41 0.48 16 9 C -0.11 -1.21 3.98 -27.88 -0.11 -1.32 16 10 C 0.45 7.08 7.73 36.00 0.28 7.36 16 11 O -0.51 -8.79 14.50 -18.75 -0.27 -9.06 16 12 O -0.33 -6.20 9.76 -45.90 -0.45 -6.65 16 13 C 0.06 1.18 5.94 36.00 0.21 1.39 16 14 C 0.44 10.74 7.86 -10.99 -0.09 10.65 16 15 O -0.58 -16.23 16.08 -14.11 -0.23 -16.45 16 16 N -0.55 -14.17 5.29 -10.97 -0.06 -14.23 16 17 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 18 H 0.11 3.09 7.16 -52.49 -0.38 2.71 16 19 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 20 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 21 Si 0.93 20.80 29.55 -169.99 -5.02 15.77 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H 0.06 0.46 6.75 -51.93 -0.35 0.11 16 26 H 0.06 0.44 6.74 -51.93 -0.35 0.09 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.49 7.85 -51.93 -0.41 0.09 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.68 7.78 -51.93 -0.40 0.27 16 33 H 0.07 0.90 7.60 -51.93 -0.39 0.50 16 34 H 0.11 1.05 6.55 -51.93 -0.34 0.71 16 35 H 0.11 1.07 6.83 -51.92 -0.35 0.72 16 36 H 0.09 1.52 8.13 -51.93 -0.42 1.09 16 37 H 0.09 1.52 8.13 -51.93 -0.42 1.10 16 38 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 39 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 LS Contribution 321.22 15.07 4.84 4.84 Total: -1.00 -31.84 321.22 -6.93 -38.77 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.81 Total: 6.93 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -0.66 Total: 3.60 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.67 Total: -37.75 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -0.95 Total: -32.16 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.84 -6.93 -38.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769167865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.906 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds