Wall clock time and date at job start Mon Mar 30 2020 01:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.04941 * 2 1 4 4 C 1.54079 * 110.16387 * 238.52938 * 2 1 3 5 5 C 1.54266 * 106.62380 * 240.88248 * 4 2 1 6 6 C 1.54891 * 104.19354 * 336.27434 * 5 4 2 7 7 C 1.54270 * 110.02935 * 121.41143 * 2 1 3 8 8 H 1.08995 * 110.48966 * 24.09024 * 7 2 1 9 9 C 1.53000 * 110.48578 * 261.57313 * 7 2 1 10 10 C 1.50703 * 109.46912 * 176.84395 * 9 7 2 11 11 O 1.20824 * 120.00141 * 0.02562 * 10 9 7 12 12 O 1.34226 * 119.99900 * 180.02562 * 10 9 7 13 13 C 1.45203 * 116.99798 * 179.97438 * 12 10 9 14 14 C 1.50710 * 109.46747 * 179.97438 * 13 12 10 15 15 O 1.21285 * 119.99966 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99577 * 179.97438 * 14 13 12 17 17 C 1.37092 * 119.99958 * 179.97438 * 16 14 13 18 18 H 1.08007 * 119.99585 * 0.02562 * 17 16 14 19 19 C 1.38945 * 120.00245 * 180.02562 * 17 16 14 20 20 N 1.31417 * 120.00116 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00023 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47197 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47051 * 120.00020 * 21 19 17 24 24 H 1.48502 * 109.47002 * 239.99797 * 21 19 17 25 25 H 1.09000 * 109.47773 * 298.58349 * 1 2 3 26 26 H 1.08998 * 109.47175 * 58.58851 * 1 2 3 27 27 H 1.09003 * 109.47247 * 178.58425 * 1 2 3 28 28 H 1.08995 * 110.11312 * 121.53380 * 4 2 1 29 29 H 1.09000 * 109.96846 * 0.13946 * 4 2 1 30 30 H 1.09002 * 110.48633 * 217.60345 * 5 4 2 31 31 H 1.08993 * 110.49035 * 94.95374 * 5 4 2 32 32 H 1.08995 * 110.76269 * 279.63221 * 6 5 4 33 33 H 1.08997 * 110.91657 * 156.33055 * 6 5 4 34 34 H 1.09002 * 109.47398 * 296.84473 * 9 7 2 35 35 H 1.09001 * 109.47194 * 56.84653 * 9 7 2 36 36 H 1.08993 * 109.47391 * 299.99599 * 13 12 10 37 37 H 1.09000 * 109.47246 * 59.99772 * 13 12 10 38 38 H 0.96997 * 120.00193 * 0.02562 * 16 14 13 39 39 H 0.96993 * 119.99728 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0240 0.0000 4 6 2.0611 -0.7551 -1.2336 5 6 2.8884 -1.9434 -0.7013 6 6 3.3132 -1.5032 0.7217 7 6 2.0583 -0.7554 1.2370 8 1 1.3133 -1.4643 1.5982 9 6 2.4391 0.2299 2.3438 10 6 2.8782 -0.5336 3.5667 11 8 2.8863 -1.7417 3.5541 12 8 3.2603 0.1286 4.6700 13 6 3.6701 -0.6715 5.8103 14 6 4.0621 0.2374 6.9467 15 8 4.0025 1.4409 6.8090 16 7 4.4789 -0.2874 8.1161 17 6 4.8361 0.5393 9.1498 18 1 4.7830 1.6111 9.0271 19 6 5.2663 -0.0015 10.3552 20 7 5.3314 -1.3056 10.5043 21 14 5.7522 1.1250 11.7639 22 1 5.5901 2.5402 11.3444 23 1 4.8827 0.8541 12.9368 24 1 7.1696 0.8760 12.1304 25 1 -0.3635 0.4917 0.9024 26 1 -0.3633 0.5356 -0.8770 27 1 -0.3634 -1.0274 -0.0254 28 1 2.6928 -0.0984 -1.8317 29 1 1.2277 -1.1197 -1.8341 30 1 3.7655 -2.1084 -1.3272 31 1 2.2765 -2.8441 -0.6553 32 1 4.1717 -0.8331 0.6788 33 1 3.5313 -2.3684 1.3477 34 1 3.2551 0.8654 1.9998 35 1 1.5766 0.8486 2.5920 36 1 2.8430 -1.3088 6.1230 37 1 4.5216 -1.2922 5.5315 38 1 4.5269 -1.2499 8.2262 39 1 5.6320 -1.6831 11.3456 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769167874.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:30 Heat of formation + Delta-G solvation = -152.224206 kcal Electronic energy + Delta-G solvation = -20195.996290 eV Core-core repulsion = 16909.547100 eV Total energy + Delta-G solvation = -3286.449190 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.45045 -38.81985 -37.99678 -36.00327 -33.99101 -31.98296 -31.39674 -31.35595 -28.51556 -26.53766 -24.95308 -24.29450 -21.25527 -20.32994 -19.69877 -19.54717 -18.05566 -17.35961 -16.50235 -16.34640 -15.65198 -15.23271 -15.01082 -14.47038 -14.44640 -13.92275 -13.84948 -13.48872 -13.16277 -12.82523 -12.62433 -12.25013 -12.02437 -11.85340 -11.62098 -11.19206 -11.17584 -11.14096 -10.91632 -10.81283 -10.71385 -10.59506 -10.38615 -10.34968 -10.31604 -10.17911 -9.61020 -8.50692 -8.07530 -6.49427 -3.91375 2.39672 2.79413 3.12166 3.24162 3.31887 3.75047 4.11827 4.30855 4.39030 4.47661 4.75129 4.97461 5.04745 5.10512 5.14572 5.15991 5.25318 5.33467 5.36140 5.41719 5.51248 5.60618 5.63282 5.69070 5.72398 5.79056 5.85355 5.94727 5.95803 6.07736 6.12853 6.19316 6.30683 6.72570 7.48579 7.89931 8.00780 8.49655 9.08001 9.40449 9.90496 10.67978 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.052922 B = 0.002952 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.955904 B = 9482.376428 C = 9733.023006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.075 0.925 4 C -0.120 4.120 5 C -0.124 4.124 6 C -0.122 4.122 7 C -0.077 4.077 8 H 0.086 0.914 9 C -0.107 4.107 10 C 0.457 3.543 11 O -0.513 6.513 12 O -0.328 6.328 13 C 0.061 3.939 14 C 0.439 3.561 15 O -0.576 6.576 16 N -0.554 5.554 17 C -0.301 4.301 18 H 0.106 0.894 19 C 0.024 3.976 20 N -0.898 5.898 21 Si 0.933 3.067 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.395 0.605 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.534 -1.393 -19.958 21.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 H 0.093 0.907 4 C -0.158 4.158 5 C -0.162 4.162 6 C -0.160 4.160 7 C -0.095 4.095 8 H 0.104 0.896 9 C -0.144 4.144 10 C 0.300 3.700 11 O -0.402 6.402 12 O -0.243 6.243 13 C -0.017 4.017 14 C 0.223 3.777 15 O -0.460 6.460 16 N -0.191 5.191 17 C -0.431 4.431 18 H 0.124 0.876 19 C -0.178 4.178 20 N -0.538 5.538 21 Si 0.760 3.240 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.228 0.772 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.503 -1.044 -19.850 20.914 hybrid contribution 0.323 -0.323 0.945 1.050 sum -6.180 -1.368 -18.905 19.936 Atomic orbital electron populations 1.21896 0.94886 1.01858 1.01683 1.21832 0.95741 0.99538 0.94076 0.90652 1.22249 0.99374 0.97094 0.97035 1.22333 0.99413 0.97957 0.96476 1.22618 0.96790 1.00744 0.95835 1.21938 0.98484 0.96199 0.92923 0.89608 1.21473 1.03904 0.98850 0.90199 1.23795 0.74058 0.87405 0.84767 1.90628 1.50542 1.15566 1.83492 1.86560 1.75351 1.40718 1.21663 1.22716 1.00987 0.93338 0.84652 1.19358 0.85589 0.88805 0.83905 1.90557 1.58484 1.14772 1.82206 1.41719 1.57248 1.09824 1.10335 1.19776 1.40857 0.92168 0.90259 0.87579 1.25314 0.97179 0.96367 0.98959 1.69624 1.46879 1.10292 1.27036 0.85743 0.78076 0.80090 0.80106 1.19086 1.20626 1.20619 0.92514 0.92735 0.92572 0.91920 0.91831 0.91851 0.91717 0.91704 0.90331 0.87635 0.87690 0.89652 0.89651 0.77170 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.85 37.16 0.33 -0.74 16 2 C -0.09 -0.74 3.08 -89.39 -0.28 -1.02 16 3 H 0.08 0.56 7.84 -51.93 -0.41 0.16 16 4 C -0.12 -0.90 6.47 -25.51 -0.16 -1.06 16 5 C -0.12 -1.04 6.83 -25.07 -0.17 -1.21 16 6 C -0.12 -1.25 5.69 -24.73 -0.14 -1.40 16 7 C -0.08 -0.77 1.99 -88.95 -0.18 -0.94 16 8 H 0.09 0.95 7.67 -51.93 -0.40 0.55 16 9 C -0.11 -1.17 5.17 -27.88 -0.14 -1.32 16 10 C 0.46 7.08 7.76 36.01 0.28 7.36 16 11 O -0.51 -8.73 14.36 -18.75 -0.27 -9.00 16 12 O -0.33 -6.18 9.75 -45.89 -0.45 -6.63 16 13 C 0.06 1.18 5.94 36.01 0.21 1.39 16 14 C 0.44 10.73 7.86 -10.98 -0.09 10.64 16 15 O -0.58 -16.22 16.08 -14.11 -0.23 -16.44 16 16 N -0.55 -14.16 5.29 -10.96 -0.06 -14.22 16 17 C -0.30 -8.38 9.68 -14.94 -0.14 -8.52 16 18 H 0.11 3.08 7.16 -52.48 -0.38 2.71 16 19 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 20 N -0.90 -24.23 13.05 55.50 0.72 -23.51 16 21 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.44 7.68 -51.93 -0.40 0.04 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.65 8.00 -51.93 -0.42 0.23 16 33 H 0.08 0.95 7.16 -51.93 -0.37 0.58 16 34 H 0.11 1.03 8.06 -51.93 -0.42 0.61 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 37 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 38 H 0.39 9.57 7.90 -40.82 -0.32 9.24 16 39 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 327.25 15.07 4.93 4.93 Total: -1.00 -31.80 327.25 -6.99 -38.80 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -6.05 Total: 6.58 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -0.58 Total: 3.72 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.67 Total: -37.72 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.94 Total: -32.07 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.80 -6.99 -38.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769167874.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.429 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds