Wall clock time and date at job start Mon Mar 30 2020 01:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.05456 * 2 1 4 4 C 1.54264 * 110.03139 * 238.58336 * 2 1 3 5 5 C 1.54897 * 104.19493 * 217.10637 * 4 2 1 6 6 C 1.54888 * 102.74764 * 37.94423 * 5 4 2 7 7 C 1.53876 * 110.03252 * 121.41865 * 2 1 3 8 8 H 1.08998 * 110.03128 * 238.56869 * 7 2 1 9 9 C 1.53004 * 110.07333 * 359.97377 * 7 2 1 10 10 C 1.50693 * 109.47244 * 183.64682 * 9 7 2 11 11 O 1.20827 * 120.00056 * 0.02562 * 10 9 7 12 12 O 1.34228 * 119.99874 * 180.02562 * 10 9 7 13 13 C 1.45204 * 117.00032 * 180.02562 * 12 10 9 14 14 C 1.50692 * 109.47497 * 180.02562 * 13 12 10 15 15 O 1.21294 * 119.99826 * 359.97438 * 14 13 12 16 16 N 1.34771 * 120.00408 * 180.02562 * 14 13 12 17 17 C 1.37107 * 120.00191 * 179.97438 * 16 14 13 18 18 H 1.07999 * 119.99947 * 359.97438 * 17 16 14 19 19 C 1.38948 * 119.99733 * 179.97438 * 17 16 14 20 20 N 1.31414 * 120.00417 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99955 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46726 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47167 * 119.99779 * 21 19 17 24 24 H 1.48494 * 109.47105 * 240.00188 * 21 19 17 25 25 H 1.09003 * 109.47056 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47277 * 299.96412 * 1 2 3 27 27 H 1.09005 * 109.47204 * 59.96223 * 1 2 3 28 28 H 1.08998 * 110.49036 * 98.43093 * 4 2 1 29 29 H 1.09000 * 110.49063 * 335.78134 * 4 2 1 30 30 H 1.08999 * 110.75405 * 156.25631 * 5 4 2 31 31 H 1.08998 * 110.75198 * 279.44101 * 5 4 2 32 32 H 1.09001 * 110.48777 * 80.73468 * 6 5 4 33 33 H 1.09004 * 110.48562 * 203.38090 * 6 5 4 34 34 H 1.09003 * 109.47264 * 303.65350 * 9 7 2 35 35 H 1.09010 * 109.46792 * 63.64544 * 9 7 2 36 36 H 1.09004 * 109.46994 * 299.99925 * 13 12 10 37 37 H 1.09001 * 109.47013 * 59.99802 * 13 12 10 38 38 H 0.97004 * 119.99931 * 359.97438 * 16 14 13 39 39 H 0.97000 * 120.00186 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 -1.2368 5 6 3.3137 -1.5008 -0.7191 6 6 2.8874 -1.9407 0.7035 7 6 2.0571 -0.7536 1.2337 8 1 2.6867 -0.0954 1.8324 9 6 0.8868 -1.2669 2.0752 10 6 1.4160 -1.9237 3.3239 11 8 2.6070 -1.9757 3.5209 12 8 0.5644 -2.4512 4.2173 13 6 1.1446 -3.0674 5.3971 14 6 0.0444 -3.6005 6.2781 15 8 -1.1149 -3.4732 5.9447 16 7 0.3483 -4.2178 7.4369 17 6 -0.6527 -4.7024 8.2387 18 1 -1.6849 -4.5890 7.9418 19 6 -0.3392 -5.3393 9.4331 20 7 0.9167 -5.4768 9.7946 21 14 -1.7031 -6.0002 10.5252 22 1 -3.0195 -5.7196 9.8976 23 1 -1.5365 -7.4662 10.6929 24 1 -1.6377 -5.3394 11.8535 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5133 0.8903 27 1 -0.3634 0.5144 -0.8897 28 1 2.3297 -0.0537 -2.0255 29 1 1.3143 -1.4660 -1.5966 30 1 3.5325 -2.3679 -1.3422 31 1 4.1717 -0.8299 -0.6782 32 1 2.2770 -2.8426 0.6571 33 1 3.7637 -2.1038 1.3310 34 1 0.2424 -0.4315 2.3492 35 1 0.3146 -1.9928 1.4973 36 1 1.7971 -3.8868 5.0954 37 1 1.7236 -2.3255 5.9470 38 1 1.2754 -4.3194 7.7037 39 1 1.1355 -5.9211 10.6286 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769167865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:24 Heat of formation + Delta-G solvation = -165.270818 kcal Electronic energy + Delta-G solvation = -20332.864532 eV Core-core repulsion = 17045.849598 eV Total energy + Delta-G solvation = -3287.014933 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.77684 -40.23422 -39.49598 -37.40481 -36.04617 -33.44410 -33.00172 -31.84697 -30.09913 -27.36502 -26.34968 -25.73370 -22.41926 -21.59642 -21.43521 -20.09252 -19.45172 -18.92354 -17.92435 -17.75010 -17.42769 -16.71942 -16.16717 -15.89325 -15.74126 -15.57469 -14.75358 -14.62503 -14.45341 -13.90315 -13.79197 -13.58220 -13.26304 -13.22740 -12.95369 -12.85100 -12.48173 -12.11382 -11.90467 -11.80406 -11.72282 -11.60780 -11.59463 -11.59304 -11.44027 -11.36936 -11.14947 -10.52635 -10.13473 -8.53887 -6.04781 1.16156 1.33845 1.39200 1.47781 1.59853 1.85103 2.29468 3.04967 3.11539 3.54435 3.65231 3.72371 3.83707 4.09177 4.13766 4.20342 4.29371 4.35697 4.42995 4.51070 4.58998 4.71817 4.74520 4.87095 4.91602 5.07430 5.08467 5.16753 5.30007 5.34094 5.36163 5.42354 5.46172 5.51140 5.61645 5.87776 6.44504 6.69881 7.01407 7.38037 7.91477 8.63453 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.049683 B = 0.003068 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.441615 B = 9122.954494 C = 9483.712436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.086 4.086 3 H 0.081 0.919 4 C -0.117 4.117 5 C -0.124 4.124 6 C -0.121 4.121 7 C -0.075 4.075 8 H 0.070 0.930 9 C -0.103 4.103 10 C 0.453 3.547 11 O -0.531 6.531 12 O -0.348 6.348 13 C 0.071 3.929 14 C 0.436 3.564 15 O -0.618 6.618 16 N -0.558 5.558 17 C -0.338 4.338 18 H 0.084 0.916 19 C -0.009 4.009 20 N -0.916 5.916 21 Si 0.999 3.001 22 H -0.271 1.271 23 H -0.269 1.269 24 H -0.269 1.269 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.400 0.600 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.216 9.410 -19.044 21.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.105 4.105 3 H 0.100 0.900 4 C -0.155 4.155 5 C -0.161 4.161 6 C -0.159 4.159 7 C -0.093 4.093 8 H 0.088 0.912 9 C -0.140 4.140 10 C 0.297 3.703 11 O -0.420 6.420 12 O -0.264 6.264 13 C -0.006 4.006 14 C 0.223 3.777 15 O -0.505 6.505 16 N -0.196 5.196 17 C -0.467 4.467 18 H 0.102 0.898 19 C -0.210 4.210 20 N -0.556 5.556 21 Si 0.822 3.178 22 H -0.195 1.195 23 H -0.194 1.194 24 H -0.194 1.194 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.234 0.766 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.892 9.377 -19.005 21.547 hybrid contribution 0.263 -0.591 1.162 1.330 sum 4.155 8.786 -17.843 20.319 Atomic orbital electron populations 1.22070 0.94300 1.02416 1.02453 1.21757 0.96347 0.99336 0.93031 0.90020 1.22464 0.96946 0.99087 0.96957 1.22491 0.98234 1.00244 0.95142 1.22436 0.99399 0.97250 0.96817 1.21671 0.94472 0.97295 0.95905 0.91165 1.21935 1.00729 1.02215 0.89135 1.24806 0.84998 0.75220 0.85231 1.90624 1.18089 1.56189 1.77136 1.86575 1.41198 1.67723 1.30867 1.22462 0.94039 0.99224 0.84874 1.20131 0.89824 0.84070 0.83692 1.90520 1.22378 1.62990 1.74587 1.41764 1.10089 1.50159 1.17567 1.19769 0.89685 1.35661 1.01595 0.89764 1.26148 0.99894 0.96673 0.98279 1.69680 1.18311 1.42841 1.24770 0.84786 0.77407 0.78126 0.77498 1.19509 1.19399 1.19404 0.92088 0.92023 0.91681 0.90521 0.91092 0.91137 0.91331 0.92378 0.92861 0.85643 0.86006 0.87905 0.87850 0.76600 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 7.87 71.98 0.57 -1.32 16 2 C -0.09 -1.17 3.50 -10.07 -0.04 -1.21 16 3 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.12 -1.46 6.36 31.67 0.20 -1.26 16 5 C -0.12 -1.86 6.91 31.89 0.22 -1.64 16 6 C -0.12 -2.44 5.36 31.67 0.17 -2.27 16 7 C -0.07 -1.40 2.55 -10.07 -0.03 -1.43 16 8 H 0.07 1.48 7.97 -2.39 -0.02 1.46 16 9 C -0.10 -2.15 3.98 29.85 0.12 -2.03 16 10 C 0.45 13.82 7.73 71.23 0.55 14.37 16 11 O -0.53 -17.95 14.50 21.96 0.32 -17.64 16 12 O -0.35 -13.03 9.76 -45.04 -0.44 -13.46 16 13 C 0.07 2.76 5.94 71.23 0.42 3.18 16 14 C 0.44 21.70 7.86 87.66 0.69 22.38 16 15 O -0.62 -35.65 16.08 15.73 0.25 -35.39 16 16 N -0.56 -29.06 5.29 -306.99 -1.62 -30.68 16 17 C -0.34 -19.16 9.68 84.04 0.81 -18.34 16 18 H 0.08 5.07 7.16 -2.91 -0.02 5.04 16 19 C -0.01 -0.49 5.50 84.93 0.47 -0.03 16 20 N -0.92 -48.96 13.05 21.66 0.28 -48.67 16 21 Si 1.00 42.19 29.55 68.60 2.03 44.22 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 23 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 24 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 25 H 0.06 0.76 6.75 -2.39 -0.02 0.74 16 26 H 0.06 0.74 6.74 -2.39 -0.02 0.73 16 27 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.85 7.85 -2.39 -0.02 0.84 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 1.21 7.78 -2.39 -0.02 1.19 16 33 H 0.05 1.29 7.60 -2.38 -0.02 1.27 16 34 H 0.13 2.21 6.55 -2.39 -0.02 2.20 16 35 H 0.12 2.23 6.83 -2.38 -0.02 2.21 16 36 H 0.10 3.60 8.13 -2.38 -0.02 3.58 16 37 H 0.10 3.62 8.13 -2.39 -0.02 3.60 16 38 H 0.40 19.62 7.90 -92.71 -0.73 18.89 16 39 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -68.36 321.22 5.30 -63.06 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: 0.32 Total: 28.16 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 4.16 Total: 10.42 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -1.34 Total: -79.36 kcal Atomic # 8 Polarization: -66.63 SS G_CDS: 0.13 Total: -66.49 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -68.36 5.30 -63.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769167865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.213 kcal (2) G-P(sol) polarization free energy of solvation -68.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds