Wall clock time and date at job start Mon Mar 30 2020 01:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.04941 * 2 1 4 4 C 1.54079 * 110.16387 * 238.52938 * 2 1 3 5 5 C 1.54266 * 106.62380 * 240.88248 * 4 2 1 6 6 C 1.54891 * 104.19354 * 336.27434 * 5 4 2 7 7 C 1.54270 * 110.02935 * 121.41143 * 2 1 3 8 8 H 1.08995 * 110.48966 * 24.09024 * 7 2 1 9 9 C 1.53000 * 110.48578 * 261.57313 * 7 2 1 10 10 C 1.50703 * 109.46912 * 176.84395 * 9 7 2 11 11 O 1.20824 * 120.00141 * 0.02562 * 10 9 7 12 12 O 1.34226 * 119.99900 * 180.02562 * 10 9 7 13 13 C 1.45203 * 116.99798 * 179.97438 * 12 10 9 14 14 C 1.50710 * 109.46747 * 179.97438 * 13 12 10 15 15 O 1.21285 * 119.99966 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99577 * 179.97438 * 14 13 12 17 17 C 1.37092 * 119.99958 * 179.97438 * 16 14 13 18 18 H 1.08007 * 119.99585 * 0.02562 * 17 16 14 19 19 C 1.38945 * 120.00245 * 180.02562 * 17 16 14 20 20 N 1.31417 * 120.00116 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00023 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47197 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47051 * 120.00020 * 21 19 17 24 24 H 1.48502 * 109.47002 * 239.99797 * 21 19 17 25 25 H 1.09000 * 109.47773 * 298.58349 * 1 2 3 26 26 H 1.08998 * 109.47175 * 58.58851 * 1 2 3 27 27 H 1.09003 * 109.47247 * 178.58425 * 1 2 3 28 28 H 1.08995 * 110.11312 * 121.53380 * 4 2 1 29 29 H 1.09000 * 109.96846 * 0.13946 * 4 2 1 30 30 H 1.09002 * 110.48633 * 217.60345 * 5 4 2 31 31 H 1.08993 * 110.49035 * 94.95374 * 5 4 2 32 32 H 1.08995 * 110.76269 * 279.63221 * 6 5 4 33 33 H 1.08997 * 110.91657 * 156.33055 * 6 5 4 34 34 H 1.09002 * 109.47398 * 296.84473 * 9 7 2 35 35 H 1.09001 * 109.47194 * 56.84653 * 9 7 2 36 36 H 1.08993 * 109.47391 * 299.99599 * 13 12 10 37 37 H 1.09000 * 109.47246 * 59.99772 * 13 12 10 38 38 H 0.96997 * 120.00193 * 0.02562 * 16 14 13 39 39 H 0.96993 * 119.99728 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0240 0.0000 4 6 2.0611 -0.7551 -1.2336 5 6 2.8884 -1.9434 -0.7013 6 6 3.3132 -1.5032 0.7217 7 6 2.0583 -0.7554 1.2370 8 1 1.3133 -1.4643 1.5982 9 6 2.4391 0.2299 2.3438 10 6 2.8782 -0.5336 3.5667 11 8 2.8863 -1.7417 3.5541 12 8 3.2603 0.1286 4.6700 13 6 3.6701 -0.6715 5.8103 14 6 4.0621 0.2374 6.9467 15 8 4.0025 1.4409 6.8090 16 7 4.4789 -0.2874 8.1161 17 6 4.8361 0.5393 9.1498 18 1 4.7830 1.6111 9.0271 19 6 5.2663 -0.0015 10.3552 20 7 5.3314 -1.3056 10.5043 21 14 5.7522 1.1250 11.7639 22 1 5.5901 2.5402 11.3444 23 1 4.8827 0.8541 12.9368 24 1 7.1696 0.8760 12.1304 25 1 -0.3635 0.4917 0.9024 26 1 -0.3633 0.5356 -0.8770 27 1 -0.3634 -1.0274 -0.0254 28 1 2.6928 -0.0984 -1.8317 29 1 1.2277 -1.1197 -1.8341 30 1 3.7655 -2.1084 -1.3272 31 1 2.2765 -2.8441 -0.6553 32 1 4.1717 -0.8331 0.6788 33 1 3.5313 -2.3684 1.3477 34 1 3.2551 0.8654 1.9998 35 1 1.5766 0.8486 2.5920 36 1 2.8430 -1.3088 6.1230 37 1 4.5216 -1.2922 5.5315 38 1 4.5269 -1.2499 8.2262 39 1 5.6320 -1.6831 11.3456 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769167874.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:30 Heat of formation + Delta-G solvation = -170.618733 kcal Electronic energy + Delta-G solvation = -20196.793936 eV Core-core repulsion = 16909.547100 eV Total energy + Delta-G solvation = -3287.246836 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.73139 -40.18121 -39.38885 -37.40925 -36.04748 -33.44267 -32.84719 -32.04000 -30.10698 -27.50223 -26.49912 -25.36781 -22.33501 -21.44285 -21.23493 -20.40715 -20.08326 -18.66700 -17.93893 -17.77631 -17.20093 -16.55082 -16.06876 -15.98039 -15.71110 -15.64363 -14.81533 -14.62172 -14.31574 -13.93765 -13.73228 -13.58936 -13.47369 -13.13829 -12.94546 -12.78928 -12.48089 -12.11415 -11.96402 -11.90527 -11.81812 -11.72715 -11.59986 -11.53709 -11.43773 -11.27693 -11.19686 -10.52550 -10.13418 -8.53866 -6.04692 1.16306 1.33857 1.39104 1.47591 1.59786 1.85199 2.29458 3.04630 3.11607 3.54465 3.65196 3.75669 3.84610 4.08513 4.14035 4.20543 4.30015 4.36347 4.45215 4.51791 4.61005 4.71707 4.76298 4.78498 4.92015 5.05348 5.12551 5.19739 5.26539 5.33527 5.35637 5.39293 5.45729 5.52660 5.61732 5.87819 6.44618 6.69930 7.01494 7.38143 7.91589 8.63506 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.052922 B = 0.002952 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.955904 B = 9482.376428 C = 9733.023006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 H 0.086 0.914 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.126 4.126 7 C -0.075 4.075 8 H 0.072 0.928 9 C -0.101 4.101 10 C 0.455 3.545 11 O -0.530 6.530 12 O -0.348 6.348 13 C 0.072 3.928 14 C 0.436 3.564 15 O -0.618 6.618 16 N -0.558 5.558 17 C -0.338 4.338 18 H 0.084 0.916 19 C -0.009 4.009 20 N -0.916 5.916 21 Si 0.999 3.001 22 H -0.271 1.271 23 H -0.269 1.269 24 H -0.269 1.269 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.400 0.600 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.779 -1.119 -20.793 21.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 H 0.104 0.896 4 C -0.155 4.155 5 C -0.160 4.160 6 C -0.164 4.164 7 C -0.093 4.093 8 H 0.090 0.910 9 C -0.139 4.139 10 C 0.300 3.700 11 O -0.420 6.420 12 O -0.264 6.264 13 C -0.006 4.006 14 C 0.223 3.777 15 O -0.505 6.505 16 N -0.196 5.196 17 C -0.467 4.467 18 H 0.102 0.898 19 C -0.210 4.210 20 N -0.556 5.556 21 Si 0.822 3.178 22 H -0.195 1.195 23 H -0.194 1.194 24 H -0.194 1.194 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.234 0.766 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.754 -0.812 -20.700 21.790 hybrid contribution 0.390 -0.464 1.164 1.313 sum -6.364 -1.275 -19.536 20.586 Atomic orbital electron populations 1.21899 0.94347 1.01841 1.02220 1.21818 0.96153 0.99768 0.92973 0.89602 1.22249 0.99624 0.96669 0.96916 1.22323 0.99892 0.98358 0.95404 1.22612 0.97153 0.99927 0.96681 1.21932 0.98018 0.95961 0.93415 0.90974 1.21676 1.05060 0.98972 0.88151 1.24694 0.73090 0.87581 0.84649 1.90623 1.51268 1.16507 1.83590 1.86574 1.75999 1.41536 1.22269 1.22465 1.02363 0.92074 0.83676 1.20140 0.84110 0.88913 0.84554 1.90519 1.59977 1.16892 1.83093 1.41762 1.57385 1.09868 1.10576 1.19764 1.43330 0.91681 0.91912 0.89774 1.26148 0.96225 0.97914 1.00723 1.69680 1.46470 1.11436 1.28023 0.84786 0.78290 0.77813 0.76929 1.19518 1.19409 1.19395 0.92636 0.91530 0.92943 0.90926 0.90999 0.91089 0.92011 0.91449 0.92843 0.85897 0.85879 0.87845 0.87863 0.76595 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.85 71.98 0.64 -1.18 16 2 C -0.09 -1.20 3.08 -10.00 -0.03 -1.24 16 3 H 0.09 1.02 7.84 -2.39 -0.02 1.00 16 4 C -0.12 -1.47 6.47 31.39 0.20 -1.27 16 5 C -0.12 -1.88 6.83 31.67 0.22 -1.66 16 6 C -0.13 -2.48 5.69 31.89 0.18 -2.30 16 7 C -0.07 -1.39 1.99 -9.71 -0.02 -1.41 16 8 H 0.07 1.55 7.67 -2.39 -0.02 1.53 16 9 C -0.10 -2.07 5.17 29.85 0.15 -1.92 16 10 C 0.46 13.76 7.76 71.24 0.55 14.32 16 11 O -0.53 -17.83 14.36 21.97 0.32 -17.51 16 12 O -0.35 -12.96 9.75 -45.03 -0.44 -13.40 16 13 C 0.07 2.76 5.94 71.24 0.42 3.18 16 14 C 0.44 21.66 7.86 87.66 0.69 22.35 16 15 O -0.62 -35.62 16.08 15.75 0.25 -35.37 16 16 N -0.56 -29.04 5.29 -306.98 -1.62 -30.66 16 17 C -0.34 -19.13 9.68 84.04 0.81 -18.32 16 18 H 0.08 5.06 7.16 -2.91 -0.02 5.04 16 19 C -0.01 -0.50 5.50 84.92 0.47 -0.03 16 20 N -0.92 -48.94 13.05 21.66 0.28 -48.66 16 21 Si 1.00 42.19 29.55 68.60 2.03 44.21 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 25 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.81 7.68 -2.39 -0.02 0.79 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.27 8.00 -2.39 -0.02 1.25 16 33 H 0.05 1.31 7.16 -2.39 -0.02 1.29 16 34 H 0.12 2.13 8.06 -2.39 -0.02 2.11 16 35 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.10 3.60 8.13 -2.39 -0.02 3.58 16 37 H 0.10 3.60 8.13 -2.39 -0.02 3.58 16 38 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 39 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -68.38 327.25 5.42 -62.96 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.31 Total: 27.90 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 4.29 Total: 10.52 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -1.34 Total: -79.32 kcal Atomic # 8 Polarization: -66.41 SS G_CDS: 0.13 Total: -66.28 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Total: -68.38 5.42 -62.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769167874.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.655 kcal (2) G-P(sol) polarization free energy of solvation -68.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds